Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025350.1

Orthogroup ID

OG0003393

Physical Location & Seq

Genomic Coordinates Forward (+)

34440 .. 37349

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025350.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggaaggcacgccgagtctccatggatactacatgcctgcagagtgggagccccattcacagtgctggattggatggccagagcgcccagataactggagaaacaatgcagtgcctggtcagttggtgtttgcaagggtagcatctgcaatctcaaagtttgagcctgtcaccgtgtgtgccagtggtgctcagtgggcaaatgcacgaagtcagctaccagaaaatgtcagggttgtcgagatgagtttgaatgattcttggtttcgtgatacaggcccgacgattgtcataggaagaagtgcatcatgttctcagccagagccaaaggttgctggcattgattggaattttaacagttggggaggtgttgatgatggttgttatccagactggagtcatgacctccttgtggcacggaagattctggcaattgagaagcttccaaggtttccacataccatgattctcgaaggtggaagcatccatgtagatggagaagggacttgcctcaccactgaggagtgcctcctaaataaaaacaggaaccctaatttgaccaaggagcaaatagaggatcaacttaaggcatatcttggagtgacgaagattatttggttgcctcgtggattatatggagatgatgatactaatggtcacattgacaatatgtgctgttttgtgaagcctggtgtggttttgttgtcctggactgatgatgaaacagatcctcagtatgaacgagctgtagaagccctttccgtcctcagcaatactactgatgccaagggtagaaagttggaagtgattaagcttcatgtgccaggcccactatacatgacagaggaagaggctgctggagtttctcaggacgatgctaaaccgagacttgcaggcacaagacttgcagcttcttatgtgaatttctacattgccaatggagcaatcattgcaccacaatttggggacaagaaatgggacgatgaggctgttcgtgtcctatcgaaagcctttccgaaccatgaagtggtgagaattgaaggtgctagggagattgttctagcgggtggaaacatacactgcataactcagcaacaaccacgcgggcactcgcaagcagagatggaaagtctccaatttatgcaggcattgttgcaacagagaccagagatattgcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

393

Amino Acids

43.77

Weight (kDa)

