Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

22262834 .. 22267334

Gene Structure 4501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18540.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGATGGAAGGCACGCCGGCTGTCCATGGATACTACATGCCTGCAGAGTGGGAACCCCATTCCCAGTGCTGGATTGGATGGCCTGAACGCCCGGATAACTGGAGAGACAATGCAGTGCCTGCTCAACAGGTGTTTAAGAAGGTGGCATCTGCAATCTCAAAGTTTGAGCCTGTGACCGTCTGCGCGAGTGCCAATCAGTGGGCAAATGCACGAAGTCAGCTACCAGAAAATGTCAGGGTTATCGAGATGAGTTTGAATGATTCTTGGTTTCGTGATACAGGACCGACCTTTGTCGTAGGAAAAAGTGCATCTTGTTCTGGTACACGAGAGGCAAAGGTTGCTGGTATTGATTGGAATTTCAACAGTTGGGGAGGCATTGATGATGGTTGTTATCGAGATTGGAGTCATGATCTTCTTGTGGCACAAAAGATCCTGGAAATTGAGAAGCTTCCAAGGTTTCAACACTCCATGATTCTCGAAGGTGGAAGCATCCATGTCGATGGAGAAGGGACTTGCCTCACCACCGAGGAGTGCCTGTTAAATAAAAACAGAAACCCACATTTGACCAAGGAGCAAATAGAGGATCAACTTAAGGCATATCTCGGAGTGACAAAAATCATTTGGTTGCCTCGTGGATTATACGGAGACGATGATACTAATGGTCACATTGACAGTCTGTGCTGTTTTGCAAAGCCTGGTGTGGTTTTGTTGTCGTGGACTGATGATGAAACGGATCCTCAGTATGAAAGAGCTGTAGAAGCCGTTTCTGTTCTCTCCAATACTACTGATGCCAAGGGTAGGAAATTAGAAATAATAAAACTTCACGTACCAGGGCCGCTGTATATGACAGAGAGAGAGGCTGCCGGACTTTTTCAGGAGGAGTGCGAAGCTAAACCGAGACTTGCAGGCATGAGACTTGCTGCTTCATATGTAAATTTCTACATTGCAAATGGAGCAATCATTGCACCCCAATTCGGGGACCAGAAATGGGATGATGAGGCTGTTCGCGTCCTATCCAAAACCTTCCCAAACCATGAAGTGGTAAGAATTGAAGGCGCAAGGGAGATTGTTCTGGCGGGCGGAAATATACATTGCATTACTCAGCAACAACCATGCGTTCCGCTCAGTATCGTCAACCATGATTCCTTTCATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

387

Amino Acids

43.15

Weight (kDa)

