FvH4_5g13440

sulfotransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006990
Physical Location & Seq
Forward (+)
7589251 .. 7590266
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13440.t1

Sequence Viewer

Length: 747 bp
ATGTGGTACAACATATGGCTTAAGGCTCTCATGTCTGCTATCCAAAATCGAAATTGTCGATCCCAATCCCATCATCATCCATTGCTCACAAACAATCCTCATGATTGTGTGCCCTTCCTAGAGTTGCTAGCTCACAATGATAACACAAACGCCTACCTAGAATCTCTTCCCTCACCTAGATTGCTGTCAACCCACAGTTCTTACGCATCATTACCAGACTCCATTTTGAATACTCCAGGTACTCGGATTGTGTACATTGCAAGAAACCCTAAAGACGTTCTTGTTTCTTTATCGAAGTTTTCACAGAAAGTTGGACAACTGATTTCAAATGGCCAACTTGTGCCACCTCTTCCTATAGAATTGGCATTTGAGTCGTTTTGTAAAGGGGAATCGAATTCTGGACCTTTTTGGGATCATGTTCTGGGTTATTGGGAAGCAAGCAAGGAAAACCCTGAGAAGGTGTTATTTTTGAAGTATGAAGATATGAAGGAGGACACAGAGGGATGTGTAAAGAGGTTGGCAGTATTCATGCGTCATCCATTTTCGTCAGACGAAGAGAGACAAGGTGTTGTTCAAGAAGTAGTAAACTTGTGCAGTTTCGAGAATTTGAGCAATTTGGAGGTGAACAAAAGTGGGACTTTTGGTCCAATTAACAACAGCCTCTTCTTCAGGAAAGGTCAGGTTGGGGACTCCAGCAACTACCTAACACCTGAGATGCTCCAGCATCTTGACAAAATCACATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.07

Weight (kDa)