5.17

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08170 AT5G08170 AT5G08170 AT5G08170
fragaria_vesca	FvH4_5g13050 FvH4_5g13050
malus_domestica	MD06G1207500.v1.1 MD14G1218000.v1.1
prunus_persica	Prupe.5G211900_v2.0.a1 Prupe.5G211900_v2.0.a1
pyrus_communis	pycom06g18540 pycom14g18080
rosa_chinensis	RchiOBHm_Chr2g0129061 RchiOBHm_Chr4g0407271 RchiOBHm_Chr7g0184081
rosa_laevigata	RLG00000005002 RLG00000008136 RLG00000011017
rosa_multiflora	Rmu_sc0001017.1_g000016 Rmu_sc0001533.1_g000013 Rmu_sc0005026.1_g000004 Rmu_sc0018187.1_g000001 Rmu_sc0025350.1_g000012
rosa_roxburghii	Rroxscaffold_3G00223390 Rroxscaffold_3G00269900 Rroxscaffold_6G00397710
rosa_rugosa	Rorug06G0462700 Rorug06G0462700
rosa_samantha	Rh1CG056900 Rh2CG313200 Rh4BG338400 Rh7AG083000 Rh7BG064000 Rh7CG064700 Rh7DG064200
rosa_wichuraiana	Rw7G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	962, 1027
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	2 cut(s)	1064, 1104
AclWI	GGATC	2 cut(s)	585, 722
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	349, 922
AdeI	CACNNNGTG	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	412, 962, 1027
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	2 cut(s)	253, 1040
AjnI	CCWGG	4 cut(s)	115, 688, 707, 823
AluBI	AGCT	5 cut(s)	217, 442, 746, 814, 911
AluI	AGCT	5 cut(s)	217, 442, 746, 814, 911
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	4 cut(s)	23, 880, 1136, 1156
AlwI	GGATC	2 cut(s)	585, 722
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	77, 277, 826
ApeKI	GCWGC	2 cut(s)	854, 908
ApoI	RAATTY	2 cut(s)	349, 922
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	278, 827
AsuHPI	GGTGA	3 cut(s)	163, 505, 1042
BaeGI	GKGCMC	1 cut(s)	1110
BalI	TGGCCA	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	193
BbvCI	CCTCAGC	1 cut(s)	767
BbvI	GCAGC	2 cut(s)	841, 920
BccI	CCATC	4 cut(s)	69, 371, 488, 1117
BciT130I	CCWGG	4 cut(s)	117, 690, 709, 825
BciVI	GTATCC	1 cut(s)	20
BcoDI	GTCTC	4 cut(s)	23, 880, 1136, 1156
BfaI	CTAG	2 cut(s)	1047, 1061
BfmI	CTRYAG	2 cut(s)	39, 747
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	855, 909
BlsI	GCNGC	2 cut(s)	856, 910
Bme1390I	CCNGG	4 cut(s)	117, 690, 709, 825
BmgT120I	GGNCC	2 cut(s)	278, 827
BmiI	GGNNCC	2 cut(s)	51, 548
BmrFI	CCNGG	4 cut(s)	117, 690, 709, 825
BmsI	GCATC	5 cut(s)	152, 314, 492, 772, 865
BoxI	GACNNNNGTC	2 cut(s)	287, 396
BpmI	CTGGAG	3 cut(s)	118, 415, 879
Bpu10I	CCTNAGC	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	1156
BsaJI	CCNNGG	4 cut(s)	22, 446, 561, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 962, 1027
Bse1I	ACTGG	3 cut(s)	101, 183, 398
Bse3DI	GCAATG	2 cut(s)	930, 948
BseBI	CCWGG	4 cut(s)	117, 690, 709, 825
BseDI	CCNNGG	4 cut(s)	22, 446, 561, 786
BseGI	GGATG	2 cut(s)	80, 483
BseLI	CCNNNNNNNGG	3 cut(s)	412, 962, 1027
BseMI	GCAATG	2 cut(s)	930, 948
BseMII	CTCAG	7 cut(s)	206, 329, 510, 746, 781, 881, 1103
BseNI	ACTGG	3 cut(s)	101, 183, 398
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	1110
BseXI	GCAGC	2 cut(s)	841, 920
Bsh1236I	CGCG	1 cut(s)	1104
BshFI	GGCC	3 cut(s)	79, 279, 828
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	3 cut(s)	517, 980, 992
BslI	CCNNNNNNNGG	3 cut(s)	412, 962, 1027
BsmAI	GTCTC	4 cut(s)	23, 880, 1136, 1156
BsmFI	GGGAC	3 cut(s)	517, 980, 992
BsnI	GGCC	3 cut(s)	79, 279, 828
Bso31I	GGTCTC	1 cut(s)	1156
