Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

6489203 .. 6493884

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGCACTTGCCTCACTACTGAGGAATGCCTCCTAAATAAAAACAGGAACCCTAATTTGACCAAGGAGCAAATAAAGGATCAACTTAAGGCATATCTTGGAGTGACGAAGATTATTTGGTTGCCCTGTGGATTGTATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

59

Amino Acids

6.53

Weight (kDa)

5.64

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	1 - 59	1.4e-26	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	123
AflII	CTTAAG	1 cut(s)	122
AlwI	GGATC	1 cut(s)	123
BccI	CCATC	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	21
CviAII	CATG	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	29
FaiI	YATR	3 cut(s)	27, 130, 174
FatI	CATG	1 cut(s)	25
FokI	GGATG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	1 cut(s)	4
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	5, 32
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	67, 175
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	157
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	3 cut(s)	52, 59, 77
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	115
SetI	ASST	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	30
SgeI	CNNG	7 cut(s)	20, 38, 57, 94, 112, 146, 174
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	99
TaqI	TCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.