Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

26090679 .. 26094160

Gene Structure 3482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCCTCAAAACCTTGGTCTTTCTCCGCCACCCGCTCCATCTCTCTCTCCCTTCTGCCATCAAAGCTTCCTTTAGCTGGAAACGGTGAGAATCTAATTCAGATTGTTATGGGTTTGAGCAATTTCAGGAAGCTTGGTGTACGAATCGGCGAGGTTAGTGAACAGGTCCGTTCAGTAATTGATAGAGTACAGACTGACAAACTGAAGATTTCATTAGGCGTTGATGATGATTGTTATCCAGACTGGAATCATGACCTCTTTGTGGCATGGAAGATTCTGGCAATTGAGAAGCTTCCAAGGTTTCCACATACCATAATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGCCTCACTACTGAGGAGTGCCTGCTAAATAAAAACAGGAACCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

136

Amino Acids

15.03

Weight (kDa)

6.28

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	78 - 133	2.8e-16	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	2 cut(s)	27, 34
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	141, 189
AfiI	CCNNNNNNNGG	2 cut(s)	77, 262
AluBI	AGCT	4 cut(s)	67, 77, 133, 292
AluI	AGCT	4 cut(s)	67, 77, 133, 292
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	166
BccI	CCATC	3 cut(s)	47, 67, 338
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	398
BmsI	GCATC	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	14, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 262
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	14, 296
BseGI	GGATG	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	77, 262
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	77, 262
BsmFI	GGGAC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	27, 34
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	14, 296
BssT1I	CCWWGG	2 cut(s)	14, 296
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	380
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	140, 188
CviAII	CATG	3 cut(s)	251, 267, 338
CviJI	RGCY	4 cut(s)	67, 77, 133, 292
CviKI_1	RGCY	4 cut(s)	67, 77, 133, 292
CviQI	GTAC	2 cut(s)	140, 188
DdeI	CTNAG	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	14, 296
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	14, 296
ErhI	CCWWGG	2 cut(s)	14, 296
FaeI	CATG	3 cut(s)	254, 270, 341
FaiI	YATR	6 cut(s)	110, 252, 268, 309, 314, 339
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	250, 266, 337
FauI	CCCGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	320
Hin1II	CATG	3 cut(s)	254, 270, 341
HindIII	AAGCTT	3 cut(s)	65, 131, 290
HinfI	GANTC	4 cut(s)	91, 144, 247, 274
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	140, 161
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	127, 239, 251, 320
Hpy8I	GTNNAC	2 cut(s)	140, 161
HpyAV	CCTTC	3 cut(s)	62, 317, 344
HpyCH4III	ACNGT	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	254, 270, 341
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	63, 112, 149, 229, 252, 263, 379, 392
LweI	GCATC	1 cut(s)	342
MbiI	CCGCTC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	217, 283
MfeI	CAATTG	1 cut(s)	282
MluCI	AATT	6 cut(s)	96, 121, 177, 282, 315, 402
MnlI	CCTC	5 cut(s)	16, 145, 266, 364, 371
MslI	CAYNNNNRTG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	254, 270, 341
NlaIV	GGNNCC	1 cut(s)	398
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	4 cut(s)	91, 144, 247, 274
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	2 cut(s)	141, 189
RsaNI	GTAC	2 cut(s)	140, 188
RseI	CAYNNNNRTG	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	342
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	6 cut(s)	96, 121, 177, 282, 315, 402
SsiI	CCGC	2 cut(s)	27, 34
StyI	CCWWGG	2 cut(s)	14, 296
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	321
TasI	AATT	6 cut(s)	96, 121, 177, 282, 315, 402
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	4 cut(s)	91, 144, 247, 274
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.