Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

14948792 .. 14962453

Gene Structure 13662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23610.t10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3369 bp

ATGAAACCCAAACCCAAATCCCGACCTAGCCGCCGGAGCTCCAAATCCAAATCCCAATCGGACCCCAATCCCCTCGCCGTGACGGTCCTCGACGACAATGTGGTCTGCGACGAACATGCAATGCCGCTCAACTTCGTCGATTCCGGATCTGCATGCCTGCTGGAGATGGCTGCGAAACGCGGCGGAGATGGAATGCAGGGGCAGCGGAGCTTGAGAAGGTCGCCGAGACTGTCTTCATTGCCCGATTTGGCCTCGCCAAGCAAGAGACCTAGGGGTAGTTTGGGAAATGCGGACATTAACAAGTGTGTGAGGAGGTCGCCCAGGCTTGCGTCAGCTGACGTGGAAGCTGCCGGGAATGCTAAAACTAATAGCAACTTCCTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCAAATGGGGGTGAAGAGAAAACTATTCAGAAGTTTACAAGGAGATCTCAGAGGCTGATGAATCAGTCTGAAATGAAATCTTGCCATCAAAAAATTTCAGCACAAGAGGTATCTGCAAGAAGCTTGGAATCTTCTGAAAAGGAATGTTCGAGAGCCTTGTCATTGAGAACTGCTGTTGCTGAGAGATCAGATAGACATATAAAACTTGAAGATTTATCTGATTCGAAGGAGAAGTATCCTTCCAAGAATATTTTTATTGACAATTCGAATGAGAAGAACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCTAATTCCAATTCGAATTCTGGTTCAAAAAGTATGGGTCCTTCCAAGAAGATTATGGTCTCATTAGGATCATCTGATTTCAGAACTTCTGATGGGAAATGCTTGAGGCAATCTCCAAGAAGAGTGGCATCTACATTTGAGGCTACAGGAAAAGAAACAGAATGTGCATTGATTCATTTGCCTGAGACTGAAACTAGAGAAATAGAACATGCTTTGATTGAATTGCCTGAGACATATGTGGATCAACCTCGAAAGAAAGTGAAAACCTTAGGTTCTTCAAACAAAAGAAAAAATATTGGAGAGCCTAGTTTCTTTATTGGAGATCCAATTCCTGATGTTGAAGCACAAGAAAGATGGGGTTGGCGGTATCAAATGAAGAGTCAAAGATCTAAACGTCAGAGCATGAAGCTAAATGATGATGAAGAAGACGAGATAGTTTTGAATGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAGGATGTGGGGAGGATCTTAGAGTTTTTCAGAACAACTGATGGAGAAAATTATTTCCGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTCCCATGACAAGAGACGTTTATTCTATTCAACTATAATGAATGATAATTTGATAGATTGCATCATTTCAAAAGTTGATGTTACTCAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTTTGTCGTCTGACTTTTATTACGATATGGAATACTGCATTGACTATTCCACATTTCGCACCATGGTTCCTGATAATTCTCTTAGGAGCCATAGTATCTCATCAAGCAATCTGAACAAAATGGTGCCTACCTTGCGAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTGCAATGCAGAGTTTTCACTTTTAGATCTCTATAGTGGTTGTGGTGGAATGTCCACTGGATTGTGCCTTGGTACCAAACTTTCCTCTGTTAACCTTGCCACGAAATGGGCCCTTGACAGTGATAAGTCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAGGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAAACAGTATGAGGTTGATAATGCAGAGACAACTACTCGATCAAGATCAGAGACCCCAGAGACCTCAAGAGTACCCAAGCATGATGATGAGATTACCACTGGTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGTCAGGCAAGCGTGGAGTAAACTTCAAGTTGCATTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAAATGCAAAGAGAGGATACAAGATTTTGTAAGAAATGGGAGGAAGCTGAAGATCTTGCCACTTCCAGGTGATGTTGATGTAATTTGTGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAACCTCGACTCTCCTTTGGAAGATGAGAGAAATCGTCAAATTATAGTATTCATGGATATAGTCAATCTGTTAAAGCCGAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTGGGAAGGTATGCTCTTAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCCGGTTGTTATGGTCTTCCACAATTTCGACTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTCCCTCGTCCCACACATGATGTTATAATTAGATACTGGCCTCCGCCAGAGTATGAGCGCAATCTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTGGAAAAAGCTATTGTTCTTCAAGATGCCATCTCTGACCTCCCCGCTGTGAAGCACAATGAAAAAAGTGAAGAAATGTCATTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGTTATGCCTTAGATGACACTATGAAAAAGGAAAATTTGCTATATGACCATCGATCTTTACCTTTACACGAAGATGATTACGCTCGAGTTTGTCAGATTCCAAAACAAAAGGGAGCAAATTTCCGGGATTTACCTGGTGTTGTTGTAGGAAGAGACAATGTAGCTCGGAGGGATTTGACTGAAAAGCAGTTGGTGTTACCATCTGGAAAGCCATTGGTACCAGATTATGCCTTTACTTTTGAACAAGGGAAGTCTAAGAGACCATTTGGGAGGTTATGGTGGGATGAGACTGTCGCCACTGTATTGACGTTCCCAAGTTGTCACAACCAGGACCGAATCCTCACTTTACGAGAATGTGCAAGATTGCAAGGGTTTCCTGATTATTATAGGTTCTGTGGTACGGTTAAAGAGAGGTACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTGGCGCGAGCTTTAGGATATGCATTGGGATTGGCAGTACACAAATCCAGTGGGAACGAACCATTGCTGACTCTGCCTCCAAAGTTCTCTCATTCAAACTATATTCAATTCACACAAATTTTTCCCCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1123

Amino Acids

126.62

Weight (kDa)

8.73

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	408 - 512	1.6e-15	BAH domain
Chromo	PF00385	669 - 723	5.8e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	727 - 918	1.2e-20	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2573
AasI	GACNNNNNNGTC	1 cut(s)	101
Acc65I	GGTACC	2 cut(s)	1742, 3004
AccB1I	GGYRCC	3 cut(s)	1618, 1742, 3004
AccB7I	CCANNNNNTGG	1 cut(s)	1776
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	2 cut(s)	180, 3241
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	9 cut(s)	31, 125, 180, 183, 205, 290, 1096, 2591, 2688
AclWI	GGATC	6 cut(s)	154, 421, 808, 981, 1049, 1286
AcsI	RAATTY	6 cut(s)	507, 748, 2003, 2821, 2905, 3351
AcuI	CTGAAG	3 cut(s)	365, 1204, 2207
AfaI	GTAC	7 cut(s)	1245, 1744, 1971, 3006, 3187, 3203, 3273
AfiI	CCNNNNNNNGG	6 cut(s)	724, 1475, 1776, 2129, 2204, 2243
AflII	CTTAAG	1 cut(s)	2134
AflIII	ACRYGT	1 cut(s)	1837
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	5 cut(s)	320, 2015, 2203, 2920, 3114
Alw21I	GWGCWC	2 cut(s)	41, 2524
AlwI	GGATC	6 cut(s)	154, 421, 808, 981, 1049, 1286
AlwNI	CAGNNNCTG	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	2871
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	4 cut(s)	249, 1779, 2230, 2585
ApaI	GGGCCC	2 cut(s)	1783, 2234
ApeKI	GCWGC	7 cut(s)	170, 202, 347, 728, 731, 1853, 2468
ApoI	RAATTY	6 cut(s)	507, 748, 2003, 2821, 2905, 3351
ArsI	GACNNNNNNTTYG	2 cut(s)	1096, 1128
Asp718I	GGTACC	2 cut(s)	1742, 3004
