Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

16797455 .. 16801980

Gene Structure 4526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G211900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAATATGGAAGGCACGCCGGCTCTCCATGGATACTACATGCCTGCAGAGTGGGAACCCCATTCACAGTGTTGGATTGGATGGCCTGAACGCCCAGATAACTGGAGAGACAATGCAGTGCCTGCTCAACAGGTGTTTGCCAAGGTCGCATCTGCAATCTCAAAGTTTGAGCATGTGACTGTCTGCGCAAGTGCTGCTCAGTGGGCAAATGCACGAAGTCAGCTACCAGAAAATATCAGGGTTATCGAGATGAGCTTGAATGATTCTTGGTTCCGTGATACAGGGCCAACATTTGTCATAGGAATAAGTGCATCGTCTTCTTCTACCCCAGAGCCAAAGGTTGCTGGTATTGATTGGAACTTTAACAGTTGGGGAGGCATTGATGATGGTTGTTACCGAGATTGGAGTCATGACCTTCTTGTGGCACGGAAGATCCTGGCAGTTGAGAAGCTTCCAAGGTTTCCACACTCAATGATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGCCTCACCACCGAGGAGTGCCTCTTAAATAAAAACAGGAACCCAGATTTGACCAAGGAGCAAATAGAGGATCAACTTAAGGCATACCTTGGAGTGAGGAAAGTTATTTGGTTGCCTCGTGGATTATATGGAGACGATGACACTAATGGTCACATCGACAATATGTGCTGTTTTGTGAAGCCTGGTGTGGTTTTGTTGTCCTGGACTGATGATGAAAAGGATCCTCAGTATGAAAGAGCTGTGGAAGCCTTTTCTGTTCTCTCTAATACTACTGATGCCAATGGTAGGAAATTAGAAATAATTAAACTTCATGTACCTGGGCCACTGTACATGACAGATGAAGAGGCTACTGGAATTTTTCAGGAGGACTGTGAAGCTAAACCGAGACTTCCAGGCACGAGACTTGCTGCTTCATATGTAAATTTCTACATTGCCAATGGAGCAATCATTGCACCCCAATTTGGGGACCTAAAATGGGATGATGAGGCTGTTCGTGTCCTATCTCAAGCCTTTCCAAACCATGAAGTGGTAAGAATTGAAGGTGCAAGGGAGATTGTTCTAGCGGGTGGAAATATACATTGCATCACTCAGCAACAACCACACATTCCACAGAGTATCGTCAACCACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

383

Amino Acids

42.68

Weight (kDa)