5.28

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	201, 1042
AccBSI	CCGCTC	1 cut(s)	1126
AccII	CGCG	2 cut(s)	188, 1011
AciI	CCGC	4 cut(s)	839, 1079, 1083, 1124
AclWI	GGATC	4 cut(s)	427, 594, 731, 744
AcsI	RAATTY	2 cut(s)	358, 937
AfaI	GTAC	2 cut(s)	325, 831
AfiI	CCNNNNNNNGG	8 cut(s)	72, 201, 801, 977, 978, 979, 991, 1042
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	259, 364, 464, 1055
AjnI	CCWGG	3 cut(s)	435, 697, 832
AluBI	AGCT	4 cut(s)	223, 451, 755, 893
AluI	AGCT	4 cut(s)	223, 451, 755, 893
Alw26I	GTCTC	4 cut(s)	102, 642, 895, 910
AlwI	GGATC	4 cut(s)	427, 594, 731, 744
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	2 cut(s)	83, 836
ApeKI	GCWGC	2 cut(s)	863, 923
ApoI	RAATTY	2 cut(s)	358, 937
AspLEI	GCGC	2 cut(s)	188, 1061
AspS9I	GGNCC	3 cut(s)	284, 836, 982
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	2 cut(s)	284, 982
BamHI	GGATCC	1 cut(s)	736
BauI	CACGAG	2 cut(s)	327, 633
BbvI	GCAGC	2 cut(s)	850, 910
BccI	CCATC	3 cut(s)	75, 380, 497
BceAI	ACGGC	1 cut(s)	749
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	3 cut(s)	437, 699, 834
BciVI	GTATCC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	4 cut(s)	102, 642, 895, 910
BfmI	CTRYAG	2 cut(s)	45, 756
BfrI	CTTAAG	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	839, 864, 924
BlsI	GCNGC	3 cut(s)	840, 865, 925
Bme1390I	CCNGG	4 cut(s)	95, 437, 699, 834
Bme18I	GGWCC	2 cut(s)	284, 982
BmgT120I	GGNCC	3 cut(s)	284, 836, 982
BmiI	GGNNCC	3 cut(s)	57, 738, 983
BmrFI	CCNGG	4 cut(s)	95, 437, 699, 834
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	4 cut(s)	158, 320, 501, 781
BmuI	ACTGGG	1 cut(s)	61
BoxI	GACNNNNGTC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	829
BsaJI	CCNNGG	6 cut(s)	28, 455, 528, 570, 795, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	8 cut(s)	72, 201, 801, 977, 978, 979, 991, 1042
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	2 cut(s)	67, 107
Bse3DI	GCAATG	3 cut(s)	945, 963, 1093
BseBI	CCWGG	3 cut(s)	437, 699, 834
BseDI	CCNNGG	6 cut(s)	28, 455, 528, 570, 795, 833
BseGI	GGATG	3 cut(s)	86, 492, 1000
BseLI	CCNNNNNNNGG	8 cut(s)	72, 201, 801, 977, 978, 979, 991, 1042
BseMI	GCAATG	3 cut(s)	945, 963, 1093
BseMII	CTCAG	3 cut(s)	755, 1118, 1141
BseNI	ACTGG	2 cut(s)	67, 107
BseRI	GAGGAG	2 cut(s)	545, 896
BseXI	GCAGC	2 cut(s)	850, 910
Bsh1236I	CGCG	2 cut(s)	188, 1011
BshFI	GGCC	2 cut(s)	85, 838
BsiSI	CCGG	3 cut(s)	20, 95, 867
BslFI	GGGAC	2 cut(s)	526, 995
BslI	CCNNNNNNNGG	8 cut(s)	72, 201, 801, 977, 978, 979, 991, 1042
BsmAI	GTCTC	4 cut(s)	102, 642, 895, 910
BsmBI	CGTCTC	1 cut(s)	642
BsmFI	GGGAC	2 cut(s)	526, 995
BsnI	GGCC	2 cut(s)	85, 838
Bsp143I	GATC	4 cut(s)	412, 432, 586, 736
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	4 cut(s)	839, 1079, 1083, 1124
BspANI	GGCC	2 cut(s)	85, 838
BspCNI	CTCAG	3 cut(s)	754, 1117, 1140
BspFNI	CGCG	2 cut(s)	188, 1011
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	57, 738, 983
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	4 cut(s)	427, 594, 731, 744
BspTI	CTTAAG	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	1126
BsrDI	GCAATG	3 cut(s)	945, 963, 1093
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	67, 107
