Rorug07G0137800
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
10874703 .. 10878155
3453 bp
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UTR
Exon/CDS
Intron
Rorug07G0137800.1

Sequence Viewer

Length: 237 bp
ATGGGTGGAGCCCAGTTGATGAAGCGAATCCCTCGCATCAAATTTCCTCAGAGACATCCAAAGCCCGCTGGTTCTGAATCCCAGAAGACAGCACCTTTGGCTGGAGATTCTGTTCAAGCTTTCTTCTCAAGTTCAAAGGCTTCAACAACTTTGGGAGGAAAAGCTTCTGAACAACCCCCACGAACACCAGTATCCAAAGAAGAGATTGAGGCTATTTTGTTGGGTGGCTGCATCTGA

Protein Analysis

78

Amino Acids

8.21

Weight (kDa)

9.9

Isoelectric Point (pI)

66.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 3 cut(s) 116, 135, 144
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 2 cut(s) 119, 164
AluI AGCT 2 cut(s) 119, 164
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
Asp700I GAANNNNTTC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 215
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 46
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 10
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 13, 188
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 13, 188
BseXI GCAGC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 13
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 13, 188
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 92
BsuI GTATCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 66
CviJI RGCY 8 cut(s) 11, 64, 101, 119, 140, 164, 212, 228
CviKI_1 RGCY 8 cut(s) 11, 64, 101, 119, 140, 164, 212, 228
DdeI CTNAG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 13
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 123
HindIII AAGCTT 2 cut(s) 117, 162
HinfI GANTC 3 cut(s) 27, 77, 107
Hpy188I TCNGA 4 cut(s) 51, 76, 169, 236
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 48
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 26, 54, 87, 95, 201
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 97, 115, 212
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 41
MnlI CCTC 4 cut(s) 42, 57, 149, 202
MroXI GAANNNNTTC 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 27, 77, 107
PkrI GCNGC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 10
SatI GCNGC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 13
SetI ASST 3 cut(s) 97, 121, 166
SfaNI GCATC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 41
SsiI CCGC 1 cut(s) 66
TasI AATT 1 cut(s) 41
TfiI GAWTC 3 cut(s) 27, 77, 107
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 35
XapI RAATTY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.