Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005026.1

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

16014 .. 17090

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005026.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgccttcattgctccatttaaacttctatttttctgggattgtggttttgttgtcctggactgatgatgaaacagatcctcagtatgaacgagctgtagaagccctttccgtcctcagcaatactactgatgccaagggtagaaagttggaagtgattaagcttcatgtgccaggcccactatacatgacagaggaagaggctgctggagtttctcaggacgatgctaaaccgagacttgcaggcacaagacttgcagcttcttatgtgaatttctacattgccaatggagcaatcattgcaccacaatttggggacaagaaatgggacgatgaggctgttcgtgtcctatcgaaagcctttccgaaccatgaagtggtgaaaattgaaggtgctagggagattgttctagcgggtggaaacatacactgcataactcagcaacaaccgcgctgtattgtccaaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

156

Amino Acids

17.21

Weight (kDa)

5.33

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	311, 376
AccII	CGCG	1 cut(s)	451
AciI	CCGC	2 cut(s)	413, 449
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	311, 376
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	56, 172
AluBI	AGCT	3 cut(s)	95, 163, 260
AluI	AGCT	3 cut(s)	95, 163, 260
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	203, 257
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	190, 269
BciT130I	CCWGG	2 cut(s)	58, 174
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	396, 410
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	204, 258
BlsI	GCNGC	2 cut(s)	205, 259
Bme1390I	CCNGG	2 cut(s)	58, 174
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	58, 174
BmsI	GCATC	2 cut(s)	121, 214
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 376
Bse3DI	GCAATG	3 cut(s)	8, 279, 297
BseBI	CCWGG	2 cut(s)	58, 174
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	311, 376
BseMI	GCAATG	3 cut(s)	8, 279, 297
BseMII	CTCAG	4 cut(s)	95, 130, 230, 452
BseXI	GCAGC	2 cut(s)	190, 269
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	329, 341
BslI	CCNNNNNNNGG	2 cut(s)	311, 376
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	329, 341
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	2 cut(s)	413, 449
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	4 cut(s)	94, 129, 229, 451
BspFNI	CGCG	1 cut(s)	451
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	3 cut(s)	8, 279, 297
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	58, 174
Bst6I	CTCTTC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	4 cut(s)	81, 116, 216, 438
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 101, 169, 290, 299, 448
BstNI	CCWGG	2 cut(s)	58, 174
BstSCI	CCNGG	2 cut(s)	56, 172
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	190, 269
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	176
CviAII	CATG	4 cut(s)	167, 187, 371, 468
CviJI	RGCY	8 cut(s)	95, 104, 163, 177, 203, 260, 338, 359
CviKI_1	RGCY	8 cut(s)	95, 104, 163, 177, 203, 260, 338, 359
DdeI	CTNAG	4 cut(s)	81, 116, 216, 438
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraI	TTTAAA	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	56, 172
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	170, 190, 374, 471
FaiI	YATR	9 cut(s)	87, 168, 184, 188, 267, 372, 425, 434, 469
FaqI	GGGAC	2 cut(s)	329, 341
FatI	CATG	4 cut(s)	166, 186, 370, 467
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	204, 258
Fsp4HI	GCNGC	2 cut(s)	204, 258
FspBI	CTAG	2 cut(s)	396, 410
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	2 cut(s)	204, 258
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	170, 190, 374, 471
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	161
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	15, 383
HpyCH4V	TGCA	4 cut(s)	242, 257, 302, 432
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 101, 169, 290, 299, 448
HpyF3I	CTNAG	4 cut(s)	81, 116, 216, 438
Hsp92II	CATG	4 cut(s)	170, 190, 374, 471
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	18, 290
LpnPI	CCDG	8 cut(s)	21, 43, 70, 159, 186, 192, 203, 228
Lsp1109I	GCAGC	2 cut(s)	190, 269
LweI	GCATC	2 cut(s)	121, 214
MaeI	CTAG	2 cut(s)	396, 410
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	3 cut(s)	271, 308, 384
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	90, 125, 187, 193, 328
MseI	TTAA	2 cut(s)	20, 159
MspR9I	CCNGG	2 cut(s)	58, 174
MvaI	CCWGG	2 cut(s)	58, 174
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	6 cut(s)	10, 101, 169, 290, 299, 448
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	170, 190, 374, 471
PflMI	CCANNNNNTGG	2 cut(s)	311, 376
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	205, 259
Psp6I	CCWGG	2 cut(s)	56, 172
PspGI	CCWGG	2 cut(s)	56, 172
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	20, 159
SatI	GCNGC	2 cut(s)	204, 258
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	58, 174
SetI	ASST	4 cut(s)	97, 165, 262, 394
SfaNI	GCATC	2 cut(s)	121, 214
SfcI	CTRYAG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	271, 308, 384
SsiI	CCGC	2 cut(s)	413, 449
SspMI	CTAG	2 cut(s)	396, 410
StyD4I	CCNGG	2 cut(s)	56, 172
StyI	CCWWGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	271, 308, 384
Tru1I	TTAA	2 cut(s)	20, 159
Tru9I	TTAA	2 cut(s)	20, 159
TscAI	CASTG	1 cut(s)	434
TseI	GCWGC	2 cut(s)	203, 257
TspDTI	ATGAA	4 cut(s)	84, 102, 155, 387
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	434
Van91I	CCANNNNNTGG	2 cut(s)	311, 376
XapI	RAATTY	1 cut(s)	271
XspI	CTAG	2 cut(s)	396, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.