5.98

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 6 - 247 7e-58 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 54, 420
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 2 cut(s) 394, 604
AcuI CTGAAG 1 cut(s) 652
AfaI GTAC 3 cut(s) 8, 241, 254
AfiI CCNNNNNNNGG 1 cut(s) 457
AflII CTTAAG 1 cut(s) 20
AgsI TTSAA 4 cut(s) 229, 327, 472, 575
AhdI GACNNNNNGTC 1 cut(s) 642
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 2 cut(s) 54, 420
AoxI GGCC 1 cut(s) 331
ApoI RAATTY 2 cut(s) 394, 604
Asp700I GAANNNNTTC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 401, 644
AsuHPI GGTGA 2 cut(s) 165, 634
AsuNHI GCTAGC 1 cut(s) 127
AvaII GGWCC 2 cut(s) 401, 644
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 333
BccI CCATC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 4 cut(s) 119, 128, 158, 177
BfmI CTRYAG 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 401, 644
BmeRI GACNNNNNGTC 1 cut(s) 642
BmgT120I GGNCC 2 cut(s) 401, 644
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 215, 705, 733
BmtI GCTAGC 1 cut(s) 131
BpmI CTGGAG 3 cut(s) 219, 676, 704
BsaBI GATNNNNATC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse3DI GCAATG 2 cut(s) 80, 255
Bse8I GATNNNNATC 1 cut(s) 64
BseBI CCWGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 76, 509, 535
BseJI GATNNNNATC 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 2 cut(s) 80, 255
BseMII CTCAG 2 cut(s) 444, 702
BseSI GKGCMC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 613
BshFI GGCC 1 cut(s) 333
BslFI GGGAC 2 cut(s) 649, 701
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 2 cut(s) 649, 701
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 59, 412
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 2 cut(s) 445, 703
BspHI TCATGA 1 cut(s) 100
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 54, 420
BspTI CTTAAG 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 80, 255
BsrGI TGTACA 1 cut(s) 252
BssMI GATC 2 cut(s) 59, 412
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 4 cut(s) 171, 354, 549, 668
BstAFI CTTAAG 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 129, 439
BstDEI CTNAG 2 cut(s) 453, 711
BstF5I GGATG 3 cut(s) 76, 509, 535
BstKTI GATC 2 cut(s) 62, 415
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 2 cut(s) 59, 412
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 3 cut(s) 76, 509, 535
Cac8I GCNNGC 2 cut(s) 129, 439
CciI TCATGA 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 401, 644
CseI GACGC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 7, 240, 253
CviAII CATG 4 cut(s) 31, 101, 416, 529
CviJI RGCY 5 cut(s) 19, 26, 131, 333, 660
CviKI_1 RGCY 5 cut(s) 19, 26, 131, 333, 660
CviQI GTAC 3 cut(s) 7, 240, 253
DdeI CTNAG 2 cut(s) 453, 711
DpnI GATC 2 cut(s) 61, 414
DpnII GATC 2 cut(s) 59, 412
DriI GACNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 4 cut(s) 171, 354, 549, 668
Eam1105I GACNNNNNGTC 1 cut(s) 642
EarI CTCTTC 4 cut(s) 171, 354, 549, 668
Eco47I GGWCC 2 cut(s) 401, 644
Eco57I CTGAAG 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 34, 104, 419, 532
FaiI YATR 9 cut(s) 14, 16, 32, 102, 356, 417, 477, 485, 530
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 622, 654
FaqI GGGAC 2 cut(s) 649, 701
FatI CATG 4 cut(s) 30, 100, 415, 528
FauNDI CATATG 1 cut(s) 14
FokI GGATG 3 cut(s) 63, 516, 522
FspBI CTAG 4 cut(s) 119, 128, 158, 177
GsuI CTGGAG 3 cut(s) 219, 676, 704
HaeIII GGCC 1 cut(s) 333
HgaI GACGC 1 cut(s) 521
Hin1II CATG 4 cut(s) 34, 104, 419, 532
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 5 cut(s) 161, 218, 371, 389, 689
HphI GGTGA 2 cut(s) 165, 634
Hpy166II GTNNAC 4 cut(s) 189, 253, 586, 625
Hpy188I TCNGA 2 cut(s) 246, 550
Hpy188III TCNNGA 7 cut(s) 101, 399, 575, 601, 670, 728, 744
Hpy8I GTNNAC 4 cut(s) 189, 253, 586, 625
HpyAV CCTTC 3 cut(s) 124, 451, 481
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 260, 594
HpyF3I CTNAG 2 cut(s) 453, 711
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 34, 104, 419, 532
Kzo9I GATC 2 cut(s) 59, 412
LmnI GCTCC 1 cut(s) 723
LweI GCATC 3 cut(s) 215, 705, 733
MaeI CTAG 4 cut(s) 119, 128, 158, 177
MaeII ACGT 1 cut(s) 276
MalI GATC 2 cut(s) 61, 414
MboI GATC 2 cut(s) 59, 412
MboII GAAGA 6 cut(s) 158, 341, 491, 566, 655, 658
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 6 cut(s) 52, 359, 394, 604, 613, 648
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 3 cut(s) 212, 380, 683
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 8 cut(s) 108, 181, 357, 484, 493, 507, 613, 671
Mox20I TGGCCA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 165
MscI TGGCCA 1 cut(s) 333
MseI TTAA 2 cut(s) 21, 651
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 14
NdeII GATC 2 cut(s) 59, 412
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 4 cut(s) 34, 104, 419, 532
PagI TCATGA 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 161, 389
PleI GAGTC 3 cut(s) 212, 379, 683
PpsI GAGTC 3 cut(s) 212, 379, 683
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspPI GGNCC 2 cut(s) 401, 644
RsaI GTAC 3 cut(s) 8, 241, 254
RsaNI GTAC 3 cut(s) 7, 240, 253
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 21, 651
Sau3AI GATC 2 cut(s) 59, 412
Sau96I GGNCC 2 cut(s) 401, 644
SchI GAGTC 3 cut(s) 212, 380, 683
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 3 cut(s) 215, 705, 733
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 401, 644
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 6 cut(s) 52, 359, 394, 604, 613, 648
SspMI CTAG 4 cut(s) 119, 128, 158, 177
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 279
TaqI TCGA 5 cut(s) 49, 58, 293, 392, 600
TasI AATT 6 cut(s) 52, 359, 394, 604, 613, 648
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 161, 389
Tru1I TTAA 2 cut(s) 21, 651
Tru9I TTAA 2 cut(s) 21, 651
TspDTI ATGAA 3 cut(s) 492, 500, 517
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 401, 644
XapI RAATTY 2 cut(s) 394, 604
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 4 cut(s) 119, 128, 158, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.