Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001533.1

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

46242 .. 47221

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001533.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtctttagtaattgatagagtacagactgacaaactgaagatttcattaggcgttgatgatgattgttatccagactggaatcatgacctccttgtggcatggaagattctggcaattgagaagcttccaaggtttccacataccataattctcgaaggtggaagcatccatgtagatggagaagttgcaggcacaagacttgcagcttcttatgtgaatttctatgttgccaatggagcaatcattgcgccacaatttggggaccaaaaatgggacactcatgatgtagcatcaacaaatccaattggtcctgaccaggagcacagagtacctcatggttccattggtgcagcagctggtcatcgagccattgctcagagtaatgctgaggaaatttctgaagctttggttcaatactctgcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

143

Amino Acids

15.51

Weight (kDa)

5.02

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	220, 396
AcuI	CTGAAG	2 cut(s)	59, 423
AfaI	GTAC	2 cut(s)	24, 333
AfiI	CCNNNNNNNGG	3 cut(s)	97, 260, 274
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	4 cut(s)	127, 209, 359, 407
AluI	AGCT	4 cut(s)	127, 209, 359, 407
Alw21I	GWGCWC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	206, 353, 356
ApoI	RAATTY	2 cut(s)	220, 396
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	265, 311
AvaII	GGWCC	2 cut(s)	265, 311
Bbv12I	GWGCWC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	218, 365, 368
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	320
BisI	GCNGC	3 cut(s)	207, 354, 357
BlsI	GCNGC	3 cut(s)	208, 355, 358
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	265, 311
BmgT120I	GGNCC	2 cut(s)	265, 311
BmiI	GGNNCC	2 cut(s)	266, 343
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	177, 302
Bpu10I	CCTNAGC	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 260, 274
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	246, 372
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	97, 260, 274
BseMI	GCAATG	2 cut(s)	246, 372
BseMII	CTCAG	2 cut(s)	381, 392
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	218, 365, 368
BsgI	GTGCAG	2 cut(s)	372, 408
BsiHKAI	GWGCWC	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	278, 290
BslI	CCNNNNNNNGG	3 cut(s)	97, 260, 274
BsmFI	GGGAC	2 cut(s)	278, 290
Bsp1286I	GDGCHC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	382, 391
BspHI	TCATGA	2 cut(s)	85, 283
BspLI	GGNNCC	2 cut(s)	266, 343
BsrDI	GCAATG	2 cut(s)	246, 372
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	378, 390
BstF5I	GGATG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 248
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	218, 365, 368
BstXI	CCANNNNNNTGG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	2 cut(s)	85, 283
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	265, 311
Csp6I	GTAC	2 cut(s)	23, 332
CviAII	CATG	5 cut(s)	86, 102, 173, 284, 338
CviJI	RGCY	5 cut(s)	127, 209, 359, 371, 407
CviKI_1	RGCY	5 cut(s)	127, 209, 359, 371, 407
CviQI	GTAC	2 cut(s)	23, 332
DdeI	CTNAG	2 cut(s)	378, 390
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	265, 311
Eco57I	CTGAAG	2 cut(s)	59, 423
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	5 cut(s)	89, 105, 176, 287, 341
FaqI	GGGAC	2 cut(s)	278, 290
FatI	CATG	5 cut(s)	85, 101, 172, 283, 337
Fnu4HI	GCNGC	3 cut(s)	207, 354, 357
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	207, 354, 357
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	207, 354, 357
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	89, 105, 176, 287, 341
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	2 cut(s)	125, 405
HinfI	GANTC	2 cut(s)	82, 109
Hpy188I	TCNGA	2 cut(s)	381, 403
Hpy188III	TCNNGA	5 cut(s)	74, 86, 155, 284, 314
HpyAV	CCTTC	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	191, 206, 353, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 248
HpyF3I	CTNAG	2 cut(s)	378, 390
Hsp92II	CATG	5 cut(s)	89, 105, 176, 287, 341
HspAI	GCGC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	239, 322
LpnPI	CCDG	8 cut(s)	64, 87, 98, 177, 305, 327, 332, 345
Lsp1109I	GCAGC	3 cut(s)	218, 365, 368
LweI	GCATC	2 cut(s)	177, 302
MboII	GAAGA	2 cut(s)	52, 118
MfeI	CAATTG	2 cut(s)	117, 306
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	7 cut(s)	12, 117, 150, 220, 257, 306, 396
MnlI	CCTC	3 cut(s)	101, 345, 385
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	320
MunI	CAATTG	2 cut(s)	117, 306
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	239, 248
NlaIII	CATG	5 cut(s)	89, 105, 176, 287, 341
NlaIV	GGNNCC	2 cut(s)	266, 343
PagI	TCATGA	2 cut(s)	85, 283
PfeI	GAWTC	2 cut(s)	82, 109
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	208, 355, 358
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	266, 343
PspPI	GGNCC	2 cut(s)	265, 311
PstNI	CAGNNNCTG	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	24, 333
RsaNI	GTAC	2 cut(s)	23, 332
RseI	CAYNNNNRTG	1 cut(s)	177
SatI	GCNGC	3 cut(s)	207, 354, 357
Sau96I	GGNCC	2 cut(s)	265, 311
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	8 cut(s)	93, 129, 137, 163, 211, 337, 361, 409
SfaNI	GCATC	2 cut(s)	177, 302
SinI	GGWCC	2 cut(s)	265, 311
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	7 cut(s)	12, 117, 150, 220, 257, 306, 396
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	131
TaqI	TCGA	2 cut(s)	156, 367
TasI	AATT	7 cut(s)	12, 117, 150, 220, 257, 306, 396
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	82, 109
TseI	GCWGC	3 cut(s)	206, 353, 356
TspDTI	ATGAA	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	265, 311
XapI	RAATTY	2 cut(s)	220, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.