AspA2I	CCTAGG	2 cut(s)	269, 1469
AspLEI	GCGC	2 cut(s)	2607, 3241
AspS9I	GGNCC	8 cut(s)	61, 85, 770, 1779, 1780, 2230, 2231, 3118
AsuC2I	CCSGG	2 cut(s)	352, 2912
AsuHPI	GGTGA	5 cut(s)	437, 1458, 2012, 2051, 2219
AsuII	TTCGAA	3 cut(s)	638, 680, 746
AvaI	CYCGRG	1 cut(s)	2871
AvaII	GGWCC	4 cut(s)	61, 85, 770, 3118
AvrII	CCTAGG	2 cut(s)	269, 1469
AxyI	CCTNAGG	1 cut(s)	1000
BaeGI	GKGCMC	2 cut(s)	1783, 2234
BanI	GGYRCC	3 cut(s)	1618, 1742, 3004
BanII	GRGCYC	3 cut(s)	41, 1783, 2234
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
BauI	CACGAG	1 cut(s)	2637
BbsI	GAAGAC	4 cut(s)	225, 1164, 2477, 2634
Bbv12I	GWGCWC	2 cut(s)	41, 2524
BbvI	GCAGC	7 cut(s)	157, 214, 334, 740, 743, 1840, 2455
BceAI	ACGGC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	5 cut(s)	322, 2017, 2205, 2922, 3116
BciVI	GTATCC	2 cut(s)	660, 2148
BcnI	CCSGG	2 cut(s)	352, 2912
BfaI	CTAG	8 cut(s)	27, 270, 708, 720, 927, 1038, 1470, 2456
BfmI	CTRYAG	2 cut(s)	876, 1702
BfrI	CTTAAG	1 cut(s)	2134
BfuI	GTATCC	2 cut(s)	660, 2148
BglII	AGATCT	5 cut(s)	458, 701, 1118, 1696, 2190
BlnI	CCTAGG	2 cut(s)	269, 1469
Bme1390I	CCNGG	7 cut(s)	322, 352, 2017, 2205, 2912, 2922, 3116
Bme18I	GGWCC	4 cut(s)	61, 85, 770, 3118
BmeT110I	CYCGRG	1 cut(s)	2871
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	8 cut(s)	61, 85, 770, 1779, 1780, 2230, 2231, 3118
BmrFI	CCNGG	7 cut(s)	322, 352, 2017, 2205, 2912, 2922, 3116
BmrI	ACTGGG	1 cut(s)	1653
BmsI	GCATC	4 cut(s)	869, 1224, 1443, 2659
BmuI	ACTGGG	1 cut(s)	1653
BpiI	GAAGAC	4 cut(s)	225, 1164, 2477, 2634
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
BpmI	CTGGAG	1 cut(s)	182
Bpu14I	TTCGAA	3 cut(s)	638, 680, 746
BpuEI	CTTGAG	4 cut(s)	232, 856, 1179, 1948
BpuMI	CCSGG	2 cut(s)	352, 2912
Bsa29I	ATCGAT	1 cut(s)	2839
BsaBI	GATNNNNATC	1 cut(s)	1942
BsaI	GGTCTC	5 cut(s)	259, 796, 1943, 1952, 3040
BsaJI	CCNNGG	7 cut(s)	269, 320, 1469, 1557, 1738, 1857, 2242
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	1573, 1603, 3295, 3325
Bsc4I	CCNNNNNNNGG	6 cut(s)	724, 1475, 1776, 2129, 2204, 2243
Bse118I	RCCGGY	1 cut(s)	2471
Bse1I	ACTGG	5 cut(s)	1659, 1732, 2002, 2588, 3282
Bse21I	CCTNAGG	1 cut(s)	1000
Bse3DI	GCAATG	4 cut(s)	126, 236, 1681, 3296
Bse8I	GATNNNNATC	1 cut(s)	1942
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	5 cut(s)	322, 2017, 2205, 2922, 3116
BseCI	ATCGAT	1 cut(s)	2839
BseDI	CCNNGG	7 cut(s)	269, 320, 1469, 1557, 1738, 1857, 2242
BseGI	GGATG	4 cut(s)	1273, 1825, 2524, 3076
BseJI	GATNNNNATC	1 cut(s)	1942
BseLI	CCNNNNNNNGG	6 cut(s)	724, 1475, 1776, 2129, 2204, 2243
BseMI	GCAATG	4 cut(s)	126, 236, 1681, 3296
BseMII	CTCAG	7 cut(s)	476, 585, 906, 951, 1472, 2375, 2523