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	6 cut(s)	28, 455, 528, 570, 795, 833
BssMI	GATC	4 cut(s)	412, 432, 586, 736
BssSI	CACGAG	2 cut(s)	327, 633
BssT1I	CCWWGG	4 cut(s)	28, 455, 570, 795
Bst2BI	CACGAG	2 cut(s)	327, 633
Bst2UI	CCWGG	3 cut(s)	437, 699, 834
Bst4CI	ACNGT	3 cut(s)	181, 368, 677
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	3 cut(s)	122, 341, 965
BstBAI	YACGTR	1 cut(s)	829
BstC8I	GCNNGC	6 cut(s)	17, 21, 45, 123, 910, 1081
BstDEI	CTNAG	3 cut(s)	741, 1104, 1127
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	3 cut(s)	86, 492, 1000
BstFNI	CGCG	2 cut(s)	188, 1011
BstHHI	GCGC	2 cut(s)	188, 1061
BstKTI	GATC	4 cut(s)	415, 435, 589, 739
BstMAI	GTCTC	4 cut(s)	102, 642, 895, 910
BstMBI	GATC	4 cut(s)	412, 432, 586, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 341, 761, 956, 965
BstNI	CCWGG	3 cut(s)	437, 699, 834
BstNSI	RCATGY	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	93, 435, 697, 832
BstSFI	CTRYAG	2 cut(s)	45, 756
BstUI	CGCG	2 cut(s)	188, 1011
BstV1I	GCAGC	2 cut(s)	850, 910
BstX2I	RGATCY	2 cut(s)	432, 736
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	2 cut(s)	432, 736
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	85, 838
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	86, 492, 1000
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	74, 123, 206
Cac8I	GCNNGC	6 cut(s)	17, 21, 45, 123, 910, 1081
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	2 cut(s)	188, 1061
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	284, 836, 982
CseI	GACGC	1 cut(s)	1000
Csp6I	GTAC	2 cut(s)	324, 830
CviAII	CATG	9 cut(s)	29, 40, 410, 472, 497, 913, 1037, 1116, 1142
CviQI	GTAC	2 cut(s)	324, 830
DdeI	CTNAG	3 cut(s)	741, 1104, 1127
DpnI	GATC	4 cut(s)	414, 434, 588, 738
DpnII	GATC	4 cut(s)	412, 432, 586, 736
EciI	GGCGGA	1 cut(s)	1098
Eco130I	CCWWGG	4 cut(s)	28, 455, 570, 795
Eco47I	GGWCC	2 cut(s)	284, 982
EcoRII	CCWGG	3 cut(s)	435, 697, 832
EcoT14I	CCWWGG	4 cut(s)	28, 455, 570, 795
ErhI	CCWWGG	4 cut(s)	28, 455, 570, 795
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	9 cut(s)	32, 43, 413, 475, 500, 916, 1040, 1119, 1145
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	2 cut(s)	526, 995
FatI	CATG	9 cut(s)	28, 39, 409, 471, 496, 912, 1036, 1115, 1141
FauI	CCCGC	1 cut(s)	1072
FauNDI	CATATG	1 cut(s)	931
Fnu4HI	GCNGC	3 cut(s)	839, 864, 924
FokI	GGATG	3 cut(s)	93, 479, 1007
Fsp4HI	GCNGC	3 cut(s)	839, 864, 924
GlaI	GCGC	2 cut(s)	187, 1060
GluI	GCNGC	3 cut(s)	839, 864, 924
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	85, 838
HapII	CCGG	3 cut(s)	20, 95, 867
HgaI	GACGC	1 cut(s)	1000
HhaI	GCGC	2 cut(s)	188, 1061
Hin1II	CATG	9 cut(s)	32, 43, 413, 475, 500, 916, 1040, 1119, 1145
Hin6I	GCGC	2 cut(s)	186, 1059
HinP1I	GCGC	2 cut(s)	186, 1059
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	4 cut(s)	263, 406, 475, 1145
HpaII	CCGG	3 cut(s)	20, 95, 867
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	3 cut(s)	326, 720, 1138
Hpy188I	TCNGA	1 cut(s)	608
Hpy188III	TCNNGA	6 cut(s)	247, 275, 398, 410, 479, 878
Hpy8I	GTNNAC	3 cut(s)	326, 720, 1138
HpyAV	CCTTC	6 cut(s)	5, 136, 476, 503, 1036, 1049
HpyCH4III	ACNGT	3 cut(s)	181, 368, 677
HpyCH4IV	ACGT	1 cut(s)	828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 341, 761, 956, 965
