Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018187.1

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1912

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 821 bp

gtgcatcatgttctcagccagagccaaaggttgctggcattgattggaattttaacagttggggaggtgttgatgatggttgttatccagactggagtcatgacctccttgtggcacggaagattctggcaattgagaagcttccaaggtttccacataccatgattctcgaaggtggaagcatccatgtagatggagaagggacttgcctcactactgaggagtgcctcctaaataaaaacaggaaccctaatttgaccaaggagcaaatagaggatcaacttaaggcatatcttggagtgacaaagattatttggttgcctcgtggattatatggagatgatgatactaatggtcacattgacaatatgtgctgttttgtgaagcctggtgtggttttgttgtcctggactgatgatgaaacagatcctcagtatgaacgagctgtagaagccctttctgtccttggcaatactactgatgtcaagggtaggaagttggaagtgattaagcttcatgtgccaggcccactatacatgacagaggaagaggctgctggagtttctcaggacgatgctaaaccgagacttgcaggcacaagacttgcagcttcttatgtgaatttctacattgccaatggagcaatcattgcaccacaatttggggaccagaaatgggacgatgaggctgttcgtgtcctatcgaaagcctttccgaaccatgaagtggtgaaaattgaaggtgctagggagattgttctagcgggtggaaacatacactgcataactcagcaacaaccgcgctgtattgtccaaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

272

Amino Acids

30.04

Weight (kDa)