BseNI	ACTGG	5 cut(s)	1659, 1732, 2002, 2588, 3282
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	2 cut(s)	1783, 2234
BseXI	GCAGC	7 cut(s)	157, 214, 334, 740, 743, 1840, 2455
BsgI	GTGCAG	1 cut(s)	2453
Bsh1236I	CGCG	2 cut(s)	180, 3241
BshFI	GGCC	4 cut(s)	251, 1781, 2232, 2587
BshNI	GGYRCC	3 cut(s)	1618, 1742, 3004
BshVI	ATCGAT	1 cut(s)	2839
BsiHKAI	GWGCWC	2 cut(s)	41, 2524
BsiHKCI	CYCGRG	1 cut(s)	2871
BsiSI	CCGG	5 cut(s)	34, 144, 351, 2472, 2911
BslFI	GGGAC	2 cut(s)	1641, 2541
BslI	CCNNNNNNNGG	6 cut(s)	724, 1475, 1776, 2129, 2204, 2243
BsmBI	CGTCTC	1 cut(s)	1381
BsmFI	GGGAC	2 cut(s)	1641, 2541
BsmI	GAATGC	3 cut(s)	198, 361, 1187
BsnI	GGCC	4 cut(s)	251, 1781, 2232, 2587
Bso31I	GGTCTC	5 cut(s)	259, 796, 1943, 1952, 3040
BsoBI	CYCGRG	1 cut(s)	2871
Bsp119I	TTCGAA	3 cut(s)	638, 680, 746
Bsp120I	GGGCCC	2 cut(s)	1779, 2230
Bsp1286I	GDGCHC	4 cut(s)	41, 1783, 2234, 2524
Bsp13I	TCCGGA	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	1243
Bsp19I	CCATGG	1 cut(s)	1557
BspACI	CCGC	9 cut(s)	31, 125, 180, 183, 205, 290, 1096, 2591, 2688
BspANI	GGCC	4 cut(s)	251, 1781, 2232, 2587
BspCNI	CTCAG	7 cut(s)	475, 586, 907, 952, 1471, 2376, 2524
BspDI	ATCGAT	1 cut(s)	2839
BspEI	TCCGGA	1 cut(s)	143
BspFNI	CGCG	2 cut(s)	180, 3241
BspPI	GGATC	6 cut(s)	154, 421, 808, 981, 1049, 1286
BspT104I	TTCGAA	3 cut(s)	638, 680, 746
BspT107I	GGYRCC	3 cut(s)	1618, 1742, 3004
BspTI	CTTAAG	1 cut(s)	2134
BspTNI	GGTCTC	5 cut(s)	259, 796, 1943, 1952, 3040
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	4 cut(s)	126, 236, 1681, 3296
BsrFI	RCCGGY	1 cut(s)	2471
BsrGI	TGTACA	1 cut(s)	1243
BsrI	ACTGG	5 cut(s)	1659, 1732, 2002, 2588, 3282
BssAI	RCCGGY	1 cut(s)	2471
BssECI	CCNNGG	7 cut(s)	269, 320, 1469, 1557, 1738, 1857, 2242
BssSI	CACGAG	1 cut(s)	2637
BssT1I	CCWWGG	5 cut(s)	269, 1469, 1557, 1738, 2242
Bst2BI	CACGAG	1 cut(s)	2637
Bst2UI	CCWGG	5 cut(s)	322, 2017, 2205, 2922, 3116
Bst6I	CTCTTC	4 cut(s)	423, 847, 1103, 2932
BstAFI	CTTAAG	1 cut(s)	2134
BstAUI	TGTACA	1 cut(s)	1243
BstBI	TTCGAA	3 cut(s)	638, 680, 746
BstC8I	GCNNGC	5 cut(s)	154, 158, 327, 2060, 3243
BstDSI	CCRYGG	1 cut(s)	1557
BstEII	GGTNACC	1 cut(s)	2039
BstENI	CCTNNNNNAGG	2 cut(s)	1473, 2241
BstF5I	GGATG	4 cut(s)	1273, 1825, 2524, 3076
BstFNI	CGCG	2 cut(s)	180, 3241
BstHHI	GCGC	2 cut(s)	2607, 3241
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 202, 356, 1627, 2238, 2262, 3307
BstNI	CCWGG	5 cut(s)	322, 2017, 2205, 2922, 3116
BstNSI	RCATGY	4 cut(s)	119, 156, 944, 1841
BstPI	GGTNACC	1 cut(s)	2039
BstSCI	CCNGG	7 cut(s)	320, 350, 2015, 2203, 2910, 2920, 3114
BstSFI	CTRYAG	2 cut(s)	876, 1702
BstSLI	GKGCMC	2 cut(s)	1783, 2234
