Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

4674104 .. 4677368

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG064700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATATGGAAGGCACGCCGAGTCTCCATGGATACTACATGCCTGCAGAGTGGGAGCCTCATTCACAGTGCTGGATTGGATGGCCTGAGCGCCCAGATAACTGGAGAAACAATGCAGTGCCTGGTCAGTTGGTGTTTGCAAGGGTAGCATCTGCAATCTCAAAGTTTGAGCCTGTCACCGTGTGTGCCAGTGGTGCTCAGTGGGCAAATGCACGAAGTCAGCTACCAGAAAATGTCAGGGTTGTCGAGATGAGTTTGAATGATTCTTGGTTTCGTGATACAGGCCCGACGATTGTCATAGGAAGAAGTGCATCATGTTCTCAGCAAGAGCCAAAGGTTGCTGGCATTGATTGGAATTTTAACAGTTGGGGAGGTGTTGATGATGGTTGTTATCCAGACTGGAGTCATGACCTCCTTGTGGCACAGAAGATTCTGGCAATTGAGAAGCTTCCAAGGTTTCCACATACCTTGATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGCCTCACTACTGAGGAGTGCCTCCTAAATAAAAACAGGAACCCTAATTTGACCAAGGAGCAAATAGAGGATCAACTTAAGGCATATCTTGGAGTGACGAAGATTATTTGGTTGCCTCGTGGATTATATGGAGATGATGATACTAATGGTCACATCGACAATATGTGCTGTTTTGTGAAGCCTGGTGTGGTTTTGTTGTCCTGGACCGATGATGAAACAGATCCTCAGTATGAACGAGCTGTAGAAGCCCTTTCCGTCCTCGGCAATACTACTGATGCCAAGGGTAGGAAGTTGGAAGTGATTAAGCTTCATGTGCCAGGCCCACTATACATGACAGAGGAAGAGGCTGCTGGAGTTTCTCAGGACGATGCTAAACCAAGACTTGCAGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACATTGCCAATGGAGCAATCATTGCACCACAATTTGGGGACCAGAAATGGGACGATGAGGCTGTTCGTGTCCTATCGAAAGCCTTTCCGAACCATGAAGTGGTGAAAATTGAAGGTGCTAGGGAGATTGTTCTAGCGGGTGGAAACATACACTGCATAACTCAGCAACAACCGCGCGGTATTGTCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

375

Amino Acids

41.52

Weight (kDa)

