MD14G1218000.v1.1

agmatine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
30132310 .. 30136425
4116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1218000.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGAAGATGGAAGGCACGCCGGCTGTCCATGGATATTACATGCCTGCAGAGTGGGAACCCCATTCCCAGTGCTGGATTGGATGGCCTGAACGCCCGGATAACTGGAGAGACAATGCAGTGCCAGCTCAGCAGGTGTTTACCAAGGTAGCATCTGCAATCTCAAAGTTTGAGCCCGTGACTGTATGCGCAAGTGCCAATCAGTGGGCAAATGCACGAAGCCAGCTACCAGAAAATGTCAGGGTTATCGAGATGAGTTTGAATGATTCGTGGTTTCGTGATACAGGACCAACATTTGTCGTAGGAAAAAGTGCCTCTTGTTCTGGTACCCCTGAGCCAAAGGTTGCTGGTATTGATTGGAATTTCAACAGCTGGGGAGGCATTGATGATGGTTGTTATCGAGATTGGAGTCATGATCTTCTTGTGGCAGAAAAGATCCTGGCAATTGAGAAGCTTCCAAGGTTTCAACACTCCATGATTCTTGAAGGTGGAAGCATCCATGTCGATGGAGAAGGGACTTGCCTCACCACCGAGGAGTGCCTGTTAAATAAAAATAGGAACCCACATTTGACCAAGGAGCAAATAGAGGATCAACTTAAGGCGTATCTCGGAGTGATGAAAATCATTTGGTTGCCTCGTGGATTATATGGAGACGATGATACTAATGGTCACATCGACAATATGTGCTGTTTTGTAAAGCCTGGTGTGGTTTTGTTGTCATGGACGGATGATGAAACAGATCCTCAGTATGAAAGAGCTGTAGAAGCCGTTTCTGTTCTCTCCAATACTACTGATGCCAAGGGTAGGAAATTAGAAATAATAAAACTTCACGTACCAGGGCCGCTATACATGACAGAGAAAGAGGCTGCTGGGCTCTTTCAGGAGGAGTGTGAAGCTAAACCGAGACTTGCAGGCACCAGACTTGCTGCTTCATATGTAAATTTCTACATTGCAAATGGAGCCATCATTGCACCCCAATTTGGGGACCAGAAATGGGATGATGAGGCTGTTCGCGTCCTATCCAAAGCCTTTCCAAACCATGAAGTGGTAAGAATTGAAGGTGCAAGGGAGATTGTCCTCGCGGGTGGAAATATACACTGCATTACTCAACAACAACCACGCGTTTCACTCAGTATAGTCAACAATGATTGCTTTCATGCATAG

Protein Analysis

387

Amino Acids

43.06

Weight (kDa)