BstUI	CGCG	2 cut(s)	180, 3241
BstV1I	GCAGC	7 cut(s)	157, 214, 334, 740, 743, 1840, 2455
BstV2I	GAAGAC	4 cut(s)	225, 1164, 2477, 2634
BstX2I	RGATCY	8 cut(s)	146, 458, 701, 1054, 1118, 1278, 1696, 2190
BstXI	CCANNNNNNTGG	1 cut(s)	1645
BstYI	RGATCY	8 cut(s)	146, 458, 701, 1054, 1118, 1278, 1696, 2190
Bsu15I	ATCGAT	1 cut(s)	2839
Bsu36I	CCTNAGG	1 cut(s)	1000
BsuI	GTATCC	2 cut(s)	660, 2148
BsuRI	GGCC	4 cut(s)	251, 1781, 2232, 2587
BsuTUI	ATCGAT	1 cut(s)	2839
BtgI	CCRYGG	1 cut(s)	1557
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	4 cut(s)	1273, 1825, 2524, 3076
BtsI	GCAGTG	1 cut(s)	2110
BtsIMutI	CAGTG	7 cut(s)	1334, 1725, 1795, 1995, 2110, 3084, 3289
Cac8I	GCNNGC	5 cut(s)	154, 158, 327, 2060, 3243
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	2 cut(s)	2607, 3241
Cfr10I	RCCGGY	1 cut(s)	2471
Cfr13I	GGNCC	8 cut(s)	61, 85, 770, 1779, 1780, 2230, 2231, 3118
ClaI	ATCGAT	1 cut(s)	2839
CseI	GACGC	1 cut(s)	318
CsiI	ACCWGGT	1 cut(s)	2920
Csp6I	GTAC	7 cut(s)	1244, 1743, 1970, 3005, 3186, 3202, 3272
CspCI	CAANNNNNGTGG	6 cut(s)	837, 872, 3216, 3251, 3265, 3300
CviQI	GTAC	7 cut(s)	1244, 1743, 1970, 3005, 3186, 3202, 3272
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	4 cut(s)	423, 847, 1103, 2932
EarI	CTCTTC	4 cut(s)	423, 847, 1103, 2932
EciI	GGCGGA	2 cut(s)	198, 2580
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	5 cut(s)	269, 1469, 1557, 1738, 2242
Eco24I	GRGCYC	3 cut(s)	41, 1783, 2234
Eco31I	GGTCTC	5 cut(s)	259, 796, 1943, 1952, 3040
Eco32I	GATATC	2 cut(s)	1464, 2029
Eco47I	GGWCC	4 cut(s)	61, 85, 770, 3118
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	3 cut(s)	365, 1204, 2207
Eco81I	CCTNAGG	1 cut(s)	1000
Eco88I	CYCGRG	1 cut(s)	2871
Eco91I	GGTNACC	1 cut(s)	2039
EcoICRI	GAGCTC	1 cut(s)	39
EcoNI	CCTNNNNNAGG	2 cut(s)	1473, 2241
EcoO109I	RGGNCCY	3 cut(s)	770, 1780, 2230
EcoO65I	GGTNACC	1 cut(s)	2039
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	5 cut(s)	320, 2015, 2203, 2920, 3114
EcoRV	GATATC	2 cut(s)	1464, 2029
EcoT14I	CCWWGG	5 cut(s)	269, 1469, 1557, 1738, 2242
EcoT22I	ATGCAT	1 cut(s)	3259
EcoT38I	GRGCYC	3 cut(s)	41, 1783, 2234
ErhI	CCWWGG	5 cut(s)	269, 1469, 1557, 1738, 2242
Esp3I	CGTCTC	1 cut(s)	1381
FaqI	GGGAC	2 cut(s)	1641, 2541
FauI	CCCGC	1 cut(s)	2695
FauNDI	CATATG	1 cut(s)	967
FokI	GGATG	4 cut(s)	1280, 1812, 2511, 3083
FriOI	GRGCYC	3 cut(s)	41, 1783, 2234
FspBI	CTAG	8 cut(s)	27, 270, 708, 720, 927, 1038, 1470, 2456
GlaI	GCGC	2 cut(s)	2606, 3240
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	251, 1781, 2232, 2587
HapII	CCGG	5 cut(s)	34, 144, 351, 2472, 2911
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	2 cut(s)	2607, 3241
