Rroxscaffold_3G00270330

Sulfotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006990
Physical Location & Seq
Forward (+)
62913691 .. 62914581
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270330.1

Sequence Viewer

Length: 891 bp
ATGGCTTCTGCGTCTGTACTGGATCAAGAAGAAGAAGAAGAAGATGAAAACAAGATTAGTGGCATTCAAGATTTCCAAGAAATTATCTCAACCCTCCCTAAAGTGAGAGCATGGGAAGGTGATCAGGATTACTACCAATACCAAGGATTTTGGTACCCCCAGATTTTCGTTAAAGGTATCATTTGGGCACAAAAAAGTTTCAGGGCTAGAGAAACCGACATTTTCTTGGCCACGTTTCCGAAGTGTGGTACAACATGGCTTAAGGCTCTCAAGTCTGCTATCCAAAATCGAAATTGCCAATCCCAATCCCATCATCCATTGCTCACAAATAATCCTCATGATTGTGTACCCTTCCTAGAGTTGCAAGTTCACAAAGATAACCCAATCGCCTACCTAGAATCTCTTCCCTCACCTAGATTGCTCGCAACCCACATTTCATACCCATCATTACCAGACTCCATTTTGAGTAGTTCGGGTACACAGATTGTGTGCATTGCAAGGAACCCTAAAGATGTTCTTGTTTCCCTGTGGGAGTTTACACAGAAAATAAGACAAAAAACTTCAAACGGCCAACTTCCACCTCTTCCTATAGAAGAGGCATTTGAATTGTTTTGTAAAGGGCCTTCGATTGGAGGACCCTTTTGGGATCATGTTCTGGGTTATTGGGAAGCAAGCAAGGAAAACCCAAATAAGGTCTTATTTTTTAAGTTTGAGGATATGAAGAAGGACACAGAAAAATGTGTAAAGAGGTTGGCAGAGTTCATGCATCATCCATTTTCGTTGGAAGAAGGGAGAATCGGTGTTGTTCAAGAAGTAATAAACTTGCGCGGTTTCGAGAATTTGAAAAATTTGGAGGTGAACAAAAGTGGGACTGTCGACGGTACTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

296

Amino Acids

33.87

Weight (kDa)

