Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

6099354 .. 6102006

Gene Structure 2653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTTTGGGTATTAAGAAGCTCGGAGCGGGGATTAGATTCCCTTAACTATATCCTGTGGAAGATGAAGGAGTTTACAAAATTTGTCATTTTTGTGAAAAAGACTAACAAACTGAAGATTTCATTAGGCGTTGATGATGATTGTTATCCAGACTGGAATCATGACCACCTTGTGGCATGGAAGATTCTAGCAATTGAGAAGCTTCCAAGGTTTCCACATACCATGATTCTCGAAGGTGGAAGCATCCATGTAGATGGAGAAGGGACTTGCCTCACTACTGAGGAGTGCCTGCTAAATAAAAACAGGAACCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

106

Amino Acids

12.23

Weight (kDa)

6.89

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	47 - 103	9.8e-18	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccBSI	CCGCTC	1 cut(s)	28
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	172
AluBI	AGCT	2 cut(s)	21, 202
AluI	AGCT	2 cut(s)	21, 202
ApoI	RAATTY	1 cut(s)	80
BccI	CCATC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	308
BmsI	GCATC	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	290
CciI	TCATGA	1 cut(s)	160
CviAII	CATG	4 cut(s)	161, 177, 223, 248
CviJI	RGCY	2 cut(s)	21, 202
CviKI_1	RGCY	2 cut(s)	21, 202
DdeI	CTNAG	1 cut(s)	279
DraIII	CACNNNGTG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	164, 180, 226, 251
FaiI	YATR	6 cut(s)	51, 162, 178, 219, 224, 249
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	4 cut(s)	160, 176, 222, 247
FauI	CCCGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	230
FspBI	CTAG	1 cut(s)	188
Hin1II	CATG	4 cut(s)	164, 180, 226, 251
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	38, 157, 184, 226
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	149, 161, 230
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	61, 227, 254
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	164, 180, 226, 251
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	5 cut(s)	68, 139, 162, 289, 302
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	188
MbiI	CCGCTC	1 cut(s)	28
MboII	GAAGA	3 cut(s)	73, 127, 193
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	3 cut(s)	80, 192, 312
MnlI	CCTC	2 cut(s)	274, 281
MseI	TTAA	2 cut(s)	14, 45
MslI	CAYNNNNRTG	2 cut(s)	92, 252
MunI	CAATTG	1 cut(s)	192
NlaIII	CATG	4 cut(s)	164, 180, 226, 251
NlaIV	GGNNCC	1 cut(s)	308
PagI	TCATGA	1 cut(s)	160
PfeI	GAWTC	4 cut(s)	38, 157, 184, 226
PflMI	CCANNNNNTGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	308
RseI	CAYNNNNRTG	2 cut(s)	92, 252
SaqAI	TTAA	2 cut(s)	14, 45
SetI	ASST	6 cut(s)	23, 171, 204, 212, 238, 312
SfaNI	GCATC	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	92, 252
Sse9I	AATT	3 cut(s)	80, 192, 312
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	80, 192, 312
TfiI	GAWTC	4 cut(s)	38, 157, 184, 226
Tru1I	TTAA	2 cut(s)	14, 45
Tru9I	TTAA	2 cut(s)	14, 45
TspDTI	ATGAA	2 cut(s)	80, 111
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	80
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.