Hin6I	GCGC	2 cut(s)	2605, 3239
HinP1I	GCGC	2 cut(s)	2605, 3239
HincII	GTYRAC	1 cut(s)	1762
HindII	GTYRAC	1 cut(s)	1762
HindIII	AAGCTT	2 cut(s)	535, 1810
HpaI	GTTAAC	1 cut(s)	1762
HpaII	CCGG	5 cut(s)	34, 144, 351, 2472, 2911
HphI	GGTGA	5 cut(s)	437, 1458, 2012, 2051, 2219
Hpy166II	GTNNAC	5 cut(s)	450, 1725, 1762, 2071, 3274
Hpy8I	GTNNAC	5 cut(s)	450, 1725, 1762, 2071, 3274
Hpy99I	CGWCG	3 cut(s)	95, 113, 140
HpyCH4IV	ACGT	4 cut(s)	339, 1126, 1390, 3095
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 202, 356, 1627, 2238, 2262, 3307
HpySE526I	ACGT	4 cut(s)	339, 1126, 1390, 3095
HspAI	GCGC	2 cut(s)	2605, 3239
Kpn2I	TCCGGA	1 cut(s)	143
KpnI	GGTACC	2 cut(s)	1746, 3008
KspAI	GTTAAC	1 cut(s)	1762
LmnI	GCTCC	5 cut(s)	36, 44, 207, 1581, 2900
Lsp1109I	GCAGC	7 cut(s)	157, 214, 334, 740, 743, 1840, 2455
LweI	GCATC	4 cut(s)	869, 1224, 1443, 2659
MabI	ACCWGGT	1 cut(s)	2920
MaeI	CTAG	8 cut(s)	27, 270, 708, 720, 927, 1038, 1470, 2456
MaeII	ACGT	4 cut(s)	339, 1126, 1390, 3095
MaeIII	GTNAC	6 cut(s)	79, 1453, 2039, 2105, 2982, 3107
MbiI	CCGCTC	1 cut(s)	127
MfeI	CAATTG	2 cut(s)	1210, 2124
MflI	RGATCY	8 cut(s)	146, 458, 701, 1054, 1118, 1278, 1696, 2190
MhlI	GDGCHC	4 cut(s)	41, 1783, 2234, 2524
MlyI	GAGTC	3 cut(s)	1120, 2273, 3298
MmeI	TCCRAC	2 cut(s)	1348, 3193
Mph1103I	ATGCAT	1 cut(s)	3259
MroI	TCCGGA	1 cut(s)	143
MseI	TTAA	7 cut(s)	297, 1481, 1761, 1814, 2135, 2342, 3192
MslI	CAYNNNNRTG	2 cut(s)	1983, 2859
MspA1I	CMGCKG	3 cut(s)	205, 335, 2690
MspCI	CTTAAG	1 cut(s)	2134
MspI	CCGG	5 cut(s)	34, 144, 351, 2472, 2911
MspR9I	CCNGG	7 cut(s)	322, 352, 2017, 2205, 2912, 2922, 3116
MunI	CAATTG	2 cut(s)	1210, 2124
Mva1269I	GAATGC	3 cut(s)	198, 361, 1187
MvaI	CCWGG	5 cut(s)	322, 2017, 2205, 2922, 3116
MvnI	CGCG	2 cut(s)	180, 3241
MwoI	GCNNNNNNNGC	7 cut(s)	36, 202, 356, 1627, 2238, 2262, 3307
NciI	CCSGG	2 cut(s)	352, 2912
NcoI	CCATGG	1 cut(s)	1557
NdeI	CATATG	1 cut(s)	967
NmeAIII	GCCGAG	2 cut(s)	249, 1882
NmuCI	GTSAC	4 cut(s)	79, 2039, 2105, 3107
NsiI	ATGCAT	1 cut(s)	3259
NspI	RCATGY	4 cut(s)	119, 156, 944, 1841
NspV	TTCGAA	3 cut(s)	638, 680, 746
PaeI	GCATGC	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	2871
PciI	ACATGT	1 cut(s)	1837
PctI	GAATGC	3 cut(s)	198, 361, 1187
PfeI	GAWTC	9 cut(s)	140, 475, 542, 635, 904, 1822, 2536, 2884, 3123
PflMI	CCANNNNNTGG	1 cut(s)	1776
PfoI	TCCNGGA	2 cut(s)	2015, 2910
PleI	GAGTC	3 cut(s)	1119, 2273, 3298
PpsI	GAGTC	3 cut(s)	1119, 2273, 3298
PpuMI	RGGWCCY	1 cut(s)	770
PscI	ACATGT	1 cut(s)	1837
PsiI	TTATAA	1 cut(s)	2573
Psp124BI	GAGCTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	5 cut(s)	320, 2015, 2203, 2920, 3114
