Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006990

Physical Location & Seq

Genomic Coordinates Forward (+)

64476321 .. 64477344

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTATCTGCGTCTGTACTGGATCAAGAAGAAGAAGAAGAAGATGAAAACAAGATTAGTGGCATTCAAGATTTCCACGAAATTATCTCAACCCTCCCTAAAGTGAGAGCCTGGGAAGGTGATCAGGATTACTACCAATACCAAGGGTTGTGTGGTACAACATGGCTTAAGGCTCTCATGTCTGCTATCCAAAATCGAAATTGCCAATCCCAATCCCATCATCCATTGCTCACAAATAATCCTCGTGATTGTGTACCCTTCCTAGAGTTGCAAGTTCACAAAGATAACCCAATCGCCTACTTAGAATCTCTTCCCTCACCTAGATTGCTCGCAACCCACATTTCATACCCATCATTACCAGACTCCATTTTGAGTAGTTCGGAAGGGAGACTCGGTGTTGTTCAAGAAGTAATAAACTTGGGCAGTTTCGAGAATTTGAAAAATTTGGAGGTGAACAATGACAGTTTAACCTCTACGACGGTACTCGATAACGATATCTTCTTCCGAAAAGGCCAGGTTGGGGACTCCAAAAACCATCCAACACCTGAGATGCTCCAGCATCTTGACAACATCACAGAGCACAAGTTGGGCAGTGCTGGTTTGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sulfotransfer_1

Protein Analysis

204

Amino Acids

22.79

Weight (kDa)

4.84

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	51 - 126	1.3e-13	Sulfotransferase domain
Sulfotransfer_1	PF00685	133 - 197	7.2e-09	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18590 AT1G74090 AT1G74100
fragaria_vesca	FvH4_5g13430 FvH4_5g13440
malus_domestica	MD06G1205100.v1.1 MD14G1216100.v1.1
prunus_persica	Prupe.5G209000_v2.0.a1 Prupe.5G209100_v2.0.a1 Prupe.5G209500_v2.0.a1 Prupe.5G209600_v2.0.a1
pyrus_communis	pycom06g18330 pycom14g17890
rosa_chinensis	RchiOBHm_Chr4g0409371 RchiOBHm_Chr7g0183681
rosa_laevigata	RLG00000005033
rosa_multiflora	Rmu_sc0003610.1_g000024
rosa_roxburghii	Rroxscaffold_3G00270330 Rroxscaffold_5G00353900
rosa_rugosa	Rorug04G0093300
rosa_samantha	Rh4BG154400 Rh4DG148900 Rh7BG060200 Rh7CG061800
rosa_wichuraiana	Rw7G004980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	433, 442
AfaI	GTAC	4 cut(s)	18, 157, 255, 483
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	68, 404, 439, 604
AjnI	CCWGG	2 cut(s)	110, 513
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	433, 442
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	131, 309, 463
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	582
BccI	CCATC	3 cut(s)	225, 358, 543
BciT130I	CCWGG	2 cut(s)	112, 515
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	263, 321
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	112, 515
BmrFI	CCNGG	2 cut(s)	112, 515
BmsI	GCATC	2 cut(s)	540, 568
BpmI	CTGGAG	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	111, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	112, 515
BseDI	CCNNGG	2 cut(s)	111, 142
BseGI	GGATG	2 cut(s)	220, 535
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	22, 121
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	538
BspPI	GGATC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	111, 142
BssMI	GATC	2 cut(s)	22, 121
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	112, 515
Bst4CI	ACNGT	2 cut(s)	464, 481
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	301, 546
BstF5I	GGATG	2 cut(s)	220, 535
BstKTI	GATC	2 cut(s)	25, 124
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	22, 121
BstNI	CCWGG	2 cut(s)	112, 515
BstSCI	CCNGG	2 cut(s)	110, 513
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	220, 535
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	330
Csp6I	GTAC	4 cut(s)	17, 156, 254, 482
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	2 cut(s)	162, 178
CviJI	RGCY	4 cut(s)	110, 166, 173, 513
CviKI_1	RGCY	4 cut(s)	110, 166, 173, 513
CviQI	GTAC	4 cut(s)	17, 156, 254, 482
DdeI	CTNAG	2 cut(s)	301, 546
DpnI	GATC	2 cut(s)	24, 123
DpnII	GATC	2 cut(s)	22, 121
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	110, 513
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	165, 181
FaiI	YATR	3 cut(s)	163, 179, 346
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	2 cut(s)	161, 177
FbaI	TGATCA	1 cut(s)	121
FokI	GGATG	2 cut(s)	207, 522
FspBI	CTAG	2 cut(s)	263, 321
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	165, 181
HinfI	GANTC	4 cut(s)	305, 362, 390, 524
HphI	GGTGA	3 cut(s)	131, 309, 463
Hpy166II	GTNNAC	3 cut(s)	254, 277, 454
Hpy188I	TCNGA	2 cut(s)	382, 506
Hpy188III	TCNNGA	7 cut(s)	26, 68, 125, 245, 404, 430, 563
Hpy8I	GTNNAC	3 cut(s)	254, 277, 454
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	3 cut(s)	110, 268, 377
HpyCH4III	ACNGT	2 cut(s)	464, 481
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	2 cut(s)	301, 546
Hsp92II	CATG	2 cut(s)	165, 181
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	22, 121
LmnI	GCTCC	1 cut(s)	558
LweI	GCATC	2 cut(s)	540, 568
MaeI	CTAG	2 cut(s)	263, 321
MalI	GATC	2 cut(s)	24, 123
MboI	GATC	2 cut(s)	22, 121
MboII	GAAGA	8 cut(s)	41, 44, 47, 50, 53, 302, 490, 493
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	4 cut(s)	81, 199, 433, 442
MlyI	GAGTC	3 cut(s)	356, 384, 518
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	5 cut(s)	104, 252, 325, 442, 481
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	168, 467
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	112, 515
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	2 cut(s)	112, 515
NdeII	GATC	2 cut(s)	22, 121
NlaIII	CATG	2 cut(s)	165, 181
PctI	GAATGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	3 cut(s)	356, 384, 518
PpsI	GAGTC	3 cut(s)	356, 384, 518
Psp6I	CCWGG	2 cut(s)	110, 513
PspGI	CCWGG	2 cut(s)	110, 513
RsaI	GTAC	4 cut(s)	18, 157, 255, 483
RsaNI	GTAC	4 cut(s)	17, 156, 254, 482
SaqAI	TTAA	2 cut(s)	168, 467
Sau3AI	GATC	2 cut(s)	22, 121
SchI	GAGTC	3 cut(s)	356, 384, 518
ScrFI	CCNGG	2 cut(s)	112, 515
SduI	GDGCHC	1 cut(s)	582
SetI	ASST	6 cut(s)	121, 322, 453, 473, 519, 547
SfaNI	GCATC	2 cut(s)	540, 568
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	81, 199, 433, 442
SspMI	CTAG	2 cut(s)	263, 321
StyD4I	CCNGG	2 cut(s)	110, 513
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	464, 481
TaqI	TCGA	3 cut(s)	196, 429, 486
TasI	AATT	4 cut(s)	81, 199, 433, 442
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	168, 467
Tru9I	TTAA	2 cut(s)	168, 467
TscAI	CASTG	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	60, 333
TspRI	CASTG	1 cut(s)	598
Vha464I	CTTAAG	1 cut(s)	167
XapI	RAATTY	2 cut(s)	433, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	263, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.