Rh4BG154400

Sulfotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006990
Physical Location & Seq
Forward (+)
27753582 .. 27754004
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG154400.1

Sequence Viewer

Length: 423 bp
ATGATTCTTGAAGGTATCATTTTGGCACAGCAAAGTTTTAGGGCTAGAGACAACGACATTATCTTGGCCGCTTTTCCAAAATGTGGCACCACATGGACTAAGGCTCTCATGTTTGCTATCCAAAATCAAAACCGTTATGGTCAAGATCACTCATCCCAATCCTTTCAACCATTGCTCACAAAAAACCCTCATAATGTCGTACCTTATCTAGCGTTACACGTTGATAAAGATAATCCAATTGCCTATCTAGACTCTCTTCTCTCACCTAGATTGCTCTCAACCCACAGTTCATACCTATCACTACCAAACTCGGTTTTGAATTATCCTAATGCTTGGTTTGTGTGCATTGCAAGAAGCCCTAAAGTTGTTCTTGTTTTCTCTATGGGCCTTTCATCTCAACACAAGACCACCAAATTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

140

Amino Acids

15.76

Weight (kDa)

9.55

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 17 - 127 9.3e-18 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 11, 167, 319, 418
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 2 cut(s) 66, 385
ApoI RAATTY 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 255
BanI GGYRCC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 4 cut(s) 45, 209, 248, 267
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse3DI GCAATG 2 cut(s) 170, 345
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 170, 345
BshFI GGCC 2 cut(s) 68, 387
BshNI GGYRCC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 2 cut(s) 68, 387
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 68, 387
BspLI GGNNCC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 170, 345
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 134, 287
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 68, 387
BtsCI GGATG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 93, 109
CviJI RGCY 5 cut(s) 44, 68, 104, 357, 387
CviKI_1 RGCY 5 cut(s) 44, 68, 104, 357, 387
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
FaeI CATG 2 cut(s) 96, 112
FaiI YATR 6 cut(s) 94, 110, 138, 192, 292, 383
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 2 cut(s) 92, 108
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 4 cut(s) 45, 209, 248, 267
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 68, 387
Hin1II CATG 2 cut(s) 96, 112
HinfI GANTC 2 cut(s) 4, 251
HphI GGTGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 8, 143, 248
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 2 cut(s) 134, 287
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 345, 350
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 96, 112
Kzo9I GATC 1 cut(s) 145
MaeI CTAG 4 cut(s) 45, 209, 248, 267
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 237, 319, 413
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 1 cut(s) 198
MunI CAATTG 1 cut(s) 237
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 96, 112
NlaIV GGNNCC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 385
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 1 cut(s) 245
SetI ASST 5 cut(s) 16, 205, 222, 268, 297
Sse9I AATT 3 cut(s) 237, 319, 413
SsiI CCGC 1 cut(s) 69
SspMI CTAG 4 cut(s) 45, 209, 248, 267
TaaI ACNGT 2 cut(s) 134, 287
TaiI ACGT 1 cut(s) 222
TasI AATT 3 cut(s) 237, 319, 413
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 279, 381
Van91I CCANNNNNTGG 1 cut(s) 83
XapI RAATTY 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 247
XspI CTAG 4 cut(s) 45, 209, 248, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.