Rroxscaffold_5G00353900

Sulfotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006990
Physical Location & Seq
Forward (+)
31865667 .. 31871401
5735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353900.1

Sequence Viewer

Length: 684 bp
ATGGCGGCGGAGGACACGGCTTTTCGATTAACTTGGTATGGCCTGAAAGTATACAAGGCTTTTGGTAAGGTGAATACTACTACCAATACCAAAAGCTATCCCAAGATGATTCTTGAAGGTATCATTTTGGCACAGCAAAGTTTTAGGGCTAGAGACAACGACATTATCTTGGCCGCTTTTGCAAAATGTGGCACCACATGGACTAAGGCTCTCATGTTTGCTATCCAAAATCAAAACCGTTATGGTCAAGATCACTCATCCCAATCCTTTCATCCATTGTTCACAAAAAACCCTCATAATGTTGTACCTTTTCTAGAGTTACAAGTTGATAAAGATAATCCAATTGCCTATTTAGACTCTCTTCCCTCACCTAGGTTGCTCTCAACCCACAGTTCATACCTATCAATACCAAACTCGGTTTTGAATAATCCGAATACTCGGATTGTGTGCATTGCAAATAACCCTAAAGATGTTCTTGATTCTCTATGGGCCTTTCATCTCAACACAAGACCACCAAATTCAAATAACAAACTTTGGCAACGTGATTTTCCTATAGAAGAGCTTCCTATAGAGGAGGCATTTCAGTGGTTTTGTATAGGGGTTTCAGTTGGAGGACCGTTTTGGGATCATGTATTAGGTTATTGGAAAGCAAGCATTGAAAACCCAAATAAGGTGTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

227

Amino Acids

25.88

Weight (kDa)

8.39

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 52 - 227 5e-34 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 51
AciI CCGC 3 cut(s) 5, 8, 174
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 517
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 372, 670
AgsI TTSAA 4 cut(s) 116, 424, 522, 659
AluBI AGCT 2 cut(s) 96, 562
AluI AGCT 2 cut(s) 96, 562
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 633
AoxI GGCC 3 cut(s) 40, 171, 489
ApoI RAATTY 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 561
AspA2I CCTAGG 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 489, 614
AsuHPI GGTGA 2 cut(s) 82, 360
AvaII GGWCC 1 cut(s) 614
AvrII CCTAGG 1 cut(s) 371
BanI GGYRCC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 3 cut(s) 150, 314, 372
BfmI CTRYAG 2 cut(s) 552, 567
BisI GCNGC 2 cut(s) 6, 174
BlnI CCTAGG 1 cut(s) 371
BlsI GCNGC 2 cut(s) 7, 175
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 489, 614
BmiI GGNNCC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 670
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 257, 271
BseLI CCNNNNNNNGG 2 cut(s) 372, 670
BseMI GCAATG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 587
BshFI GGCC 3 cut(s) 42, 173, 491
BshNI GGYRCC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 372, 670
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 3 cut(s) 42, 173, 491
Bsp143I GATC 2 cut(s) 250, 625
BspACI CCGC 3 cut(s) 5, 8, 174
BspANI GGCC 3 cut(s) 42, 173, 491
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 633
BspQI GCTCTTC 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 2 cut(s) 250, 625
BssNAI GTATAC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 371
Bst1107I GTATAC 1 cut(s) 52
Bst4CI ACNGT 3 cut(s) 239, 392, 618
Bst6I CTCTTC 2 cut(s) 366, 552
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 257, 271
BstKTI GATC 2 cut(s) 253, 628
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 250, 625
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 552, 567
BstZ17I GTATAC 1 cut(s) 52
BsuRI GGCC 3 cut(s) 42, 173, 491
BtsCI GGATG 2 cut(s) 257, 271
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 489, 614
Csp6I GTAC 1 cut(s) 305
CviAII CATG 3 cut(s) 198, 214, 629
CviJI RGCY 9 cut(s) 20, 42, 59, 96, 149, 173, 209, 491, 562
CviKI_1 RGCY 9 cut(s) 20, 42, 59, 96, 149, 173, 209, 491, 562
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 252, 627
DpnII GATC 2 cut(s) 250, 625
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 366, 552
EarI CTCTTC 2 cut(s) 366, 552
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 614
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 201, 217, 632
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 3 cut(s) 197, 213, 628
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 6, 174
FokI GGATG 2 cut(s) 244, 258
Fsp4HI GCNGC 2 cut(s) 6, 174
FspBI CTAG 3 cut(s) 150, 314, 372
GluI GCNGC 2 cut(s) 6, 174
HaeIII GGCC 3 cut(s) 42, 173, 491
Hin1II CATG 3 cut(s) 201, 217, 632
HinfI GANTC 3 cut(s) 109, 356, 479
HphI GGTGA 2 cut(s) 82, 360
Hpy166II GTNNAC 2 cut(s) 52, 282
Hpy188I TCNGA 2 cut(s) 432, 441
Hpy188III TCNNGA 4 cut(s) 113, 248, 314, 476
Hpy8I GTNNAC 2 cut(s) 52, 282
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 3 cut(s) 239, 392, 618
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 3 cut(s) 182, 450, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 3 cut(s) 201, 217, 632
Kzo9I GATC 2 cut(s) 250, 625
LguI GCTCTTC 1 cut(s) 552
LpnPI CCDG 1 cut(s) 56
MaeI CTAG 3 cut(s) 150, 314, 372
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 1 cut(s) 318
MalI GATC 2 cut(s) 252, 627
MboI GATC 2 cut(s) 250, 625
MboII GAAGA 2 cut(s) 353, 569
MfeI CAATTG 1 cut(s) 342
MluCI AATT 2 cut(s) 342, 517
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 6 cut(s) 4, 303, 376, 565, 568, 605
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 583
MunI CAATTG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 250, 625
NlaIII CATG 3 cut(s) 201, 217, 632
NlaIV GGNNCC 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 109, 479
PkrI GCNGC 2 cut(s) 7, 175
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 489, 614
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 583
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 6, 174
Sau3AI GATC 2 cut(s) 250, 625
Sau96I GGNCC 2 cut(s) 489, 614
SchI GAGTC 1 cut(s) 350
SfcI CTRYAG 2 cut(s) 552, 567
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 583
Sse9I AATT 2 cut(s) 342, 517
SsiI CCGC 3 cut(s) 5, 8, 174
SspMI CTAG 3 cut(s) 150, 314, 372
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 239, 392, 618
TaiI ACGT 1 cut(s) 544
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 342, 517
TauI GCSGC 2 cut(s) 8, 176
TfiI GAWTC 2 cut(s) 109, 479
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 590
TspDTI ATGAA 3 cut(s) 260, 384, 485
TspRI CASTG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 370
XapI RAATTY 1 cut(s) 517
XbaI TCTAGA 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 3 cut(s) 150, 314, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.