Bsp1286I	GDGCHC	3 cut(s)	54, 193, 1110
Bsp143I	GATC	2 cut(s)	577, 727
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	1064, 1104
BspANI	GGCC	3 cut(s)	79, 279, 828
BspCNI	CTCAG	7 cut(s)	205, 328, 511, 745, 780, 880, 1102
BspFNI	CGCG	1 cut(s)	1104
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	51, 548
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	585, 722
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	1156
BsrDI	GCAATG	2 cut(s)	930, 948
BsrI	ACTGG	3 cut(s)	101, 183, 398
BssECI	CCNNGG	4 cut(s)	22, 446, 561, 786
BssMI	GATC	2 cut(s)	577, 727
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	4 cut(s)	22, 446, 561, 786
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	4 cut(s)	117, 690, 709, 825
Bst4CI	ACNGT	3 cut(s)	63, 175, 359
Bst6I	CTCTTC	1 cut(s)	843
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	7 cut(s)	11, 39, 337, 895, 1106, 1116, 1146
BstDEI	CTNAG	7 cut(s)	192, 315, 519, 732, 767, 867, 1089
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	80, 483
BstFNI	CGCG	1 cut(s)	1104
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	580, 730
BstMAI	GTCTC	4 cut(s)	23, 880, 1136, 1156
BstMBI	GATC	2 cut(s)	577, 727
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 188, 197, 752, 820, 941, 950
BstNI	CCWGG	4 cut(s)	117, 690, 709, 825
BstNSI	RCATGY	1 cut(s)	37
BstPAI	GACNNNNGTC	2 cut(s)	287, 396
BstSCI	CCNGG	4 cut(s)	115, 688, 707, 823
BstSFI	CTRYAG	2 cut(s)	39, 747
BstSLI	GKGCMC	1 cut(s)	1110
BstUI	CGCG	1 cut(s)	1104
BstV1I	GCAGC	2 cut(s)	841, 920
BstX2I	RGATCY	1 cut(s)	727
BstXI	CCANNNNNNTGG	2 cut(s)	96, 494
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	79, 279, 828
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	80, 483
BtsI	GCAGTG	2 cut(s)	117, 1078
BtsIMutI	CAGTG	6 cut(s)	68, 117, 190, 200, 516, 1078
Cac8I	GCNNGC	7 cut(s)	11, 39, 337, 895, 1106, 1116, 1146
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	278, 827
CviAII	CATG	9 cut(s)	23, 34, 309, 401, 463, 488, 818, 838, 1022
DdeI	CTNAG	7 cut(s)	192, 315, 519, 732, 767, 867, 1089
DpnI	GATC	2 cut(s)	579, 729
DpnII	GATC	2 cut(s)	577, 727
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco130I	CCWWGG	4 cut(s)	22, 446, 561, 786
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	1156
EcoRII	CCWGG	4 cut(s)	115, 688, 707, 823
EcoT14I	CCWWGG	4 cut(s)	22, 446, 561, 786
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	4 cut(s)	22, 446, 561, 786
FaeI	CATG	9 cut(s)	26, 37, 312, 404, 466, 491, 821, 841, 1025
FaqI	GGGAC	3 cut(s)	517, 980, 992
FatI	CATG	9 cut(s)	22, 33, 308, 400, 462, 487, 817, 837, 1021
FauI	CCCGC	2 cut(s)	1057, 1097
Fnu4HI	GCNGC	2 cut(s)	855, 909
FokI	GGATG	2 cut(s)	87, 470
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	855, 909
FspBI	CTAG	2 cut(s)	1047, 1061
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	855, 909
GsuI	CTGGAG	3 cut(s)	118, 415, 879
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	79, 279, 828
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	9 cut(s)	26, 37, 312, 404, 466, 491, 821, 841, 1025
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HindIII	AAGCTT	2 cut(s)	440, 812
HinfI	GANTC	5 cut(s)	16, 257, 397, 424, 466
HphI	GGTGA	3 cut(s)	163, 505, 1042
Hpy188I	TCNGA	1 cut(s)	1017
Hpy188III	TCNNGA	6 cut(s)	241, 269, 389, 401, 470, 869
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	3 cut(s)	467, 494, 1034
