Rorug04G0093300

Sulfotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006990
Physical Location & Seq
Reverse (-)
14391157 .. 14393970
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0093300.1

Sequence Viewer

Length: 450 bp
ATGGAGAATATGATGAACAAGCTCCGAAATTTGGACGCGTACCCCAAAATCAATGAAGATTTCTACAGCCGTACCCTCTCCAGCGGCGTCATCACTCTCGCCTCCTCCATCGTTATGCTCCTGCGATCTTTCTGTCTGACTCCGATTTGGTCTTATGCAGTAAGACGTGCGCACTCTGTTGTTCCAGCCATTTATGTTATAAAAGTGGCTATTCCTAAAACTTCACCTCCACCCACACTTGATGAAAGTAGTTTTGATTGGGATTCTGGAAGCACACACGTCTATCATTGTTACGTCAACGTGGATGGGAGTTACAGATTCAAGGTTATGAATTTGACAGACAATATCCAGATTATACTGGATGCTTTGAGAATGTCAACTGTGGTGGAAGTACAGGGTTTGATGTCATCTTCAGAATCTAGTGAAGATGGAGGAAATGAAGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

149

Amino Acids

16.69

Weight (kDa)

5.26

Isoelectric Point (pI)

58.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 8 - 41 2e-06 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
Acc16I TGCGCA 1 cut(s) 171
AccII CGCG 1 cut(s) 38
AciI CCGC 1 cut(s) 84
AcsI RAATTY 2 cut(s) 28, 331
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 41, 73, 393
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 2 cut(s) 36, 277
AgsI TTSAA 1 cut(s) 322
AjiI CACGTC 2 cut(s) 167, 280
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
ApoI RAATTY 2 cut(s) 28, 331
AspLEI GCGC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 216
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BccI CCATC 3 cut(s) 116, 299, 422
BceAI ACGGC 1 cut(s) 54
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmgBI CACGTC 2 cut(s) 167, 280
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 310, 367
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 31
Bsp143I GATC 1 cut(s) 125
BspACI CCGC 1 cut(s) 84
BspFNI CGCG 1 cut(s) 38
BsrI ACTGG 1 cut(s) 363
BssMI GATC 1 cut(s) 125
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 382
BstACI GRCGYC 1 cut(s) 87
BstF5I GGATG 2 cut(s) 310, 367
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 1 cut(s) 38
BtrI CACGTC 2 cut(s) 167, 280
BtsCI GGATG 2 cut(s) 310, 367
CfoI GCGC 1 cut(s) 172
CseI GACGC 2 cut(s) 44, 76
Csp6I GTAC 3 cut(s) 40, 72, 392
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviJI RGCY 4 cut(s) 22, 69, 188, 209
CviKI_1 RGCY 4 cut(s) 22, 69, 188, 209
CviQI GTAC 3 cut(s) 40, 72, 392
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 396
FaiI YATR 7 cut(s) 11, 116, 156, 195, 200, 329, 356
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 2 cut(s) 317, 374
Fsp4HI GCNGC 1 cut(s) 85
FspAI RTGCGCAY 1 cut(s) 171
FspBI CTAG 1 cut(s) 420
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 64
HgaI GACGC 2 cut(s) 44, 76
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 2 cut(s) 298, 378
HindII GTYRAC 2 cut(s) 298, 378
HinfI GANTC 4 cut(s) 139, 263, 318, 416
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 2 cut(s) 298, 378
Hpy188I TCNGA 5 cut(s) 26, 138, 144, 415, 449
Hpy188III TCNNGA 2 cut(s) 267, 349
Hpy8I GTNNAC 2 cut(s) 298, 378
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 4 cut(s) 166, 279, 294, 300
HpyCH4V TGCA 1 cut(s) 158
HpySE526I ACGT 4 cut(s) 166, 279, 294, 300
Hsp92I GRCGYC 1 cut(s) 87
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 27, 123
LpnPI CCDG 7 cut(s) 94, 134, 198, 252, 344, 362, 380
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 420
MaeII ACGT 4 cut(s) 166, 279, 294, 300
MaeIII GTNAC 2 cut(s) 290, 311
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 3 cut(s) 68, 402, 437
MluCI AATT 2 cut(s) 28, 331
MluI ACGCGT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 5 cut(s) 86, 112, 115, 237, 425
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 84
MvnI CGCG 1 cut(s) 38
NdeII GATC 1 cut(s) 125
NsbI TGCGCA 1 cut(s) 171
PfeI GAWTC 3 cut(s) 263, 318, 416
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 200
RsaI GTAC 3 cut(s) 41, 73, 393
RsaNI GTAC 3 cut(s) 40, 72, 392
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 125
SchI GAGTC 1 cut(s) 133
SetI ASST 7 cut(s) 24, 169, 229, 282, 297, 303, 327
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 28, 331
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 4 cut(s) 169, 282, 297, 303
TasI AATT 2 cut(s) 28, 331
TatI WGTACW 1 cut(s) 391
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 3 cut(s) 263, 318, 416
TspDTI ATGAA 4 cut(s) 29, 69, 258, 344
XapI RAATTY 2 cut(s) 28, 331
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.