4.96

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	14 - 369	4e-128	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	968, 1033
AccII	CGCG	2 cut(s)	1108, 1110
AciI	CCGC	3 cut(s)	1070, 1106, 1110
AclWI	GGATC	2 cut(s)	591, 728
AcsI	RAATTY	2 cut(s)	355, 928
AdeI	CACNNNGTG	1 cut(s)	183
AfiI	CCNNNNNNNGG	5 cut(s)	418, 798, 968, 982, 1033
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	259, 1046
AjnI	CCWGG	4 cut(s)	121, 694, 713, 829
AluBI	AGCT	5 cut(s)	223, 448, 752, 820, 917
AluI	AGCT	5 cut(s)	223, 448, 752, 820, 917
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	591, 728
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	83, 283, 832
ApeKI	GCWGC	2 cut(s)	860, 914
ApoI	RAATTY	2 cut(s)	355, 928
AspLEI	GCGC	2 cut(s)	93, 1110
AspS9I	GGNCC	4 cut(s)	284, 717, 833, 973
AsuHPI	GGTGA	2 cut(s)	169, 1048
AvaII	GGWCC	2 cut(s)	717, 973
BauI	CACGAG	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	847, 926
BccI	CCATC	3 cut(s)	75, 377, 494
BciT130I	CCWGG	4 cut(s)	123, 696, 715, 831
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	1053, 1067
BfmI	CTRYAG	2 cut(s)	45, 753
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	861, 915
BlsI	GCNGC	2 cut(s)	862, 916
Bme1390I	CCNGG	4 cut(s)	123, 696, 715, 831
Bme18I	GGWCC	2 cut(s)	717, 973
BmgT120I	GGNCC	4 cut(s)	284, 717, 833, 973
BmiI	GGNNCC	3 cut(s)	57, 554, 974
BmrFI	CCNGG	4 cut(s)	123, 696, 715, 831
BmsI	GCATC	5 cut(s)	158, 320, 498, 778, 871
BoxI	GACNNNNGTC	2 cut(s)	293, 402
BpmI	CTGGAG	3 cut(s)	124, 421, 885
Bpu10I	CCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	5 cut(s)	28, 452, 567, 772, 792
Bsc4I	CCNNNNNNNGG	5 cut(s)	418, 798, 968, 982, 1033
Bse1I	ACTGG	3 cut(s)	107, 189, 404
Bse3DI	GCAATG	2 cut(s)	936, 954
BseBI	CCWGG	4 cut(s)	123, 696, 715, 831
BseDI	CCNNGG	5 cut(s)	28, 452, 567, 772, 792
BseGI	GGATG	2 cut(s)	86, 489
BseLI	CCNNNNNNNGG	5 cut(s)	418, 798, 968, 982, 1033
BseMI	GCAATG	2 cut(s)	936, 954
BseMII	CTCAG	7 cut(s)	78, 212, 335, 516, 752, 887, 1109
BseNI	ACTGG	3 cut(s)	107, 189, 404
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	847, 926
Bsh1236I	CGCG	2 cut(s)	1108, 1110
BshFI	GGCC	3 cut(s)	85, 285, 834
BsiHKAI	GWGCWC	1 cut(s)	199
BslFI	GGGAC	3 cut(s)	523, 986, 998
BslI	CCNNNNNNNGG	5 cut(s)	418, 798, 968, 982, 1033
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	3 cut(s)	523, 986, 998
BsnI	GGCC	3 cut(s)	85, 285, 834
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	583, 733
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	1070, 1106, 1110
BspANI	GGCC	3 cut(s)	85, 285, 834
BspCNI	CTCAG	7 cut(s)	79, 211, 334, 517, 751, 886, 1108
BspFNI	CGCG	2 cut(s)	1108, 1110
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	57, 554, 974
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	591, 728
BspTI	CTTAAG	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	936, 954
BsrI	ACTGG	3 cut(s)	107, 189, 404
BssECI	CCNNGG	5 cut(s)	28, 452, 567, 772, 792
BssMI	GATC	2 cut(s)	583, 733
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	4 cut(s)	28, 452, 567, 792
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	4 cut(s)	123, 696, 715, 831
Bst4CI	ACNGT	3 cut(s)	69, 181, 365
Bst6I	CTCTTC	1 cut(s)	849
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstC8I	GCNNGC	4 cut(s)	17, 45, 343, 901
BstDEI	CTNAG	7 cut(s)	87, 198, 321, 525, 738, 873, 1095
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	86, 489
BstFNI	CGCG	2 cut(s)	1108, 1110
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	93, 1110
BstKTI	GATC	2 cut(s)	586, 736
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	583, 733
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 194, 203, 758, 826, 947, 956, 1105
BstNI	CCWGG	4 cut(s)	123, 696, 715, 831
BstNSI	RCATGY	1 cut(s)	43
BstPAI	GACNNNNGTC	2 cut(s)	293, 402
BstSCI	CCNGG	4 cut(s)	121, 694, 713, 829
BstSFI	CTRYAG	2 cut(s)	45, 753
BstUI	CGCG	2 cut(s)	1108, 1110
BstV1I	GCAGC	2 cut(s)	847, 926
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	2 cut(s)	102, 500
BstYI	RGATCY	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	85, 285, 834
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	86, 489
BtsI	GCAGTG	2 cut(s)	123, 1084
BtsIMutI	CAGTG	5 cut(s)	74, 123, 196, 206, 1084
Cac8I	GCNNGC	4 cut(s)	17, 45, 343, 901
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	2 cut(s)	93, 1110
Cfr13I	GGNCC	4 cut(s)	284, 717, 833, 973