HpyCH4III	ACNGT	3 cut(s)	63, 175, 359
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 188, 197, 752, 820, 941, 950
HpyF3I	CTNAG	7 cut(s)	192, 315, 519, 732, 767, 867, 1089
Hsp92II	CATG	9 cut(s)	26, 37, 312, 404, 466, 491, 821, 841, 1025
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	577, 727
LmnI	GCTCC	3 cut(s)	49, 565, 941
Lsp1109I	GCAGC	2 cut(s)	841, 920
LweI	GCATC	5 cut(s)	152, 314, 492, 772, 865
MaeI	CTAG	2 cut(s)	1047, 1061
MaeIII	GTNAC	3 cut(s)	169, 601, 656
MalI	GATC	2 cut(s)	579, 729
MboI	GATC	2 cut(s)	577, 727
MboII	GAAGA	4 cut(s)	309, 433, 619, 860
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	3 cut(s)	54, 193, 1110
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	7 cut(s)	349, 432, 553, 922, 959, 1035, 1136
MluNI	TGGCCA	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	25, 406
MmeI	TCCRAC	1 cut(s)	780
Mox20I	TGGCCA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	79
MseI	TTAA	3 cut(s)	354, 585, 810
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	79
MspCI	CTTAAG	1 cut(s)	584
MspR9I	CCNGG	4 cut(s)	117, 690, 709, 825
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	4 cut(s)	117, 690, 709, 825
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	7 cut(s)	140, 188, 197, 752, 820, 941, 950
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	577, 727
NlaIII	CATG	9 cut(s)	26, 37, 312, 404, 466, 491, 821, 841, 1025
NlaIV	GGNNCC	2 cut(s)	51, 548
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	169, 601, 656
NspI	RCATGY	1 cut(s)	37
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	257, 424, 466
PflMI	CCANNNNNTGG	2 cut(s)	962, 1027
PfoI	TCCNGGA	1 cut(s)	707
PkrI	GCNGC	2 cut(s)	856, 910
PleI	GAGTC	2 cut(s)	24, 405
PpsI	GAGTC	2 cut(s)	24, 405
PshAI	GACNNNNGTC	2 cut(s)	287, 396
Psp6I	CCWGG	4 cut(s)	115, 688, 707, 823
PspGI	CCWGG	4 cut(s)	115, 688, 707, 823
PspN4I	GGNNCC	2 cut(s)	51, 548
PspPI	GGNCC	2 cut(s)	278, 827
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	727
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	354, 585, 810
SatI	GCNGC	2 cut(s)	855, 909
Sau3AI	GATC	2 cut(s)	577, 727
Sau96I	GGNCC	2 cut(s)	278, 827
SchI	GAGTC	2 cut(s)	25, 406
ScrFI	CCNGG	4 cut(s)	117, 690, 709, 825
SduI	GDGCHC	3 cut(s)	54, 193, 1110
SfaNI	GCATC	5 cut(s)	152, 314, 492, 772, 865
SfcI	CTRYAG	2 cut(s)	39, 747
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	7 cut(s)	349, 432, 553, 922, 959, 1035, 1136
SsiI	CCGC	2 cut(s)	1064, 1104
SspMI	CTAG	2 cut(s)	1047, 1061
StyD4I	CCNGG	4 cut(s)	115, 688, 707, 823
StyI	CCWWGG	4 cut(s)	22, 446, 561, 786
TaaI	ACNGT	3 cut(s)	63, 175, 359
TaqI	TCGA	3 cut(s)	240, 471, 1004
TasI	AATT	7 cut(s)	349, 432, 553, 922, 959, 1035, 1136
TfiI	GAWTC	3 cut(s)	257, 424, 466
Tru1I	TTAA	3 cut(s)	354, 585, 810
Tru9I	TTAA	3 cut(s)	354, 585, 810
TscAI	CASTG	6 cut(s)	68, 117, 190, 200, 523, 1085
TseFI	GTSAC	3 cut(s)	169, 601, 656
TseI	GCWGC	2 cut(s)	854, 908
Tsp45I	GTSAC	3 cut(s)	169, 601, 656
TspDTI	ATGAA	4 cut(s)	735, 753, 806, 1038
TspGWI	ACGGA	2 cut(s)	433, 751
TspRI	CASTG	6 cut(s)	68, 117, 190, 200, 523, 1085
Van91I	CCANNNNNTGG	2 cut(s)	962, 1027
Vha464I	CTTAAG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	349, 922
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	2 cut(s)	1047, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.