Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

58834657 .. 58836407

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0462700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGAATTCCATCGGAAATGAGGGACATGTGGGTGAACAACCGTCGAAACTCTCTGCTGATTCCTTCGCCATATGAAGATGAGATTCAACAGAAGGCCTTAAGGGCCAAAACTTGCACCCAAGAGGGCGCTCGCCAGGGATTCAAGGCAGCTTGCATTTGGGGTGCTGTCAGCGCTGTGCCTACATTGGCTGCTGTTCGTACGATTCCTTGGGCAAAGGCTAACCTCAATTATACTGCTCAAGCACTGATGATATCTGCTGCATCAATTGCTGCTTACTTCATCACCGCTGATAAAACCATCTTGGAGTGTGCTAGAAAAAATGCGCAGTTGCAACAAGCCTTGAGCCGCCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

119

Amino Acids

13.13

Weight (kDa)

9.6

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ENOD93	PF03386	33 - 108	6.7e-37	Early nodulin 93 ENOD93 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AciI	CCGC	2 cut(s)	288, 349
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	175
AflII	CTTAAG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	89, 145
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	2 cut(s)	96, 105
ApeKI	GCWGC	4 cut(s)	149, 191, 260, 272
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	3 cut(s)	131, 176, 328
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	46, 277
BbvI	GCAGC	4 cut(s)	161, 178, 247, 259
BccI	CCATC	2 cut(s)	19, 308
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	2 cut(s)	132, 177
BfrI	CTTAAG	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
BlsI	GCNGC	5 cut(s)	151, 193, 262, 274, 350
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	136, 209
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	136, 209
BseXI	GCAGC	4 cut(s)	161, 178, 247, 259
BshFI	GGCC	2 cut(s)	98, 107
BsiWI	CGTACG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	98, 107
BspACI	CCGC	2 cut(s)	288, 349
BspANI	GGCC	2 cut(s)	98, 107
BspTI	CTTAAG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	136, 209
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	133, 154, 353
BstH2I	RGCGCY	2 cut(s)	132, 177
BstHHI	GCGC	3 cut(s)	131, 176, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 173, 269
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	161, 178, 247, 259
BsuRI	GGCC	2 cut(s)	98, 107
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	133, 154, 353
CfoI	GCGC	3 cut(s)	131, 176, 328
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	7 cut(s)	98, 107, 152, 191, 221, 341, 348
CviKI_1	RGCY	7 cut(s)	98, 107, 152, 191, 221, 341, 348
CviQI	GTAC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	31
FaiI	YATR	4 cut(s)	29, 73, 75, 234
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
Fsp4HI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
FspBI	CTAG	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	3 cut(s)	130, 175, 327
GluI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
HaeII	RGCGCY	2 cut(s)	132, 177
HaeIII	GGCC	2 cut(s)	98, 107
HhaI	GCGC	3 cut(s)	131, 176, 328
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	3 cut(s)	129, 174, 326
HinP1I	GCGC	3 cut(s)	129, 174, 326
HinfI	GANTC	4 cut(s)	61, 85, 141, 205
HphI	GGTGA	2 cut(s)	46, 277
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	75, 88
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	117, 156, 263, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 173, 269
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	3 cut(s)	129, 174, 326
LpnPI	CCDG	2 cut(s)	122, 149
Lsp1109I	GCAGC	4 cut(s)	161, 178, 247, 259
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	315
MboII	GAAGA	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	3 cut(s)	6, 229, 267
MnlI	CCTC	3 cut(s)	15, 118, 236
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	104, 173, 269
NdeI	CATATG	1 cut(s)	73
NlaIII	CATG	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	98
PciI	ACATGT	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	61, 85, 141, 205
Pfl23II	CGTACG	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	151, 193, 262, 274, 350
PscI	ACATGT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspLI	CGTACG	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	5 cut(s)	150, 192, 261, 273, 349
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	2 cut(s)	154, 228
SfaNI	GCATC	1 cut(s)	272
SfiI	GGCCNNNNNGGCC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	3 cut(s)	100, 240, 343
SmoI	CTYRAG	3 cut(s)	100, 240, 343
Sse9I	AATT	3 cut(s)	6, 229, 267
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	2 cut(s)	288, 349
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	46
TasI	AATT	3 cut(s)	6, 229, 267
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	4 cut(s)	61, 85, 141, 205
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	4 cut(s)	149, 191, 260, 272
TspDTI	ATGAA	2 cut(s)	90, 271
TspRI	CASTG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.