5.16

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAD_porph PF04371 14 - 372 8.9e-131 Porphyromonas-type peptidyl-arginine deiminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 121
Acc16I TGCGCA 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 121
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 911
AccB7I CCANNNNNTGG 2 cut(s) 201, 1042
AccII CGCG 3 cut(s) 1011, 1079, 1119
AciI CCGC 2 cut(s) 839, 1079
AclWI GGATC 3 cut(s) 427, 594, 731
AcsI RAATTY 2 cut(s) 358, 937
AfaI GTAC 2 cut(s) 325, 831
AfiI CCNNNNNNNGG 8 cut(s) 72, 201, 801, 977, 978, 979, 991, 1042
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 1117
AgsI TTSAA 5 cut(s) 259, 364, 464, 482, 1055
AjnI CCWGG 3 cut(s) 435, 697, 832
AluBI AGCT 6 cut(s) 125, 223, 369, 451, 755, 893
AluI AGCT 6 cut(s) 125, 223, 369, 451, 755, 893
Alw26I GTCTC 3 cut(s) 102, 642, 895
AlwI GGATC 3 cut(s) 427, 594, 731
AoxI GGCC 2 cut(s) 83, 836
ApeKI GCWGC 2 cut(s) 863, 923
ApoI RAATTY 2 cut(s) 358, 937
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 284, 836, 982
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 2 cut(s) 284, 982
BanI GGYRCC 2 cut(s) 323, 911
BanII GRGCYC 2 cut(s) 174, 873
BauI CACGAG 1 cut(s) 633
BbvI GCAGC 2 cut(s) 850, 910
BccI CCATC 4 cut(s) 75, 380, 497, 968
BceAI ACGGC 1 cut(s) 749
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 3 cut(s) 437, 699, 834
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 3 cut(s) 102, 642, 895
BfmI CTRYAG 2 cut(s) 45, 756
BfrI CTTAAG 1 cut(s) 593
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 839, 864, 924
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 3 cut(s) 840, 865, 925
Bme1390I CCNGG 4 cut(s) 95, 437, 699, 834
Bme18I GGWCC 2 cut(s) 284, 982
BmgT120I GGNCC 3 cut(s) 284, 836, 982
BmiI GGNNCC 6 cut(s) 57, 325, 557, 913, 958, 983
BmrFI CCNGG 4 cut(s) 95, 437, 699, 834
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 158, 501, 781
BmuI ACTGGG 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 617
BsaJI CCNNGG 7 cut(s) 28, 141, 455, 528, 570, 795, 833
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 8 cut(s) 72, 201, 801, 977, 978, 979, 991, 1042
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 67, 107
Bse3DI GCAATG 2 cut(s) 945, 963
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 3 cut(s) 437, 699, 834
BseDI CCNNGG 7 cut(s) 28, 141, 455, 528, 570, 795, 833
BseGI GGATG 4 cut(s) 86, 492, 730, 1000
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 8 cut(s) 72, 201, 801, 977, 978, 979, 991, 1042
BseMI GCAATG 2 cut(s) 945, 963
BseMII CTCAG 4 cut(s) 140, 321, 755, 1141
BseNI ACTGG 2 cut(s) 67, 107
BseRI GAGGAG 2 cut(s) 545, 896
BseXI GCAGC 2 cut(s) 850, 910
BseYI CCCAGC 2 cut(s) 369, 866
Bsh1236I CGCG 3 cut(s) 1011, 1079, 1119
BshFI GGCC 2 cut(s) 85, 838
BshNI GGYRCC 2 cut(s) 323, 911
BsiSI CCGG 2 cut(s) 20, 95
BslFI GGGAC 2 cut(s) 526, 995
BslI CCNNNNNNNGG 8 cut(s) 72, 201, 801, 977, 978, 979, 991, 1042
BsmAI GTCTC 3 cut(s) 102, 642, 895
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 2 cut(s) 526, 995
BsnI GGCC 2 cut(s) 85, 838
Bsp1286I GDGCHC 2 cut(s) 174, 873
Bsp143I GATC 4 cut(s) 412, 432, 586, 736
Bsp1720I GCTNAGC 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 2 cut(s) 839, 1079
BspANI GGCC 2 cut(s) 85, 838
BspCNI CTCAG 4 cut(s) 139, 322, 754, 1140
BspFNI CGCG 3 cut(s) 1011, 1079, 1119
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 6 cut(s) 57, 325, 557, 913, 958, 983
BspMAI CTGCAG 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 3 cut(s) 427, 594, 731