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	9 cut(s)	29, 40, 315, 407, 494, 824, 844, 1028, 1125
DdeI	CTNAG	7 cut(s)	87, 198, 321, 525, 738, 873, 1095
DpnI	GATC	2 cut(s)	585, 735
DpnII	GATC	2 cut(s)	583, 733
DraIII	CACNNNGTG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	4 cut(s)	28, 452, 567, 792
Eco47I	GGWCC	2 cut(s)	717, 973
EcoRII	CCWGG	4 cut(s)	121, 694, 713, 829
EcoT14I	CCWWGG	4 cut(s)	28, 452, 567, 792
ErhI	CCWWGG	4 cut(s)	28, 452, 567, 792
FaeI	CATG	9 cut(s)	32, 43, 318, 410, 497, 827, 847, 1031, 1128
FaqI	GGGAC	3 cut(s)	523, 986, 998
FatI	CATG	9 cut(s)	28, 39, 314, 406, 493, 823, 843, 1027, 1124
FauI	CCCGC	1 cut(s)	1063
Fnu4HI	GCNGC	2 cut(s)	861, 915
FokI	GGATG	2 cut(s)	93, 476
Fsp4HI	GCNGC	2 cut(s)	861, 915
FspBI	CTAG	2 cut(s)	1053, 1067
GlaI	GCGC	2 cut(s)	92, 1109
GluI	GCNGC	2 cut(s)	861, 915
GsuI	CTGGAG	3 cut(s)	124, 421, 885
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	85, 285, 834
HhaI	GCGC	2 cut(s)	93, 1110
Hin1II	CATG	9 cut(s)	32, 43, 318, 410, 497, 827, 847, 1031, 1128
Hin6I	GCGC	2 cut(s)	91, 1108
HinP1I	GCGC	2 cut(s)	91, 1108
HindIII	AAGCTT	2 cut(s)	446, 818
HinfI	GANTC	5 cut(s)	22, 263, 403, 430, 472
HphI	GGTGA	2 cut(s)	169, 1048
Hpy188I	TCNGA	1 cut(s)	1023
Hpy188III	TCNNGA	6 cut(s)	247, 275, 395, 407, 476, 875
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	5, 473, 500, 1040
HpyCH4III	ACNGT	3 cut(s)	69, 181, 365
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 194, 203, 758, 826, 947, 956, 1105
HpyF3I	CTNAG	7 cut(s)	87, 198, 321, 525, 738, 873, 1095
Hsp92II	CATG	9 cut(s)	32, 43, 318, 410, 497, 827, 847, 1031, 1128
HspAI	GCGC	2 cut(s)	91, 1108
Kzo9I	GATC	2 cut(s)	583, 733
LmnI	GCTCC	3 cut(s)	55, 571, 947
Lsp1109I	GCAGC	2 cut(s)	847, 926
LweI	GCATC	5 cut(s)	158, 320, 498, 778, 871
MaeI	CTAG	2 cut(s)	1053, 1067
MaeIII	GTNAC	3 cut(s)	175, 607, 662
MalI	GATC	2 cut(s)	585, 735
MboI	GATC	2 cut(s)	583, 733
MboII	GAAGA	4 cut(s)	315, 439, 625, 866
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	6 cut(s)	355, 438, 559, 928, 965, 1041
MlyI	GAGTC	2 cut(s)	31, 412
MmeI	TCCRAC	1 cut(s)	786
MseI	TTAA	3 cut(s)	360, 591, 816
MslI	CAYNNNNRTG	1 cut(s)	498
MspCI	CTTAAG	1 cut(s)	590
MspR9I	CCNGG	4 cut(s)	123, 696, 715, 831
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	4 cut(s)	123, 696, 715, 831
MvnI	CGCG	2 cut(s)	1108, 1110
MwoI	GCNNNNNNNGC	8 cut(s)	146, 194, 203, 758, 826, 947, 956, 1105
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	583, 733
NlaIII	CATG	9 cut(s)	32, 43, 318, 410, 497, 827, 847, 1031, 1128
NlaIV	GGNNCC	3 cut(s)	57, 554, 974
NmeAIII	GCCGAG	2 cut(s)	45, 753
NmuCI	GTSAC	3 cut(s)	175, 607, 662
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	263, 430, 472
PflMI	CCANNNNNTGG	2 cut(s)	968, 1033
PfoI	TCCNGGA	1 cut(s)	713
PkrI	GCNGC	2 cut(s)	862, 916
PleI	GAGTC	2 cut(s)	30, 411
PpsI	GAGTC	2 cut(s)	30, 411
PshAI	GACNNNNGTC	2 cut(s)	293, 402
Psp6I	CCWGG	4 cut(s)	121, 694, 713, 829
PspGI	CCWGG	4 cut(s)	121, 694, 713, 829
PspN4I	GGNNCC	3 cut(s)	57, 554, 974
PspPI	GGNCC	4 cut(s)	284, 717, 833, 973
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	360, 591, 816
SatI	GCNGC	2 cut(s)	861, 915
Sau3AI	GATC	2 cut(s)	583, 733
Sau96I	GGNCC	4 cut(s)	284, 717, 833, 973
SchI	GAGTC	2 cut(s)	31, 412
ScrFI	CCNGG	4 cut(s)	123, 696, 715, 831
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	5 cut(s)	158, 320, 498, 778, 871
SfcI	CTRYAG	2 cut(s)	45, 753
SinI	GGWCC	2 cut(s)	717, 973
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	355, 438, 559, 928, 965, 1041
SsiI	CCGC	3 cut(s)	1070, 1106, 1110
SspMI	CTAG	2 cut(s)	1053, 1067
StyD4I	CCNGG	4 cut(s)	121, 694, 713, 829
StyI	CCWWGG	4 cut(s)	28, 452, 567, 792
TaaI	ACNGT	3 cut(s)	69, 181, 365
TaqI	TCGA	4 cut(s)	246, 477, 669, 1010
TaqII	GACCGA	1 cut(s)	734
TasI	AATT	6 cut(s)	355, 438, 559, 928, 965, 1041
TfiI	GAWTC	3 cut(s)	263, 430, 472
Tru1I	TTAA	3 cut(s)	360, 591, 816
Tru9I	TTAA	3 cut(s)	360, 591, 816
TscAI	CASTG	5 cut(s)	74, 123, 196, 206, 1091
TseFI	GTSAC	3 cut(s)	175, 607, 662
TseI	GCWGC	2 cut(s)	860, 914
Tsp45I	GTSAC	3 cut(s)	175, 607, 662
TspDTI	ATGAA	4 cut(s)	741, 759, 812, 1044
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	5 cut(s)	74, 123, 196, 206, 1091
Van91I	CCANNNNNTGG	2 cut(s)	968, 1033
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	717, 973
XapI	RAATTY	2 cut(s)	355, 928
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	1053, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.