FvH4_5g13430

Sulfotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006990
Physical Location & Seq
Forward (+)
7583445 .. 7584420
976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13430.t1

Sequence Viewer

Length: 771 bp
ATGACTAGTCTCCTTGGAGATTACGATGAAGTTATGTCAACCCTTCCTAAAGTGAAAGCCTGGGAAGGTGGTGATTTCGATTTCTACCACTACCAAGGCTTTTGGCATATCAATTTGTTTCTTAAAGGTATGATCTGGGCACAGCAAAGTTTCAGGGCCAGAGATACTGACATTTTCTTAGTCACCTCTCCAAAAAGTGGTACAACATGGGGCAAGGCTCATTTTCAAGTTTACAATGATAACCCGATCGCCTACCTTGAATCTCTTCCCTCACCTAGAGTGCTAGCAACCCACAGTTCTTATGCATCATTACCAGACTCCATTTTGAAAACTTCAGAAGAGGCATTTGAGTCGTTTTGTAAGGGGGAATCGACTTATGGACCTTTTTGGGATCATGTTCTGGGTTATTGGGAACCAAGCAAGGAAAACCCTGATACGGTCTTATTTCTGAAGTATGAAGGTTTGAACGAGGACACAGAGGGATGTGTAAAGAGGTTGGCAGAGTTCATGCATCTTCCATTTTCGATAGAAGAAGAGAGACAAGGTGTTGTTCAAAAAGTAGTAAACTTGTGCAGTTTCGAAAATTTGAGCAATTTGGAGGTGAACAAAAGTGGGACTTTTGGTCTAACTAATCATCCGCAGGTCGACAACAACCTTTTCTTCAGGAAAGGTAAGGTTGGGGACTCCAGCAACTACCTAACACCTGAGATGCTCCAGCATCTTGACAATATCACAGAGCACAAGTTGGGTAGTGCTGGTTTGAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

257

Amino Acids

29.15

Weight (kDa)

