Rh4DG148900

Sulfotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006990
Physical Location & Seq
Forward (+)
29793961 .. 29794590
630 bp
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UTR
Exon/CDS
Intron
Rh4DG148900.1

Sequence Viewer

Length: 492 bp
ATGATTCTTGAAGGTATCATTTTGGCACAGCAAAGTTTTAGGGGTAGAGACAAAGACATTATCTTGGCCGCTTTTCCAAAATGTGGCACCACATGGACTAAGGCTGCCATGTTTGCTATCCAAAATCAAAACCGTTATGGTCAAGATCAGTCCTCCCAATCCCTTCATCCATTGCTCACAAAAAACCCTCATAATGTCGTACCTTTTCTAGAGTTGCACGTTGATAAAGATAATCCAATTGCCTATCTACACCTTCTTCTCTCACCTAGATTGCTCTCAACCCACAGTTCATACCTACCACTACCAAACTCGGTTTTGAATTATCCTAATGCTTGGATTGTGTGCATTGCAAGAAACCCTAAAGTTGTTCTTGTTTCTCTATGGGCCTTTCATCTCAACACAAGACCACCAAATTCAAATAACAAACTTTGGCAACGTGATTTTCCTATAGAAGAGCTGAAGAGGCATTTCAGTTGTTTTGTAAAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sulfotransfer_1

Protein Analysis

163

Amino Acids

18.67

Weight (kDa)

9.58

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 17 - 146 9.9e-24 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 11, 319, 417
AluBI AGCT 1 cut(s) 457
AluI AGCT 1 cut(s) 457
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 2 cut(s) 66, 384
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 255
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 209, 267
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 69, 105
BlsI GCNGC 2 cut(s) 70, 106
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse3DI GCAATG 2 cut(s) 170, 345
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 170, 345
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 2 cut(s) 68, 386
BshNI GGYRCC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 2 cut(s) 68, 386
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 68, 386
BspLI GGNNCC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 170, 345
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 134, 287
Bst6I CTCTTC 2 cut(s) 447, 455
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 113, 463
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 68, 386
BtsCI GGATG 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 93, 109
CviJI RGCY 4 cut(s) 68, 104, 386, 457
CviKI_1 RGCY 4 cut(s) 68, 104, 386, 457
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 447, 455
EarI CTCTTC 2 cut(s) 447, 455
Eco57I CTGAAG 1 cut(s) 479
FaeI CATG 2 cut(s) 96, 112
FaiI YATR 7 cut(s) 94, 110, 138, 192, 292, 382, 449
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 2 cut(s) 92, 108
Fnu4HI GCNGC 2 cut(s) 69, 105
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 69, 105
FspBI CTAG 2 cut(s) 209, 267
GluI GCNGC 2 cut(s) 69, 105
HaeIII GGCC 2 cut(s) 68, 386
Hin1II CATG 2 cut(s) 96, 112
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 8, 143, 209
HpyAV CCTTC 3 cut(s) 5, 173, 263
HpyCH4III ACNGT 2 cut(s) 134, 287
HpyCH4IV ACGT 2 cut(s) 219, 436
HpyCH4V TGCA 3 cut(s) 217, 345, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 463
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 219, 436
Hsp92II CATG 2 cut(s) 96, 112
Kzo9I GATC 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 447
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 2 cut(s) 209, 267
MaeII ACGT 2 cut(s) 219, 436
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 248, 464, 472
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 237, 319, 412
MnlI CCTC 3 cut(s) 163, 198, 456
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 113, 463
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 96, 112
NlaIV GGNNCC 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 2 cut(s) 70, 106
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 384
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 447
SatI GCNGC 2 cut(s) 69, 105
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 384
SetI ASST 8 cut(s) 16, 205, 222, 255, 268, 297, 439, 459
SfcI CTRYAG 1 cut(s) 447
Sse9I AATT 3 cut(s) 237, 319, 412
SsiI CCGC 1 cut(s) 69
SspMI CTAG 2 cut(s) 209, 267
TaaI ACNGT 2 cut(s) 134, 287
TaiI ACGT 2 cut(s) 222, 439
TasI AATT 3 cut(s) 237, 319, 412
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 4
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 155, 279, 380
Van91I CCANNNNNTGG 1 cut(s) 83
XapI RAATTY 1 cut(s) 412
XbaI TCTAGA 1 cut(s) 208
XspI CTAG 2 cut(s) 209, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.