BspT107I GGYRCC 2 cut(s) 323, 911
BspTI CTTAAG 1 cut(s) 593
BsrDI GCAATG 2 cut(s) 945, 963
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 67, 107
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 7 cut(s) 28, 141, 455, 528, 570, 795, 833
BssMI GATC 4 cut(s) 412, 432, 586, 736
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 5 cut(s) 28, 141, 455, 570, 795
Bst2BI CACGAG 1 cut(s) 633
Bst2UI CCWGG 3 cut(s) 437, 699, 834
Bst4CI ACNGT 1 cut(s) 181
BstAFI CTTAAG 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 829
BstC8I GCNNGC 6 cut(s) 17, 21, 45, 123, 221, 910
BstDEI CTNAG 4 cut(s) 126, 330, 741, 1127
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 4 cut(s) 86, 492, 730, 1000
BstFNI CGCG 3 cut(s) 1011, 1079, 1119
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 415, 435, 589, 739
BstMAI GTCTC 3 cut(s) 102, 642, 895
BstMBI GATC 4 cut(s) 412, 432, 586, 736
BstMWI GCNNNNNNNGC 6 cut(s) 122, 127, 375, 761, 956, 965
BstNI CCWGG 3 cut(s) 437, 699, 834
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 4 cut(s) 93, 435, 697, 832
BstSFI CTRYAG 2 cut(s) 45, 756
BstUI CGCG 3 cut(s) 1011, 1079, 1119
BstV1I GCAGC 2 cut(s) 850, 910
BstX2I RGATCY 2 cut(s) 432, 736
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 2 cut(s) 432, 736
BsuRI GGCC 2 cut(s) 85, 838
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 4 cut(s) 86, 492, 730, 1000
BtsI GCAGTG 2 cut(s) 123, 1093
BtsIMutI CAGTG 4 cut(s) 74, 123, 206, 1093
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 6 cut(s) 17, 21, 45, 123, 221, 910
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 284, 836, 982
CseI GACGC 1 cut(s) 1000
Csp6I GTAC 2 cut(s) 324, 830
CviAII CATG 9 cut(s) 29, 40, 410, 472, 497, 717, 847, 1037, 1154
CviQI GTAC 2 cut(s) 324, 830
DdeI CTNAG 4 cut(s) 126, 330, 741, 1127
DpnI GATC 4 cut(s) 414, 434, 588, 738
DpnII GATC 4 cut(s) 412, 432, 586, 736
Eco130I CCWWGG 5 cut(s) 28, 141, 455, 570, 795
Eco24I GRGCYC 2 cut(s) 174, 873
Eco47I GGWCC 2 cut(s) 284, 982
EcoRII CCWGG 3 cut(s) 435, 697, 832
EcoT14I CCWWGG 5 cut(s) 28, 141, 455, 570, 795
EcoT22I ATGCAT 1 cut(s) 1159
EcoT38I GRGCYC 2 cut(s) 174, 873
ErhI CCWWGG 5 cut(s) 28, 141, 455, 570, 795
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 9 cut(s) 32, 43, 413, 475, 500, 720, 850, 1040, 1157
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 2 cut(s) 526, 995
FatI CATG 9 cut(s) 28, 39, 409, 471, 496, 716, 846, 1036, 1153
FauI CCCGC 1 cut(s) 1072
FauNDI CATATG 1 cut(s) 931
Fnu4HI GCNGC 3 cut(s) 839, 864, 924
FokI GGATG 4 cut(s) 93, 479, 737, 1007
FriOI GRGCYC 2 cut(s) 174, 873
Fsp4HI GCNGC 3 cut(s) 839, 864, 924
FspI TGCGCA 1 cut(s) 187
GlaI GCGC 1 cut(s) 187
GluI GCNGC 3 cut(s) 839, 864, 924
GsaI CCCAGC 2 cut(s) 373, 870
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 2 cut(s) 85, 838
HapII CCGG 2 cut(s) 20, 95
HgaI GACGC 1 cut(s) 1000
HhaI GCGC 1 cut(s) 188
Hin1II CATG 9 cut(s) 32, 43, 413, 475, 500, 720, 850, 1040, 1157
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 1138
HindII GTYRAC 1 cut(s) 1138
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 263, 406, 475
HpaII CCGG 2 cut(s) 20, 95
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 138, 1138
Hpy188I TCNGA 1 cut(s) 608
Hpy188III TCNNGA 6 cut(s) 247, 275, 398, 410, 479, 878
Hpy8I GTNNAC 2 cut(s) 138, 1138
HpyAV CCTTC 4 cut(s) 5, 476, 503, 1049
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 828
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 127, 375, 761, 956, 965