4.97

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	661, 726
AccII	CGCG	1 cut(s)	801
AciI	CCGC	2 cut(s)	763, 799
AclWI	GGATC	2 cut(s)	284, 421
AcsI	RAATTY	2 cut(s)	48, 621
AfiI	CCNNNNNNNGG	4 cut(s)	111, 661, 675, 726
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	739
AjnI	CCWGG	3 cut(s)	387, 406, 522
AluBI	AGCT	4 cut(s)	141, 445, 513, 610
AluI	AGCT	4 cut(s)	141, 445, 513, 610
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	284, 421
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	2 cut(s)	553, 607
ApoI	RAATTY	2 cut(s)	48, 621
AspLEI	GCGC	1 cut(s)	803
AspS9I	GGNCC	2 cut(s)	526, 666
AsuHPI	GGTGA	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	666
BauI	CACGAG	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	540, 619
BccI	CCATC	2 cut(s)	70, 187
BciT130I	CCWGG	3 cut(s)	389, 408, 524
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	746, 760
BfmI	CTRYAG	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	2 cut(s)	554, 608
BlsI	GCNGC	2 cut(s)	555, 609
Bme1390I	CCNGG	3 cut(s)	389, 408, 524
Bme18I	GGWCC	1 cut(s)	666
BmgT120I	GGNCC	2 cut(s)	526, 666
BmiI	GGNNCC	2 cut(s)	247, 667
BmrFI	CCNGG	3 cut(s)	389, 408, 524
BmsI	GCATC	3 cut(s)	13, 191, 564
BoxI	GACNNNNGTC	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	114, 578
BsaJI	CCNNGG	3 cut(s)	145, 260, 465
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 661, 675, 726
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	629, 647
BseBI	CCWGG	3 cut(s)	389, 408, 524
BseDI	CCNNGG	3 cut(s)	145, 260, 465
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	4 cut(s)	111, 661, 675, 726
BseMI	GCAATG	2 cut(s)	629, 647
BseMII	CTCAG	5 cut(s)	28, 209, 445, 580, 802
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	540, 619
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	1 cut(s)	527
BslFI	GGGAC	3 cut(s)	216, 679, 691
BslI	CCNNNNNNNGG	4 cut(s)	111, 661, 675, 726
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	3 cut(s)	216, 679, 691
BsnI	GGCC	1 cut(s)	527
Bsp143I	GATC	2 cut(s)	276, 426
BspACI	CCGC	2 cut(s)	763, 799
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	5 cut(s)	27, 210, 444, 579, 801
BspFNI	CGCG	1 cut(s)	801
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	247, 667
BspPI	GGATC	2 cut(s)	284, 421
BspTI	CTTAAG	1 cut(s)	283
BsrDI	GCAATG	2 cut(s)	629, 647
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	145, 260, 465
BssMI	GATC	2 cut(s)	276, 426
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	3 cut(s)	145, 260, 465
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	3 cut(s)	389, 408, 524
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	542
BstAFI	CTTAAG	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	36, 594
BstDEI	CTNAG	5 cut(s)	14, 218, 431, 566, 788
BstF5I	GGATG	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	801
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	2 cut(s)	279, 429
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	2 cut(s)	276, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	451, 519, 640, 649, 798
BstNI	CCWGG	3 cut(s)	389, 408, 524
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	387, 406, 522
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	2 cut(s)	540, 619
BstX2I	RGATCY	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	2 cut(s)	36, 594
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	803
Cfr13I	GGNCC	2 cut(s)	526, 666
CviAII	CATG	8 cut(s)	8, 100, 162, 187, 517, 537, 721, 818
DdeI	CTNAG	5 cut(s)	14, 218, 431, 566, 788
DpnI	GATC	2 cut(s)	278, 428
DpnII	GATC	2 cut(s)	276, 426
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	3 cut(s)	145, 260, 465
Eco47I	GGWCC	1 cut(s)	666
EcoRII	CCWGG	3 cut(s)	387, 406, 522
EcoT14I	CCWWGG	3 cut(s)	145, 260, 465
ErhI	CCWWGG	3 cut(s)	145, 260, 465
FaeI	CATG	8 cut(s)	11, 103, 165, 190, 520, 540, 724, 821
FaqI	GGGAC	3 cut(s)	216, 679, 691
FatI	CATG	8 cut(s)	7, 99, 161, 186, 516, 536, 720, 817
FauI	CCCGC	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	554, 608
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	554, 608
FspBI	CTAG	2 cut(s)	746, 760
GlaI	GCGC	1 cut(s)	802
GluI	GCNGC	2 cut(s)	554, 608
GsuI	CTGGAG	2 cut(s)	114, 578
HaeIII	GGCC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	803
Hin1II	CATG	8 cut(s)	11, 103, 165, 190, 520, 540, 724, 821
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HindIII	AAGCTT	2 cut(s)	139, 511
HinfI	GANTC	3 cut(s)	96, 123, 165
HphI	GGTGA	1 cut(s)	741
Hpy188I	TCNGA	1 cut(s)	716
Hpy188III	TCNNGA	4 cut(s)	88, 100, 169, 568
HpyAV	CCTTC	3 cut(s)	166, 193, 733
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	4, 592, 607, 652, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	451, 519, 640, 649, 798
HpyF3I	CTNAG	5 cut(s)	14, 218, 431, 566, 788
Hsp92II	CATG	8 cut(s)	11, 103, 165, 190, 520, 540, 724, 821
HspAI	GCGC	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	276, 426
LmnI	GCTCC	2 cut(s)	264, 640
Lsp1109I	GCAGC	2 cut(s)	540, 619
LweI	GCATC	3 cut(s)	13, 191, 564
MaeI	CTAG	2 cut(s)	746, 760
MaeIII	GTNAC	2 cut(s)	300, 355
MalI	GATC	2 cut(s)	278, 428
MboI	GATC	2 cut(s)	276, 426
MboII	GAAGA	2 cut(s)	132, 559
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	426
MluCI	AATT	6 cut(s)	48, 131, 252, 621, 658, 734
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	479
MseI	TTAA	3 cut(s)	53, 284, 509
MslI	CAYNNNNRTG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	283
MspR9I	CCNGG	3 cut(s)	389, 408, 524
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	3 cut(s)	389, 408, 524
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	5 cut(s)	451, 519, 640, 649, 798
NdeII	GATC	2 cut(s)	276, 426
NlaIII	CATG	8 cut(s)	11, 103, 165, 190, 520, 540, 724, 821
NlaIV	GGNNCC	2 cut(s)	247, 667
NmuCI	GTSAC	2 cut(s)	300, 355
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	123, 165
PflMI	CCANNNNNTGG	2 cut(s)	661, 726
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	555, 609
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	95
Psp6I	CCWGG	3 cut(s)	387, 406, 522
PspGI	CCWGG	3 cut(s)	387, 406, 522
PspN4I	GGNNCC	2 cut(s)	247, 667
PspPI	GGNCC	2 cut(s)	526, 666
PsuI	RGATCY	1 cut(s)	426
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	53, 284, 509
SatI	GCNGC	2 cut(s)	554, 608
Sau3AI	GATC	2 cut(s)	276, 426
Sau96I	GGNCC	2 cut(s)	526, 666
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	3 cut(s)	389, 408, 524
SfaNI	GCATC	3 cut(s)	13, 191, 564
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	6 cut(s)	48, 131, 252, 621, 658, 734
SsiI	CCGC	2 cut(s)	763, 799
SspMI	CTAG	2 cut(s)	746, 760
StyD4I	CCNGG	3 cut(s)	387, 406, 522
StyI	CCWWGG	3 cut(s)	145, 260, 465
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	170, 703
TasI	AATT	6 cut(s)	48, 131, 252, 621, 658, 734
TfiI	GAWTC	2 cut(s)	123, 165
Tru1I	TTAA	3 cut(s)	53, 284, 509
Tru9I	TTAA	3 cut(s)	53, 284, 509
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	2 cut(s)	300, 355
TseI	GCWGC	2 cut(s)	553, 607
Tsp45I	GTSAC	2 cut(s)	300, 355
TspDTI	ATGAA	4 cut(s)	434, 452, 505, 737
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	784
Van91I	CCANNNNNTGG	2 cut(s)	661, 726
Vha464I	CTTAAG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	2 cut(s)	48, 621
XspI	CTAG	2 cut(s)	746, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.