HpyF3I	CTNAG	3 cut(s)	741, 1104, 1127
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	9 cut(s)	32, 43, 413, 475, 500, 916, 1040, 1119, 1145
HspAI	GCGC	2 cut(s)	186, 1059
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	412, 432, 586, 736
LmnI	GCTCC	2 cut(s)	574, 956
Lsp1109I	GCAGC	2 cut(s)	850, 910
LweI	GCATC	4 cut(s)	158, 320, 501, 781
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	175, 610, 665
MalI	GATC	4 cut(s)	414, 434, 588, 738
MbiI	CCGCTC	1 cut(s)	1126
MboI	GATC	4 cut(s)	412, 432, 586, 736
MboII	GAAGA	2 cut(s)	16, 407
MflI	RGATCY	2 cut(s)	432, 736
MluCI	AATT	6 cut(s)	358, 441, 806, 937, 974, 1050
MlyI	GAGTC	1 cut(s)	415
MroNI	GCCGGC	1 cut(s)	19
MseI	TTAA	3 cut(s)	138, 542, 594
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	841
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	3 cut(s)	20, 95, 867
MspR9I	CCNGG	4 cut(s)	95, 437, 699, 834
MvaI	CCWGG	3 cut(s)	437, 699, 834
MvnI	CGCG	2 cut(s)	188, 1011
MwoI	GCNNNNNNNGC	5 cut(s)	122, 341, 761, 956, 965
NaeI	GCCGGC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	4 cut(s)	412, 432, 586, 736
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	9 cut(s)	32, 43, 413, 475, 500, 916, 1040, 1119, 1145
NlaIV	GGNNCC	3 cut(s)	57, 738, 983
NmuCI	GTSAC	3 cut(s)	175, 610, 665
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	263, 475, 1145
PflMI	CCANNNNNTGG	2 cut(s)	201, 1042
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	3 cut(s)	840, 865, 925
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Ppu21I	YACGTR	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	435, 697, 832
PspGI	CCWGG	3 cut(s)	435, 697, 832
PspN4I	GGNNCC	3 cut(s)	57, 738, 983
PspPI	GGNCC	3 cut(s)	284, 836, 982
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	432, 736
RsaI	GTAC	2 cut(s)	325, 831
RsaNI	GTAC	2 cut(s)	324, 830
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	138, 542, 594
SatI	GCNGC	3 cut(s)	839, 864, 924
Sau3AI	GATC	4 cut(s)	412, 432, 586, 736
Sau96I	GGNCC	3 cut(s)	284, 836, 982
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	4 cut(s)	95, 437, 699, 834
SfaNI	GCATC	4 cut(s)	158, 320, 501, 781
SfcI	CTRYAG	2 cut(s)	45, 756
SinI	GGWCC	2 cut(s)	284, 982
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	6 cut(s)	358, 441, 806, 937, 974, 1050
SsiI	CCGC	4 cut(s)	839, 1079, 1083, 1124
StyD4I	CCNGG	4 cut(s)	93, 435, 697, 832
StyI	CCWWGG	4 cut(s)	28, 455, 570, 795
TaaI	ACNGT	3 cut(s)	181, 368, 677
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	4 cut(s)	246, 397, 480, 501
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	6 cut(s)	358, 441, 806, 937, 974, 1050
TauI	GCSGC	1 cut(s)	841
TfiI	GAWTC	3 cut(s)	263, 475, 1145
Tru1I	TTAA	3 cut(s)	138, 542, 594
Tru9I	TTAA	3 cut(s)	138, 542, 594
TscAI	CASTG	3 cut(s)	74, 123, 206
TseFI	GTSAC	3 cut(s)	175, 610, 665
TseI	GCWGC	2 cut(s)	863, 923
Tsp45I	GTSAC	3 cut(s)	175, 610, 665
TspDTI	ATGAA	6 cut(s)	17, 744, 762, 918, 1053, 1142
TspGWI	ACGGA	2 cut(s)	660, 749
TspRI	CASTG	3 cut(s)	74, 123, 206
Van91I	CCANNNNNTGG	2 cut(s)	201, 1042
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	284, 982
XapI	RAATTY	2 cut(s)	358, 937
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.