Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Reverse (-)

4491686 .. 4495139

Gene Structure 3454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATATGGAAGGCACGCCGAGTCTCCATGGATACTGCATGCCTGCAGAGTGGGAACCTCATTCACAGTGCTGGATTGGATGGCCTGAGCGCCCAGATAACTGGAGAAACAATGCAGTGCCTGGTCAGTTGGTGTTTGCAAGGGTAGCATCTGCAATCTCAAAGTTTGAGCCTGTCACCGTGTGTGCCAGTGCTGCTCAGTGGGCAAATGCACGAAGTCAGCTACCAGAAAATGTCAGGGTTGTCGAGATGAGTTTGAATGATTCTTGGTTTCGTGATACAGGCCCGACGATTGTCATAGGAAGAAGTGCATCATGTTCTCAGCCAGAGCCAAAGGTTGCTGGCATTGATTGGAATTTTAACAGTTGGGGAGGTGTTGATGATGGTTGTTATCCAGACTGGAGTCATGACCTCCTTGTGGCACGGAAGATTCTGGCAATTGAGAAGCTTCCAAGGTTTCCACATACCATGATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGCCTCACTACTGAGGAGTGCCTCCTAAATAAAAACAGGAACCCTAATTTGACCAAGGAGCAAATAGAGGATCAACTTAAGGCATATCTTGGAGTGACGAAGATTATTTGGTTGCCTCGTGGATTATATGGAGATGATGATACTAATGGTCACATCGACAATATGTGCTGTTTTGTGAAGCCTGGTGTGGTTTTGTTGTCCTGGACTGATGATGAAACAGATCCTCAGTATGAACGAGCTGTAGAAGCCCTTTCCGTCCTCAGCAATACTACTGATGCCAAGGGTAGAAAGTTGGAAGTGATTAAGCTTCATGTGCCAGGCCCACTATACATGACAGAGGAAGAGGCTGCTGGAGTTTCTCAGGACGATGCTAAACCGAGACTTGCAGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACATTGCCAATGGAGCAATCATTGCACCACAATTTGGGGACCAGAAATGGGACAATGAGGCTGTTCGTGTCCTATCGAAAGCCTTTCCGAATCATGAAGTGGTGAGAATTGAAGGTGCTAGGGAGATTGTTCTAGCGGGTGGAAACATACACTGCATAACTCAGCAACAACCGCGCGGTATTGTCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

375

Amino Acids

41.54

Weight (kDa)