4.98

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	1042
AciI	CCGC	1 cut(s)	1079
AclWI	GGATC	4 cut(s)	427, 594, 731, 744
AcsI	RAATTY	2 cut(s)	870, 937
AfaI	GTAC	2 cut(s)	831, 845
AfiI	CCNNNNNNNGG	7 cut(s)	421, 801, 977, 978, 979, 991, 1042
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	259, 1055
AjnI	CCWGG	5 cut(s)	435, 697, 716, 832, 907
AluBI	AGCT	5 cut(s)	223, 255, 451, 755, 893
AluI	AGCT	5 cut(s)	223, 255, 451, 755, 893
Alw26I	GTCTC	4 cut(s)	102, 642, 895, 910
AlwI	GGATC	4 cut(s)	427, 594, 731, 744
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	83, 284, 836
ApeKI	GCWGC	2 cut(s)	194, 923
ApoI	RAATTY	2 cut(s)	870, 937
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	284, 836, 982
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	982
BamHI	GGATCC	1 cut(s)	736
BauI	CACGAG	2 cut(s)	633, 913
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	181, 910
BccI	CCATC	3 cut(s)	75, 380, 497
BciT130I	CCWGG	5 cut(s)	437, 699, 718, 834, 909
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	4 cut(s)	102, 642, 895, 910
BfaI	CTAG	1 cut(s)	1076
BfmI	CTRYAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	195, 924
BlsI	GCNGC	2 cut(s)	196, 925
Bme1390I	CCNGG	5 cut(s)	437, 699, 718, 834, 909
Bme18I	GGWCC	1 cut(s)	982
BmgT120I	GGNCC	3 cut(s)	284, 836, 982
BmiI	GGNNCC	5 cut(s)	57, 272, 557, 738, 983
BmrFI	CCNGG	5 cut(s)	437, 699, 718, 834, 909
BmsI	GCATC	5 cut(s)	158, 320, 501, 781, 1107
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	1005
BsaJI	CCNNGG	7 cut(s)	28, 141, 455, 528, 570, 604, 833
Bsc4I	CCNNNNNNNGG	7 cut(s)	421, 801, 977, 978, 979, 991, 1042
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	2 cut(s)	107, 871
Bse3DI	GCAATG	3 cut(s)	945, 963, 1093
BseBI	CCWGG	5 cut(s)	437, 699, 718, 834, 909
BseDI	CCNNGG	7 cut(s)	28, 141, 455, 528, 570, 604, 833
BseGI	GGATG	3 cut(s)	86, 492, 1000
BseLI	CCNNNNNNNGG	7 cut(s)	421, 801, 977, 978, 979, 991, 1042
BseMI	GCAATG	3 cut(s)	945, 963, 1093
BseMII	CTCAG	3 cut(s)	212, 755, 1118
BseNI	ACTGG	2 cut(s)	107, 871
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	181, 910
BshFI	GGCC	3 cut(s)	85, 286, 838
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	526, 995
BslI	CCNNNNNNNGG	7 cut(s)	421, 801, 977, 978, 979, 991, 1042
BsmAI	GTCTC	4 cut(s)	102, 642, 895, 910
BsmBI	CGTCTC	1 cut(s)	642
BsmFI	GGGAC	2 cut(s)	526, 995
BsnI	GGCC	3 cut(s)	85, 286, 838
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	3 cut(s)	432, 586, 736
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	1079
BspANI	GGCC	3 cut(s)	85, 286, 838
BspCNI	CTCAG	3 cut(s)	211, 754, 1117
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	5 cut(s)	57, 272, 557, 738, 983
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	4 cut(s)	427, 594, 731, 744
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	3 cut(s)	945, 963, 1093
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	2 cut(s)	107, 871
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	7 cut(s)	28, 141, 455, 528, 570, 604, 833
BssMI	GATC	3 cut(s)	432, 586, 736
BssSI	CACGAG	2 cut(s)	633, 913
BssT1I	CCWWGG	5 cut(s)	28, 141, 455, 570, 604
Bst2BI	CACGAG	2 cut(s)	633, 913
Bst2UI	CCWGG	5 cut(s)	437, 699, 718, 834, 909
Bst4CI	ACNGT	5 cut(s)	69, 181, 368, 843, 887
Bst6I	CTCTTC	1 cut(s)	852
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	3 cut(s)	122, 194, 965
BstAUI	TGTACA	1 cut(s)	843
BstC8I	GCNNGC	4 cut(s)	17, 21, 45, 123
BstDEI	CTNAG	3 cut(s)	198, 741, 1104
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	3 cut(s)	86, 492, 1000
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	435, 589, 739
BstMAI	GTCTC	4 cut(s)	102, 642, 895, 910
BstMBI	GATC	3 cut(s)	432, 586, 736
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 146, 194, 203, 761, 956, 965
BstNI	CCWGG	5 cut(s)	437, 699, 718, 834, 909
BstNSI	RCATGY	2 cut(s)	43, 176
BstSCI	CCNGG	5 cut(s)	435, 697, 716, 832, 907
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	181, 910
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	432, 736
BstXI	CCANNNNNNTGG	2 cut(s)	102, 503
BstYI	RGATCY	2 cut(s)	432, 736
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	85, 286, 838
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	86, 492, 1000
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	4 cut(s)	74, 123, 206, 839
Cac8I	GCNNGC	4 cut(s)	17, 21, 45, 123
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	284, 836, 982
Csp6I	GTAC	2 cut(s)	830, 844
CviAII	CATG	8 cut(s)	29, 40, 173, 410, 497, 827, 847, 1037
CviQI	GTAC	2 cut(s)	830, 844
DdeI	CTNAG	3 cut(s)	198, 741, 1104
DpnI	GATC	3 cut(s)	434, 588, 738