5.17

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 111 - 250 1.5e-33 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccB7I CCANNNNNTGG 1 cut(s) 197
AccI GTMKAC 1 cut(s) 645
AciI CCGC 1 cut(s) 638
AclWI GGATC 1 cut(s) 399
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 3 cut(s) 318, 470, 646
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 197, 436
AgsI TTSAA 6 cut(s) 227, 260, 328, 466, 554, 763
AhdI GACNNNNNGTC 1 cut(s) 621
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 59
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 14, 532
AlwI GGATC 1 cut(s) 399
AoxI GGCC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 583
Asp700I GAANNNNTTC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 156, 380
AsuHPI GGTGA 4 cut(s) 83, 175, 264, 613
AsuII TTCGAA 1 cut(s) 579
AsuNHI GCTAGC 1 cut(s) 283
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 14, 532
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 276, 284
BfuAI ACCTGC 1 cut(s) 631
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 380
BmeRI GACNNNNNGTC 1 cut(s) 621
BmgT120I GGNCC 2 cut(s) 156, 380
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 4 cut(s) 314, 520, 699, 727
BmtI GCTAGC 1 cut(s) 287
BpmI CTGGAG 2 cut(s) 670, 698
Bpu14I TTCGAA 1 cut(s) 579
BsaJI CCNNGG 3 cut(s) 13, 60, 94
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 436
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 3 cut(s) 13, 60, 94
BseGI GGATG 2 cut(s) 488, 634
BseLI CCNNNNNNNGG 2 cut(s) 197, 436
BseMII CTCAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 592
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 741
BslFI GGGAC 2 cut(s) 628, 695
BslI CCNNNNNNNGG 2 cut(s) 197, 436
BsmAI GTCTC 2 cut(s) 14, 532
BsmFI GGGAC 2 cut(s) 628, 695
BsnI GGCC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 142, 741
Bsp143I GATC 3 cut(s) 132, 246, 391
BspACI CCGC 1 cut(s) 638
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 697
BspLI GGNNCC 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 631
BspOI GCTAGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 579
BssECI CCNNGG 3 cut(s) 13, 60, 94
BssMI GATC 3 cut(s) 132, 246, 391
BssT1I CCWWGG 2 cut(s) 13, 94
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 296, 439
Bst6I CTCTTC 3 cut(s) 270, 333, 528
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 178, 705
BstF5I GGATG 2 cut(s) 488, 634
BstKTI GATC 3 cut(s) 135, 249, 394
BstMAI GTCTC 2 cut(s) 14, 532
BstMBI GATC 3 cut(s) 132, 246, 391
BstMCI CGRYCG 1 cut(s) 249
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 488, 634
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 156, 380
Csp6I GTAC 1 cut(s) 201
CviAII CATG 3 cut(s) 207, 395, 508
CviJI RGCY 4 cut(s) 59, 99, 158, 218
CviKI_1 RGCY 4 cut(s) 59, 99, 158, 218
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 178, 705
DpnI GATC 3 cut(s) 134, 248, 393
DpnII GATC 3 cut(s) 132, 246, 391
DriI GACNNNNNGTC 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 270, 333, 528
Eam1105I GACNNNNNGTC 1 cut(s) 621
EarI CTCTTC 3 cut(s) 270, 333, 528
Eco130I CCWWGG 2 cut(s) 13, 94
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 3 cut(s) 318, 470, 646
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 13, 94
EcoT22I ATGCAT 2 cut(s) 307, 513
ErhI CCWWGG 2 cut(s) 13, 94
FaeI CATG 3 cut(s) 210, 398, 511
FaiI YATR 9 cut(s) 35, 108, 131, 208, 303, 378, 396, 456, 509
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 2 cut(s) 628, 695
FatI CATG 3 cut(s) 206, 394, 507
FblI GTMKAC 1 cut(s) 645
FokI GGATG 2 cut(s) 495, 621
FspBI CTAG 3 cut(s) 6, 276, 284
GsuI CTGGAG 2 cut(s) 670, 698
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 3 cut(s) 210, 398, 511
HincII GTYRAC 2 cut(s) 39, 646
HindII GTYRAC 2 cut(s) 39, 646
HinfI GANTC 5 cut(s) 260, 317, 350, 368, 683
HphI GGTGA 4 cut(s) 83, 175, 264, 613
Hpy166II GTNNAC 5 cut(s) 39, 232, 565, 604, 646
Hpy188I TCNGA 2 cut(s) 337, 450
Hpy188III TCNNGA 2 cut(s) 664, 722
Hpy8I GTNNAC 5 cut(s) 39, 232, 565, 604, 646
HpyAV CCTTC 3 cut(s) 53, 59, 452
HpyCH4III ACNGT 2 cut(s) 296, 439
HpyCH4V TGCA 3 cut(s) 305, 511, 573
HpyF3I CTNAG 2 cut(s) 178, 705
Hsp92II CATG 3 cut(s) 210, 398, 511
Kzo9I GATC 3 cut(s) 132, 246, 391
LmnI GCTCC 1 cut(s) 717
LweI GCATC 4 cut(s) 314, 520, 699, 727
MaeI CTAG 3 cut(s) 6, 276, 284
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 134, 248, 393
MboI GATC 3 cut(s) 132, 246, 391
MboII GAAGA 6 cut(s) 257, 350, 506, 542, 545, 652
MhlI GDGCHC 2 cut(s) 142, 741
MluCI AATT 3 cut(s) 112, 583, 592
MlyI GAGTC 3 cut(s) 311, 359, 677
MnlI CCTC 7 cut(s) 196, 280, 334, 463, 472, 486, 592
Mph1103I ATGCAT 2 cut(s) 307, 513
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
NdeII GATC 3 cut(s) 132, 246, 391
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 3 cut(s) 210, 398, 511
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 2 cut(s) 307, 513
NspV TTCGAA 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 260, 368
PflMI CCANNNNNTGG 1 cut(s) 197
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 3 cut(s) 311, 358, 677
PpsI GAGTC 3 cut(s) 311, 358, 677
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 2 cut(s) 156, 380
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SalI GTCGAC 1 cut(s) 644
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 3 cut(s) 132, 246, 391
Sau96I GGNCC 2 cut(s) 156, 380
SchI GAGTC 3 cut(s) 311, 359, 677
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 142, 741
SfaNI GCATC 4 cut(s) 314, 520, 699, 727
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 3 cut(s) 112, 583, 592
SsiI CCGC 1 cut(s) 638
SspMI CTAG 3 cut(s) 6, 276, 284
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 2 cut(s) 13, 94
TaaI ACNGT 2 cut(s) 296, 439
TaqI TCGA 5 cut(s) 78, 371, 524, 579, 645
TasI AATT 3 cut(s) 112, 583, 592
TfiI GAWTC 2 cut(s) 260, 368
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 42, 471, 496
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 3 cut(s) 6, 276, 284
Zsp2I ATGCAT 2 cut(s) 307, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.