Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

19400796 .. 19405644

Gene Structure 4849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCCACCGTGATCACCGCCTTGTTGTTGTTGGGTCCCTTGGAATCTATGCTTTCTACTATTGCCAAGAAGTGCATTAGGTTCTCGGCGAAAGCCAAAGATTCGACAATTGAGAAGCTTCTAAGGTTTCCACATAACATGATTCTTGAAGGTGGAAGCATCCATGTAGATGGAGAAGGTAACAATCAAGGCACCGTGAAAGCACGTTCTGTGCAAGCACGGTTGTCATCTTATTTTGTTAATCATAAATTGCTCTCTTCCTTTAGGGACTTGCCTCACTACGAGGAGTGCCTCCTAAATAAAAAACAGGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

9.26

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	191
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	4 cut(s)	36, 37, 193, 312
BmsI	GCATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	21, 281
BsmFI	GGGAC	2 cut(s)	21, 281
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	4 cut(s)	36, 37, 193, 312
BspT107I	GGYRCC	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	10, 196, 222
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	2 cut(s)	139, 164
CviJI	RGCY	3 cut(s)	5, 95, 118
CviKI_1	RGCY	3 cut(s)	5, 95, 118
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	142, 167
FaiI	YATR	5 cut(s)	50, 135, 140, 165, 246
FaqI	GGGAC	2 cut(s)	21, 281
FatI	CATG	2 cut(s)	138, 163
FbaI	TGATCA	1 cut(s)	12
FokI	GGATG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	142, 167
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	44, 101, 142
HphI	GGTGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	143, 170
HpyCH4III	ACNGT	3 cut(s)	10, 196, 222
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	75, 214
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	142, 167
KflI	GGGWCCC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	1 cut(s)	293
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	249
MfeI	CAATTG	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	108, 248
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	277, 285, 302
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	108
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	142, 167
NlaIV	GGNNCC	4 cut(s)	36, 37, 193, 312
NmeAIII	GCCGAG	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	44, 101, 142
PpuMI	RGGWCCY	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	36, 37, 193, 312
PspPI	GGNCC	1 cut(s)	35
PspPPI	RGGWCCY	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	35
SetI	ASST	6 cut(s)	83, 120, 128, 154, 181, 208
SfaNI	GCATC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	108, 248
SsiI	CCGC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	10, 196, 222
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	108, 248
TfiI	GAWTC	3 cut(s)	44, 101, 142
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.