RchiOBHm_Chr7g0183681

sulfotransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006990
Physical Location & Seq
Reverse (-)
4483904 .. 4484203
300 bp
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UTR
Exon/CDS
Intron
PRQ16389

Sequence Viewer

Length: 300 bp
ATGCAGTGGCTCACAAAAAATCCTCATGATTGTGTTCCCTTCCTAGAGTCACAAGTTCACAGCAAAGATAACCCAATCGCCTACCTAGAATCTCTTCCCTCACCTAGATTGCTTGCAACCCACATTTCATACTCATCATTACCAGACTCCATTTTGAATACTTTGGGTACACGGATTGTGTGCATTGCAAGGAACCCTAAAGACGTTCTTGTTTCTCAATGGAAGTTTACACAGAAAAATAGGACAAAAAAATTCAAATGGCTAACTTGTGACACCTCTTCCTATACAAGAGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.36

Weight (kDa)

9.51

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 5 - 81 3.1e-16 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 1 cut(s) 169
AgsI TTSAA 2 cut(s) 157, 256
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 93
BfaI CTAG 3 cut(s) 44, 86, 105
BmiI GGNNCC 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 99, 283
BstC8I GCNNGC 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 25
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 26
CviJI RGCY 2 cut(s) 10, 262
CviKI_1 RGCY 2 cut(s) 10, 262
CviQI GTAC 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 99, 283
EarI CTCTTC 2 cut(s) 99, 283
FaeI CATG 1 cut(s) 29
FaiI YATR 3 cut(s) 27, 130, 285
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FatI CATG 1 cut(s) 25
FspBI CTAG 3 cut(s) 44, 86, 105
Hin1II CATG 1 cut(s) 29
HinfI GANTC 3 cut(s) 47, 89, 146
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 3 cut(s) 58, 170, 228
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 3 cut(s) 58, 170, 228
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 4, 116, 183, 188
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 29
LpnPI CCDG 1 cut(s) 156
MaeI CTAG 3 cut(s) 44, 86, 105
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 48, 269
MboII GAAGA 2 cut(s) 86, 270
MluCI AATT 1 cut(s) 251
MlyI GAGTC 2 cut(s) 56, 140
MnlI CCTC 4 cut(s) 33, 109, 284, 286
MroXI GAANNNNTTC 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 30
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 48, 269
PagI TCATGA 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 89
PleI GAGTC 2 cut(s) 55, 140
PpsI GAGTC 2 cut(s) 55, 140
PspN4I GGNNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 30
SchI GAGTC 2 cut(s) 56, 140
SetI ASST 4 cut(s) 87, 106, 207, 278
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 1 cut(s) 251
SspMI CTAG 3 cut(s) 44, 86, 105
TaiI ACGT 1 cut(s) 207
TasI AATT 1 cut(s) 251
TfiI GAWTC 1 cut(s) 89
TseFI GTSAC 2 cut(s) 48, 269
Tsp45I GTSAC 2 cut(s) 48, 269
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 187
XapI RAATTY 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 3 cut(s) 44, 86, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.