5.68

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 72 - 291 1.4e-55 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 876
AccII CGCG 1 cut(s) 828
AciI CCGC 1 cut(s) 828
AclWI GGATC 2 cut(s) 30, 654
AcoI YGGCCR 2 cut(s) 228, 568
AcsI RAATTY 2 cut(s) 838, 847
AfaI GTAC 6 cut(s) 18, 155, 250, 348, 478, 883
AfiI CCNNNNNNNGG 3 cut(s) 245, 629, 691
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 5 cut(s) 68, 564, 605, 809, 844
AlwI GGATC 2 cut(s) 30, 654
AoxI GGCC 3 cut(s) 228, 568, 620
ApoI RAATTY 2 cut(s) 838, 847
Asp700I GAANNNNTTC 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 2 cut(s) 620, 635
AsuHPI GGTGA 3 cut(s) 131, 402, 868
AvaII GGWCC 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 190
BalI TGGCCA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 607, 639
BccI CCATC 2 cut(s) 318, 451
BceAI ACGGC 1 cut(s) 583
BclI TGATCA 1 cut(s) 121
BfaI CTAG 4 cut(s) 207, 356, 395, 414
BfmI CTRYAG 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 2 cut(s) 620, 635
BmiI GGNNCC 3 cut(s) 155, 503, 637
BmsI GCATC 1 cut(s) 775
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 629, 691
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 2 cut(s) 317, 492
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 313, 769
BseLI CCNNNNNNNGG 3 cut(s) 245, 629, 691
BseMI GCAATG 2 cut(s) 317, 492
BseNI ACTGG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 828
BshFI GGCC 3 cut(s) 230, 570, 622
BshNI GGYRCC 1 cut(s) 153
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 3 cut(s) 245, 629, 691
BsmFI GGGAC 1 cut(s) 883
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 3 cut(s) 230, 570, 622
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 22, 121, 646
BspACI CCGC 1 cut(s) 828
BspANI GGCC 3 cut(s) 230, 570, 622
BspFNI CGCG 1 cut(s) 828
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 155, 503, 637
BspPI GGATC 2 cut(s) 30, 654
BspT107I GGYRCC 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 317, 492
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 3 cut(s) 22, 121, 646
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 874, 881
Bst6I CTCTTC 3 cut(s) 408, 588, 588
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 423, 673
BstF5I GGATG 2 cut(s) 313, 769
BstFNI CGCG 1 cut(s) 828
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 3 cut(s) 25, 124, 649
BstMBI GATC 3 cut(s) 22, 121, 646
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 1 cut(s) 190
BstUI CGCG 1 cut(s) 828
BsuRI GGCC 3 cut(s) 230, 570, 622
BtsCI GGATG 2 cut(s) 313, 769
Cac8I GCNNGC 2 cut(s) 423, 673
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 828
Cfr13I GGNCC 2 cut(s) 620, 635
Csp6I GTAC 6 cut(s) 17, 154, 249, 347, 477, 882
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 5 cut(s) 111, 255, 338, 650, 763
CviJI RGCY 7 cut(s) 5, 206, 230, 259, 266, 570, 622
CviKI_1 RGCY 7 cut(s) 5, 206, 230, 259, 266, 570, 622
CviQI GTAC 6 cut(s) 17, 154, 249, 347, 477, 882
DpnI GATC 3 cut(s) 24, 123, 648
DpnII GATC 3 cut(s) 22, 121, 646
EaeI YGGCCR 2 cut(s) 228, 568
Eam1104I CTCTTC 3 cut(s) 408, 588, 588
EarI CTCTTC 3 cut(s) 408, 588, 588
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 635
EcoO109I RGGNCCY 2 cut(s) 620, 635
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 5 cut(s) 114, 258, 341, 653, 766
FaiI YATR 8 cut(s) 112, 256, 339, 439, 590, 651, 719, 764
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 883
FatI CATG 5 cut(s) 110, 254, 337, 649, 762
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 876
FokI GGATG 2 cut(s) 300, 756
FspBI CTAG 4 cut(s) 207, 356, 395, 414
GlaI GCGC 1 cut(s) 827
HaeIII GGCC 3 cut(s) 230, 570, 622
HhaI GCGC 1 cut(s) 828
Hin1II CATG 5 cut(s) 114, 258, 341, 653, 766
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HinfI GANTC 3 cut(s) 398, 455, 795
HphI GGTGA 3 cut(s) 131, 402, 868
Hpy166II GTNNAC 6 cut(s) 347, 370, 479, 537, 859, 877
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 6 cut(s) 26, 68, 125, 338, 809, 835
Hpy8I GTNNAC 6 cut(s) 347, 370, 479, 537, 859, 877
Hpy99I CGWCG 1 cut(s) 881
HpyAV CCTTC 5 cut(s) 110, 361, 633, 718, 782
HpyCH4III ACNGT 2 cut(s) 874, 881
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 4 cut(s) 364, 492, 497, 766
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 5 cut(s) 114, 258, 341, 653, 766
HspAI GCGC 1 cut(s) 826
KpnI GGTACC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 22, 121, 646
LpnPI CCDG 7 cut(s) 5, 110, 173, 187, 465, 539, 641
LweI GCATC 1 cut(s) 775
MaeI CTAG 4 cut(s) 207, 356, 395, 414
MaeII ACGT 1 cut(s) 233
MalI GATC 3 cut(s) 24, 123, 648
MboI GATC 3 cut(s) 22, 121, 646
MhlI GDGCHC 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 5 cut(s) 81, 292, 605, 838, 847
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 762
MnlI CCTC 9 cut(s) 104, 345, 418, 589, 591, 626, 706, 741, 847
Mox20I TGGCCA 1 cut(s) 230
Mph1103I ATGCAT 1 cut(s) 768
MroXI GAANNNNTTC 1 cut(s) 402
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 171, 261, 705
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 63
MvnI CGCG 1 cut(s) 828
NdeII GATC 3 cut(s) 22, 121, 646
NlaIII CATG 5 cut(s) 114, 258, 341, 653, 766
NlaIV GGNNCC 3 cut(s) 155, 503, 637
NsiI ATGCAT 1 cut(s) 768
PagI TCATGA 1 cut(s) 337
PctI GAATGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 398, 795
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
PspN4I GGNNCC 3 cut(s) 155, 503, 637
PspPI GGNCC 2 cut(s) 620, 635
PspPPI RGGWCCY 1 cut(s) 635
RsaI GTAC 6 cut(s) 18, 155, 250, 348, 478, 883
RsaNI GTAC 6 cut(s) 17, 154, 249, 347, 477, 882
RseI CAYNNNNRTG 1 cut(s) 342
SalI GTCGAC 1 cut(s) 875
SaqAI TTAA 3 cut(s) 171, 261, 705
Sau3AI GATC 3 cut(s) 22, 121, 646
Sau96I GGNCC 2 cut(s) 620, 635
SchI GAGTC 1 cut(s) 449
SduI GDGCHC 1 cut(s) 190
SetI ASST 9 cut(s) 121, 178, 236, 396, 415, 583, 696, 752, 858
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 1 cut(s) 588
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 2 cut(s) 260, 269
SmoI CTYRAG 2 cut(s) 260, 269
Sse9I AATT 5 cut(s) 81, 292, 605, 838, 847
SsiI CCGC 1 cut(s) 828
SspMI CTAG 4 cut(s) 207, 356, 395, 414
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 874, 881
TaiI ACGT 1 cut(s) 236
TaqI TCGA 5 cut(s) 289, 626, 834, 876, 886
TasI AATT 5 cut(s) 81, 292, 605, 838, 847
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 2 cut(s) 398, 795
Tru1I TTAA 3 cut(s) 171, 261, 705
Tru9I TTAA 3 cut(s) 171, 261, 705
TspDTI ATGAA 4 cut(s) 60, 426, 734, 751
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 2 cut(s) 838, 847
XmiI GTMKAC 1 cut(s) 876
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 4 cut(s) 207, 356, 395, 414
Zsp2I ATGCAT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.