5.07

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	14 - 369	1.2e-128	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccII	CGCG	2 cut(s)	1108, 1110
AciI	CCGC	3 cut(s)	1070, 1106, 1110
AclWI	GGATC	2 cut(s)	591, 728
AcsI	RAATTY	2 cut(s)	355, 928
AdeI	CACNNNGTG	1 cut(s)	183
AfiI	CCNNNNNNNGG	3 cut(s)	418, 968, 982
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	259, 1046
AjnI	CCWGG	4 cut(s)	121, 694, 713, 829
AluBI	AGCT	5 cut(s)	223, 448, 752, 820, 917
AluI	AGCT	5 cut(s)	223, 448, 752, 820, 917
Alw26I	GTCTC	2 cut(s)	29, 886
AlwI	GGATC	2 cut(s)	591, 728
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	83, 283, 832
ApeKI	GCWGC	3 cut(s)	194, 860, 914
ApoI	RAATTY	2 cut(s)	355, 928
AspLEI	GCGC	2 cut(s)	93, 1110
AspS9I	GGNCC	3 cut(s)	284, 833, 973
AsuHPI	GGTGA	2 cut(s)	169, 1048
AvaII	GGWCC	1 cut(s)	973
BauI	CACGAG	1 cut(s)	630
BbvCI	CCTCAGC	1 cut(s)	773
BbvI	GCAGC	3 cut(s)	181, 847, 926
BccI	CCATC	3 cut(s)	75, 377, 494
BciT130I	CCWGG	4 cut(s)	123, 696, 715, 831
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	29, 886
BfaI	CTAG	2 cut(s)	1053, 1067
BfmI	CTRYAG	2 cut(s)	45, 753
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	195, 861, 915
BlsI	GCNGC	3 cut(s)	196, 862, 916
Bme1390I	CCNGG	4 cut(s)	123, 696, 715, 831
Bme18I	GGWCC	1 cut(s)	973
BmgT120I	GGNCC	3 cut(s)	284, 833, 973
BmiI	GGNNCC	3 cut(s)	57, 554, 974
BmrFI	CCNGG	4 cut(s)	123, 696, 715, 831
BmsI	GCATC	5 cut(s)	158, 320, 498, 778, 871
BoxI	GACNNNNGTC	2 cut(s)	293, 402
BpmI	CTGGAG	3 cut(s)	124, 421, 885
Bpu10I	CCTNAGC	2 cut(s)	87, 773
BsaJI	CCNNGG	4 cut(s)	28, 452, 567, 792
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 968, 982
Bse1I	ACTGG	3 cut(s)	107, 189, 404
Bse3DI	GCAATG	2 cut(s)	936, 954
BseBI	CCWGG	4 cut(s)	123, 696, 715, 831
BseDI	CCNNGG	4 cut(s)	28, 452, 567, 792
BseGI	GGATG	2 cut(s)	86, 489
BseLI	CCNNNNNNNGG	3 cut(s)	418, 968, 982
BseMI	GCAATG	2 cut(s)	936, 954
BseMII	CTCAG	8 cut(s)	78, 212, 335, 516, 752, 787, 887, 1109
BseNI	ACTGG	3 cut(s)	107, 189, 404
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	181, 847, 926
Bsh1236I	CGCG	2 cut(s)	1108, 1110
BshFI	GGCC	3 cut(s)	85, 285, 834
BslFI	GGGAC	3 cut(s)	523, 986, 998
BslI	CCNNNNNNNGG	3 cut(s)	418, 968, 982
BsmAI	GTCTC	2 cut(s)	29, 886
BsmFI	GGGAC	3 cut(s)	523, 986, 998
BsnI	GGCC	3 cut(s)	85, 285, 834
Bsp143I	GATC	2 cut(s)	583, 733
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	3 cut(s)	1070, 1106, 1110
BspANI	GGCC	3 cut(s)	85, 285, 834
BspCNI	CTCAG	8 cut(s)	79, 211, 334, 517, 751, 786, 886, 1108
BspFNI	CGCG	2 cut(s)	1108, 1110
BspHI	TCATGA	2 cut(s)	406, 1027
BspLI	GGNNCC	3 cut(s)	57, 554, 974
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	591, 728
BspTI	CTTAAG	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	936, 954
BsrI	ACTGG	3 cut(s)	107, 189, 404
BssECI	CCNNGG	4 cut(s)	28, 452, 567, 792
BssMI	GATC	2 cut(s)	583, 733
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	4 cut(s)	28, 452, 567, 792
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	4 cut(s)	123, 696, 715, 831
Bst4CI	ACNGT	3 cut(s)	69, 181, 365
Bst6I	CTCTTC	1 cut(s)	849
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstC8I	GCNNGC	5 cut(s)	17, 41, 45, 343, 901
BstDEI	CTNAG	8 cut(s)	87, 198, 321, 525, 738, 773, 873, 1095
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	86, 489
BstFNI	CGCG	2 cut(s)	1108, 1110
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	93, 1110
BstKTI	GATC	2 cut(s)	586, 736
BstMAI	GTCTC	2 cut(s)	29, 886
BstMBI	GATC	2 cut(s)	583, 733
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 194, 203, 758, 826, 947, 956, 1105
BstNI	CCWGG	4 cut(s)	123, 696, 715, 831
BstNSI	RCATGY	1 cut(s)	43
BstPAI	GACNNNNGTC	2 cut(s)	293, 402
BstSCI	CCNGG	4 cut(s)	121, 694, 713, 829
BstSFI	CTRYAG	2 cut(s)	45, 753
BstUI	CGCG	2 cut(s)	1108, 1110
BstV1I	GCAGC	3 cut(s)	181, 847, 926
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	2 cut(s)	102, 500
BstYI	RGATCY	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	85, 285, 834
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	86, 489
BtsI	GCAGTG	2 cut(s)	123, 1084
BtsIMutI	CAGTG	5 cut(s)	74, 123, 196, 206, 1084
Cac8I	GCNNGC	5 cut(s)	17, 41, 45, 343, 901