PspEI	GGTNACC	1 cut(s)	2039
PspGI	CCWGG	5 cut(s)	320, 2015, 2203, 2920, 3114
PspOMI	GGGCCC	2 cut(s)	1779, 2230
PspPI	GGNCC	8 cut(s)	61, 85, 770, 1779, 1780, 2230, 2231, 3118
PspPPI	RGGWCCY	1 cut(s)	770
PspXI	VCTCGAGB	1 cut(s)	2871
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	8 cut(s)	146, 458, 701, 1054, 1118, 1278, 1696, 2190
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	7 cut(s)	1245, 1744, 1971, 3006, 3187, 3203, 3273
RsaNI	GTAC	7 cut(s)	1244, 1743, 1970, 3005, 3186, 3202, 3272
RseI	CAYNNNNRTG	2 cut(s)	1983, 2859
SacI	GAGCTC	1 cut(s)	41
SaqAI	TTAA	7 cut(s)	297, 1481, 1761, 1814, 2135, 2342, 3192
Sau96I	GGNCC	8 cut(s)	61, 85, 770, 1779, 1780, 2230, 2231, 3118
SchI	GAGTC	3 cut(s)	1120, 2273, 3298
ScrFI	CCNGG	7 cut(s)	322, 352, 2017, 2205, 2912, 2922, 3116
SduI	GDGCHC	4 cut(s)	41, 1783, 2234, 2524
SexAI	ACCWGGT	1 cut(s)	2920
SfaNI	GCATC	4 cut(s)	869, 1224, 1443, 2659
SfcI	CTRYAG	2 cut(s)	876, 1702
Sfr274I	CTCGAG	1 cut(s)	2871
SfuI	TTCGAA	3 cut(s)	638, 680, 746
SinI	GGWCC	4 cut(s)	61, 85, 770, 3118
SlaI	CTCGAG	1 cut(s)	2871
SmiMI	CAYNNNNRTG	2 cut(s)	1983, 2859
SmlI	CTYRAG	6 cut(s)	211, 835, 1194, 1963, 2134, 2871
SmoI	CTYRAG	6 cut(s)	211, 835, 1194, 1963, 2134, 2871
SphI	GCATGC	1 cut(s)	156
SsiI	CCGC	9 cut(s)	31, 125, 180, 183, 205, 290, 1096, 2591, 2688
SspI	AATATT	2 cut(s)	664, 1027
SspMI	CTAG	8 cut(s)	27, 270, 708, 720, 927, 1038, 1470, 2456
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	7 cut(s)	320, 350, 2015, 2203, 2910, 2920, 3114
StyI	CCWWGG	5 cut(s)	269, 1469, 1557, 1738, 2242
TaiI	ACGT	4 cut(s)	342, 1129, 1393, 3098
TaqII	GACCGA	1 cut(s)	3135
TatI	WGTACW	2 cut(s)	1243, 3271
TauI	GCSGC	3 cut(s)	33, 127, 183
TfiI	GAWTC	9 cut(s)	140, 475, 542, 635, 904, 1822, 2536, 2884, 3123
Tru1I	TTAA	7 cut(s)	297, 1481, 1761, 1814, 2135, 2342, 3192
Tru9I	TTAA	7 cut(s)	297, 1481, 1761, 1814, 2135, 2342, 3192
TscAI	CASTG	7 cut(s)	1334, 1732, 1795, 2002, 2110, 3091, 3289
TseFI	GTSAC	4 cut(s)	79, 2039, 2105, 3107
TseI	GCWGC	7 cut(s)	170, 202, 347, 728, 731, 1853, 2468
Tsp45I	GTSAC	4 cut(s)	79, 2039, 2105, 3107
TspRI	CASTG	7 cut(s)	1334, 1732, 1795, 2002, 2110, 3091, 3289
Van91I	CCANNNNNTGG	1 cut(s)	1776
Vha464I	CTTAAG	1 cut(s)	2134
VpaK11BI	GGWCC	4 cut(s)	61, 85, 770, 3118
XagI	CCTNNNNNAGG	2 cut(s)	1473, 2241
XapI	RAATTY	6 cut(s)	507, 748, 2003, 2821, 2905, 3351
XceI	RCATGY	4 cut(s)	119, 156, 944, 1841
XcmI	CCANNNNNNNNNTGG	2 cut(s)	784, 2249
XhoI	CTCGAG	1 cut(s)	2871
XmaJI	CCTAGG	2 cut(s)	269, 1469
XspI	CTAG	8 cut(s)	27, 270, 708, 720, 927, 1038, 1470, 2456
Zsp2I	ATGCAT	1 cut(s)	3259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.