DpnII	GATC	3 cut(s)	432, 586, 736
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
Eco130I	CCWWGG	5 cut(s)	28, 141, 455, 570, 604
Eco47I	GGWCC	1 cut(s)	982
EcoO109I	RGGNCCY	1 cut(s)	982
EcoRII	CCWGG	5 cut(s)	435, 697, 716, 832, 907
EcoT14I	CCWWGG	5 cut(s)	28, 141, 455, 570, 604
ErhI	CCWWGG	5 cut(s)	28, 141, 455, 570, 604
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	8 cut(s)	32, 43, 176, 413, 500, 830, 850, 1040
FaqI	GGGAC	2 cut(s)	526, 995
FatI	CATG	8 cut(s)	28, 39, 172, 409, 496, 826, 846, 1036
FauI	CCCGC	1 cut(s)	1072
FauNDI	CATATG	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	195, 924
FokI	GGATG	3 cut(s)	93, 479, 1007
Fsp4HI	GCNGC	2 cut(s)	195, 924
FspBI	CTAG	1 cut(s)	1076
FspI	TGCGCA	1 cut(s)	187
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	195, 924
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	85, 286, 838
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	8 cut(s)	32, 43, 176, 413, 500, 830, 850, 1040
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	263, 406, 475
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	1138
Hpy188III	TCNNGA	4 cut(s)	247, 410, 479, 878
Hpy8I	GTNNAC	1 cut(s)	1138
HpyAV	CCTTC	5 cut(s)	5, 425, 476, 503, 1049
HpyCH4III	ACNGT	5 cut(s)	69, 181, 368, 843, 887
HpyCH4V	TGCA	8 cut(s)	47, 116, 155, 212, 311, 968, 1061, 1098
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 146, 194, 203, 761, 956, 965
HpyF3I	CTNAG	3 cut(s)	198, 741, 1104
Hsp92II	CATG	8 cut(s)	32, 43, 176, 413, 500, 830, 850, 1040
HspAI	GCGC	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	432, 586, 736
LmnI	GCTCC	2 cut(s)	574, 956
Lsp1109I	GCAGC	2 cut(s)	181, 910
LweI	GCATC	5 cut(s)	158, 320, 501, 781, 1107
MaeI	CTAG	1 cut(s)	1076
MaeIII	GTNAC	3 cut(s)	175, 392, 665
MalI	GATC	3 cut(s)	434, 588, 738
MboI	GATC	3 cut(s)	432, 586, 736
MboII	GAAGA	4 cut(s)	309, 312, 442, 869
MflI	RGATCY	2 cut(s)	432, 736
MluCI	AATT	6 cut(s)	806, 816, 870, 937, 974, 1050
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	19
MseI	TTAA	4 cut(s)	363, 542, 594, 819
MslI	CAYNNNNRTG	1 cut(s)	501
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	5 cut(s)	437, 699, 718, 834, 909
MvaI	CCWGG	5 cut(s)	437, 699, 718, 834, 909
MwoI	GCNNNNNNNGC	7 cut(s)	122, 146, 194, 203, 761, 956, 965
NaeI	GCCGGC	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	3 cut(s)	432, 586, 736
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	8 cut(s)	32, 43, 176, 413, 500, 830, 850, 1040
NlaIV	GGNNCC	5 cut(s)	57, 272, 557, 738, 983
NmuCI	GTSAC	2 cut(s)	175, 665
NsbI	TGCGCA	1 cut(s)	187
NspI	RCATGY	2 cut(s)	43, 176
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	1140
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	263, 475
PflMI	CCANNNNNTGG	1 cut(s)	1042
PfoI	TCCNGGA	1 cut(s)	716
PkrI	GCNGC	2 cut(s)	196, 925
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	982
Psp5II	RGGWCCY	1 cut(s)	982
Psp6I	CCWGG	5 cut(s)	435, 697, 716, 832, 907
PspGI	CCWGG	5 cut(s)	435, 697, 716, 832, 907
PspN4I	GGNNCC	5 cut(s)	57, 272, 557, 738, 983
PspPI	GGNCC	3 cut(s)	284, 836, 982
PspPPI	RGGWCCY	1 cut(s)	982
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	432, 736
RsaI	GTAC	2 cut(s)	831, 845
RsaNI	GTAC	2 cut(s)	830, 844
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	363, 542, 594, 819
SatI	GCNGC	2 cut(s)	195, 924
Sau3AI	GATC	3 cut(s)	432, 586, 736
Sau96I	GGNCC	3 cut(s)	284, 836, 982
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	5 cut(s)	437, 699, 718, 834, 909
SfaNI	GCATC	5 cut(s)	158, 320, 501, 781, 1107
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	982
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	593, 1020
SmoI	CTYRAG	2 cut(s)	593, 1020
Sse9I	AATT	6 cut(s)	806, 816, 870, 937, 974, 1050
SsiI	CCGC	1 cut(s)	1079
SspMI	CTAG	1 cut(s)	1076
StyD4I	CCNGG	5 cut(s)	435, 697, 716, 832, 907
StyI	CCWWGG	5 cut(s)	28, 141, 455, 570, 604
TaaI	ACNGT	5 cut(s)	69, 181, 368, 843, 887
TaqI	TCGA	3 cut(s)	246, 480, 672
TasI	AATT	6 cut(s)	806, 816, 870, 937, 974, 1050
TatI	WGTACW	1 cut(s)	843
TfiI	GAWTC	2 cut(s)	263, 475
Tru1I	TTAA	4 cut(s)	363, 542, 594, 819
Tru9I	TTAA	4 cut(s)	363, 542, 594, 819
TscAI	CASTG	4 cut(s)	74, 123, 206, 846
TseFI	GTSAC	2 cut(s)	175, 665
TseI	GCWGC	2 cut(s)	194, 923
Tsp45I	GTSAC	2 cut(s)	175, 665
TspDTI	ATGAA	7 cut(s)	17, 744, 762, 815, 870, 918, 1053
TspGWI	ACGGA	2 cut(s)	263, 442
TspRI	CASTG	4 cut(s)	74, 123, 206, 846
Van91I	CCANNNNNTGG	1 cut(s)	1042
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	982
XapI	RAATTY	2 cut(s)	870, 937
XceI	RCATGY	2 cut(s)	43, 176
XspI	CTAG	1 cut(s)	1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.