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	2 cut(s)	406, 1027
CfoI	GCGC	2 cut(s)	93, 1110
Cfr13I	GGNCC	3 cut(s)	284, 833, 973
DdeI	CTNAG	8 cut(s)	87, 198, 321, 525, 738, 773, 873, 1095
DpnI	GATC	2 cut(s)	585, 735
DpnII	GATC	2 cut(s)	583, 733
DraIII	CACNNNGTG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	4 cut(s)	28, 452, 567, 792
Eco47I	GGWCC	1 cut(s)	973
EcoRII	CCWGG	4 cut(s)	121, 694, 713, 829
EcoT14I	CCWWGG	4 cut(s)	28, 452, 567, 792
ErhI	CCWWGG	4 cut(s)	28, 452, 567, 792
FaqI	GGGAC	3 cut(s)	523, 986, 998
FauI	CCCGC	1 cut(s)	1063
Fnu4HI	GCNGC	3 cut(s)	195, 861, 915
FokI	GGATG	2 cut(s)	93, 476
Fsp4HI	GCNGC	3 cut(s)	195, 861, 915
FspBI	CTAG	2 cut(s)	1053, 1067
GlaI	GCGC	2 cut(s)	92, 1109
GluI	GCNGC	3 cut(s)	195, 861, 915
GsuI	CTGGAG	3 cut(s)	124, 421, 885
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	85, 285, 834
HhaI	GCGC	2 cut(s)	93, 1110
Hin6I	GCGC	2 cut(s)	91, 1108
HinP1I	GCGC	2 cut(s)	91, 1108
HindIII	AAGCTT	2 cut(s)	446, 818
HinfI	GANTC	6 cut(s)	22, 263, 403, 430, 472, 1024
HphI	GGTGA	2 cut(s)	169, 1048
Hpy188I	TCNGA	1 cut(s)	1023
Hpy188III	TCNNGA	7 cut(s)	247, 275, 395, 407, 476, 875, 1028
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	5, 473, 500, 1040
HpyCH4III	ACNGT	3 cut(s)	69, 181, 365
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 194, 203, 758, 826, 947, 956, 1105
HpyF3I	CTNAG	8 cut(s)	87, 198, 321, 525, 738, 773, 873, 1095
HspAI	GCGC	2 cut(s)	91, 1108
Kzo9I	GATC	2 cut(s)	583, 733
LmnI	GCTCC	2 cut(s)	571, 947
Lsp1109I	GCAGC	3 cut(s)	181, 847, 926
LweI	GCATC	5 cut(s)	158, 320, 498, 778, 871
MaeI	CTAG	2 cut(s)	1053, 1067
MaeIII	GTNAC	3 cut(s)	175, 607, 662
MalI	GATC	2 cut(s)	585, 735
MboI	GATC	2 cut(s)	583, 733
MboII	GAAGA	4 cut(s)	315, 439, 625, 866
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	6 cut(s)	355, 438, 559, 928, 965, 1041
MlyI	GAGTC	2 cut(s)	31, 412
MmeI	TCCRAC	1 cut(s)	786
MseI	TTAA	3 cut(s)	360, 591, 816
MslI	CAYNNNNRTG	1 cut(s)	498
MspCI	CTTAAG	1 cut(s)	590
MspR9I	CCNGG	4 cut(s)	123, 696, 715, 831
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	4 cut(s)	123, 696, 715, 831
MvnI	CGCG	2 cut(s)	1108, 1110
MwoI	GCNNNNNNNGC	8 cut(s)	146, 194, 203, 758, 826, 947, 956, 1105
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	583, 733
NlaIV	GGNNCC	3 cut(s)	57, 554, 974
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	3 cut(s)	175, 607, 662
NspI	RCATGY	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	43
PagI	TCATGA	2 cut(s)	406, 1027
PfeI	GAWTC	4 cut(s)	263, 430, 472, 1024
PflMI	CCANNNNNTGG	1 cut(s)	968
PfoI	TCCNGGA	1 cut(s)	713
PkrI	GCNGC	3 cut(s)	196, 862, 916
PleI	GAGTC	2 cut(s)	30, 411
PpsI	GAGTC	2 cut(s)	30, 411
PshAI	GACNNNNGTC	2 cut(s)	293, 402
Psp6I	CCWGG	4 cut(s)	121, 694, 713, 829
PspGI	CCWGG	4 cut(s)	121, 694, 713, 829
PspN4I	GGNNCC	3 cut(s)	57, 554, 974
PspPI	GGNCC	3 cut(s)	284, 833, 973
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	733
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	360, 591, 816
SatI	GCNGC	3 cut(s)	195, 861, 915
Sau3AI	GATC	2 cut(s)	583, 733
Sau96I	GGNCC	3 cut(s)	284, 833, 973
SchI	GAGTC	2 cut(s)	31, 412
ScrFI	CCNGG	4 cut(s)	123, 696, 715, 831
SfaNI	GCATC	5 cut(s)	158, 320, 498, 778, 871
SfcI	CTRYAG	2 cut(s)	45, 753
SinI	GGWCC	1 cut(s)	973
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	6 cut(s)	355, 438, 559, 928, 965, 1041
SsiI	CCGC	3 cut(s)	1070, 1106, 1110
SspMI	CTAG	2 cut(s)	1053, 1067
StyD4I	CCNGG	4 cut(s)	121, 694, 713, 829
StyI	CCWWGG	4 cut(s)	28, 452, 567, 792
TaaI	ACNGT	3 cut(s)	69, 181, 365
TaqI	TCGA	4 cut(s)	246, 477, 669, 1010
TasI	AATT	6 cut(s)	355, 438, 559, 928, 965, 1041
TfiI	GAWTC	4 cut(s)	263, 430, 472, 1024
Tru1I	TTAA	3 cut(s)	360, 591, 816
Tru9I	TTAA	3 cut(s)	360, 591, 816
TscAI	CASTG	5 cut(s)	74, 123, 196, 206, 1091
TseFI	GTSAC	3 cut(s)	175, 607, 662
TseI	GCWGC	3 cut(s)	194, 860, 914
Tsp45I	GTSAC	3 cut(s)	175, 607, 662
TspDTI	ATGAA	4 cut(s)	741, 759, 812, 1044
TspGWI	ACGGA	2 cut(s)	439, 757
TspRI	CASTG	5 cut(s)	74, 123, 196, 206, 1091
Van91I	CCANNNNNTGG	1 cut(s)	968
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	973
XapI	RAATTY	2 cut(s)	355, 928
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	2 cut(s)	1053, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.