HpyF3I CTNAG 4 cut(s) 126, 330, 741, 1127
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 9 cut(s) 32, 43, 413, 475, 500, 720, 850, 1040, 1157
HspAI GCGC 1 cut(s) 186
KpnI GGTACC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 4 cut(s) 412, 432, 586, 736
LmnI GCTCC 2 cut(s) 574, 956
Lsp1109I GCAGC 2 cut(s) 850, 910
LweI GCATC 3 cut(s) 158, 501, 781
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 2 cut(s) 175, 665
MalI GATC 4 cut(s) 414, 434, 588, 738
MboI GATC 4 cut(s) 412, 432, 586, 736
MboII GAAGA 2 cut(s) 16, 407
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 432, 736
MhlI GDGCHC 2 cut(s) 174, 873
MluCI AATT 6 cut(s) 358, 441, 806, 937, 974, 1050
MluI ACGCGT 1 cut(s) 1117
MlyI GAGTC 1 cut(s) 415
Mph1103I ATGCAT 1 cut(s) 1159
MroNI GCCGGC 1 cut(s) 19
MseI TTAA 2 cut(s) 542, 594
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 369
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 2 cut(s) 20, 95
MspR9I CCNGG 4 cut(s) 95, 437, 699, 834
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 3 cut(s) 437, 699, 834
MvnI CGCG 3 cut(s) 1011, 1079, 1119
MwoI GCNNNNNNNGC 6 cut(s) 122, 127, 375, 761, 956, 965
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 931
NdeII GATC 4 cut(s) 412, 432, 586, 736
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 9 cut(s) 32, 43, 413, 475, 500, 720, 850, 1040, 1157
NlaIV GGNNCC 6 cut(s) 57, 325, 557, 913, 958, 983
NmuCI GTSAC 2 cut(s) 175, 665
NsbI TGCGCA 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 1159
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 121
PdiI GCCGGC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 263, 475
PflMI CCANNNNNTGG 2 cut(s) 201, 1042
PkrI GCNGC 3 cut(s) 840, 865, 925
PleI GAGTC 1 cut(s) 414
PpsI GAGTC 1 cut(s) 414
Ppu21I YACGTR 1 cut(s) 829
Psp6I CCWGG 3 cut(s) 435, 697, 832
PspFI CCCAGC 2 cut(s) 369, 866
PspGI CCWGG 3 cut(s) 435, 697, 832
PspN4I GGNNCC 6 cut(s) 57, 325, 557, 913, 958, 983
PspPI GGNCC 3 cut(s) 284, 836, 982
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 2 cut(s) 432, 736
PvuII CAGCTG 1 cut(s) 369
RsaI GTAC 2 cut(s) 325, 831
RsaNI GTAC 2 cut(s) 324, 830
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 2 cut(s) 542, 594
SatI GCNGC 3 cut(s) 839, 864, 924
Sau3AI GATC 4 cut(s) 412, 432, 586, 736
Sau96I GGNCC 3 cut(s) 284, 836, 982
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 4 cut(s) 95, 437, 699, 834
SduI GDGCHC 2 cut(s) 174, 873
SfaNI GCATC 3 cut(s) 158, 501, 781
SfcI CTRYAG 2 cut(s) 45, 756
SinI GGWCC 2 cut(s) 284, 982
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 6 cut(s) 358, 441, 806, 937, 974, 1050
SsiI CCGC 2 cut(s) 839, 1079
StyD4I CCNGG 4 cut(s) 93, 435, 697, 832
StyI CCWWGG 5 cut(s) 28, 141, 455, 570, 795
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 831
TaqI TCGA 4 cut(s) 246, 397, 501, 672
TasI AATT 6 cut(s) 358, 441, 806, 937, 974, 1050
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 2 cut(s) 263, 475
Tru1I TTAA 2 cut(s) 542, 594
Tru9I TTAA 2 cut(s) 542, 594
TscAI CASTG 4 cut(s) 74, 123, 206, 1100
TseFI GTSAC 2 cut(s) 175, 665
TseI GCWGC 2 cut(s) 863, 923
Tsp45I GTSAC 2 cut(s) 175, 665
TspDTI ATGAA 7 cut(s) 17, 629, 744, 762, 918, 1053, 1142
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 4 cut(s) 74, 123, 206, 1100
Van91I CCANNNNNTGG 2 cut(s) 201, 1042
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 284, 982
XapI RAATTY 2 cut(s) 358, 937
XceI RCATGY 1 cut(s) 43
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.