Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001017.1

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

68247 .. 72315

Gene Structure 4069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001017.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggtaaggctcgggcttggattggttttggatgctgcgtcgattggtgaagacggtgtggggagatggtggccgaagatggagtctccggtggtggcagagagaaggatagaggaagagagaggccgagtcgatgcatggcttcgatctcttatgggtttaggtcggattgaggtggtgcttcgattggtgactgatgatgaaacagatcctcagtatgaacgagctgtagaagccctttctgtccttggcaatactactgatgtcaagggtaggaagttggaagtgattaagcttcatgtccgaggcccactatacatgaaggaggaagaggctgctggagtttctcaagtaaacactgcagacctggattcaacttctacattaccaatggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

132

Amino Acids

14.64

Weight (kDa)

4.84

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	227, 295
AluI	AGCT	2 cut(s)	227, 295
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	71, 124, 307
ApeKI	GCWGC	2 cut(s)	35, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	59, 202
AvaI	CYCGRG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	22, 322
BccI	CCATC	2 cut(s)	60, 73
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	228, 360
BisI	GCNGC	2 cut(s)	36, 336
BlsI	GCNGC	2 cut(s)	37, 337
Bme1390I	CCNGG	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	22, 124
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	247, 304
BsaWI	WCCGGW	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	2 cut(s)	247, 304
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	22, 322
BshFI	GGCC	3 cut(s)	73, 126, 309
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	73, 126, 309
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	146, 208
BspANI	GGCC	3 cut(s)	73, 126, 309
BspCNI	CTCAG	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	247, 304
BssMI	GATC	2 cut(s)	146, 208
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	2 cut(s)	111, 324
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	149, 211
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	146, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	228, 360
BstV1I	GCAGC	2 cut(s)	22, 322
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	73, 126, 309
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	1 cut(s)	27
CviAII	CATG	3 cut(s)	138, 299, 319
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	148, 210
DpnII	GATC	2 cut(s)	146, 208
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	111, 324
EarI	CTCTTC	2 cut(s)	111, 324
Eco130I	CCWWGG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	141, 302, 322
FaiI	YATR	6 cut(s)	139, 155, 219, 300, 316, 320
FatI	CATG	3 cut(s)	137, 298, 318
Fnu4HI	GCNGC	2 cut(s)	36, 336
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	36, 336
GluI	GCNGC	2 cut(s)	36, 336
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	73, 126, 309
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	141, 302, 322
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	3 cut(s)	83, 129, 371
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	2 cut(s)	59, 202
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	168, 305
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	99, 316
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	137, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	141, 302, 322
Kzo9I	GATC	2 cut(s)	146, 208
LpnPI	CCDG	4 cut(s)	102, 324, 353, 380
Lsp1109I	GCAGC	2 cut(s)	22, 322
LweI	GCATC	2 cut(s)	22, 124
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	148, 210
MboI	GATC	2 cut(s)	146, 208
MboII	GAAGA	4 cut(s)	62, 88, 128, 341
MflI	RGATCY	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	92, 138
MmeI	TCCRAC	2 cut(s)	146, 261
MnlI	CCTC	7 cut(s)	106, 116, 166, 222, 299, 319, 325
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	146, 208
NlaIII	CATG	3 cut(s)	141, 302, 322
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	37, 337
PleI	GAGTC	2 cut(s)	91, 137
PpsI	GAGTC	2 cut(s)	91, 137
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	308
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	36, 336
Sau3AI	GATC	2 cut(s)	146, 208
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	92, 138
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	5 cut(s)	166, 177, 229, 297, 369
SfaNI	GCATC	2 cut(s)	22, 124
SfcI	CTRYAG	2 cut(s)	228, 360
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	4 cut(s)	41, 132, 145, 184
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	35, 335
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	216, 234, 287, 335
TspRI	CASTG	1 cut(s)	364
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.