Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

10865356 .. 10873036

Gene Structure 7681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0137700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3363 bp

ATGACGAACAGCTCTAGGACGACGTTGTCTCGGAAGCAGAGCAAGCACAGTTCAAGCTACTCGGACTCGGAGACGGAGGTAGAAATAGTTGATGAAGATGAAAGAGAAGGGAGGACAAGGAAGGGCAAGAAGTGTAAAGAGGAGAGTTCCGTCAGGGAGTGTGTGAGAGATGAGAAGGATAGTAGGCGATCAACAAGAAGCGAGCATGACAAGGATGGTGCAAGTTATAAAGTTATGGTTGGAGAAGCTGCTGACAGGGATAGTAGGCACAAGGATGCTGCAAGATATAAAGCTAAGTATGAAGAAGATGCTGACAGAGATAGTAGGCACAGGGATAGCAGGTCCAGGGAAGATAGGCACAAGGATGAATATGCCTTAAGAGATCACCACAGTGACAGGTCGGGTAGTAAGCATGCAAATGATGAAAGTTATGCTGTTGAAAGTCGGTATAAGAAATCAAGATATGATGATGGAGAACAGACTAGGTATAATGATGATAGGGGAAGTAGAGGGTGGACCATGATTATAGTACATCCTGAAGTACGACATGTTGATCCAGAAAAGAATAATGGAGGAGACACTGTGTTTCATGATGATAGGAGAAATAGAGCTGATGATATAGAGGACCAAGCCTATTGCATATCCACAAGTACCAAGGAACAACATGTTGATCCTGAAAAGAATGATGGAGGGTACACTAGGTATAAGGATGATAGGGGAAATAGAGCTGATGATAGAGAGGACCAAAACTTTAGCAGATCCCGGAGTACCAAGGAACGACATGTTGATCCAGAAAAGAATGCTGGAGAATTCACTAGGTATAATGATGATAGGGGAAATAGAGCTGATGATAGAGAGGACAGAAGCTATAGTAGATCCCGAAGTACCAAGGAACAACATTTTGATCCAGAAAAGAAAGTCAGTGTCATGGCAGAGTCTATTGCTGATAAGAAAGGGTCTCGTTTACACCATGCTGATGCAGACTTAAATGCAAGCTGTAACAGACAGAGGAATTCACCTAGCTCCCATTCTCATCTTTCAAAAGATCAATCCAGTAAGTGGCATTATATTCAAATGATACTTTTCTTTGTGCCTATTGGTCAAATGAGGCCCTCAATCCAAGCAGAATTGAAGTATGGGGAACCTGAAGAAAGAGTAAGGCAAAATTTCCTTCCCTCAAAGGAGGTTGTAGATGTTTCTGGAGTTCTTGAGCAGCCTTGTTTGTCTAAACGCACCAAGAGACTATTTGACAAGGACGACAGTAGTTTCGGTGACTTATCAGTCGAGAGGGATTTGATTTCTGATGAGTCCAAACCCTCCACTTCTCCTCTGGATCTACCTGATGATTCTAAGTTGACAAGATCTACATGGGACAACTATGAGAGCAAAAAATTTGGAAAGAGTAGTGGTGTCAAGGATACAGGTTCATCTTGTGTTGAAGGAAAGGGAAGTTGGCAGTTGCCTTCCAAGAAACTTCCTGTAGTTCCTGCTTTTCCTATGTATAGTGCAAGACCTGTGATGGATATAAATCACCCTGTATTTTCTCATCATGTCCCTGATGCTGGCAGATACTTCTGCCATGGGCATCAGTCTGAGGCTCCAGCATATGGGACATTTGATTGGAACCACAATACAGAATCAATTGGCGGCCAGCAGTTGGAGACGAGTGAAGATATGTTGAAGGGCTCAACTGGCGGTGTGCATCTTCCTTCAGTCTCTCAGGAAGAGAATCCAGCAGTATATGCAAAAGAAGATGAAACTTGCTTGGGGTTATTAAGGCTGCAAGAGAACCAGAGTGATACTAATTTGGACAAGGGTCAGAAGATTGAAATTGGTCTAGATAGTGATGATTTAGCAAAGGAACCATGTAAACCGTCCAAAAGTATTGCTGAGAAATTACCTAAACTTTCTAAGATACCAAAGGATGATGACGGTCATCTTTGGCTTGTGTATCTCTCCAGGCTTGACATTTCAGCAGAGCTTACTCATCCAGAGCTATACAATAAATGCCTGACTCTAAAGGATGTGGAACAGAATGAAAGTATTGATGAAGATTCTTTGGAGCTTCTCTTTCTGGAGGAAGTTGTAAAAACCCAAGTGGAGCTACCTAAACTTGTGTCAAGTGCTTCTCTTTTTGTTGCCATAGATGATTCTGTTTTTCAGAGAGCGATGTCCTTTTACAAAAAGCAGAGAGAAGAGACGAGGGCCATAACTCATCCCTTATTGATAGATGGACAACAGACATCATTTTATAGTGCACAGAAACTGGATGTTGTTCCAATTTGTGACCGAGAGAATGACGTTGTGCCATTTTCATCTTTTAATGAGCTCAAGCAAGGGCAGTTTTTCCCAGCTGGTTCTGCACTCCACAACAAGGTAGATGAATCAGCTCATGTACTCGGATGGGTCTGCGACTTCCACAATGCATCGCAATCTGCTGCCAGCGGGCCTGGTTATCTGAGTGGGGTCTGCGACTTCCATTCTGCTGGTAGCACTGAGGAAAATAAGTCACTTGATTCTAGGTCTGATCATATAACAGTTTCAAAAGTGTCTAGTGAGGCATTTGAGAATGTGATGTCTCAGTCAATTGAGCCTGGGTCAGTGAGTTTAAGTCGGATACATGATGCTCTTGAAAGTTTGCGCCTTATTCTAGAACTGAAAATCAGCTTCATGGATGATGGTCTTGGGAAGATAAAGGTTATTCCAGATCATTTTAAAGCATCCTCACCCAGTGTTGACTCTTCTCAAAATGATAGGTCCCATAGCTGGAGTCTAGGAAAATTAAGAACTGCTGCACACATGTTGAAGTCGTTTAGTCTAAGGGGGTTGCCATGGGGTTCTAGCACGGATGGTGAAGAAAAGGTTGAGCTATCTGCTGTAGAACTAGAATCACTTCGAACGGAGCTTGCTGATATAGAAGAGAGGGAAGCTCACTTGAAAGCTCAATTGGAACACGTTGATGAGATTTTACGATTTGCTCGTCTCTCTGGCTATTTGTACATTCGAACTAGGTGGACAGCACTACCAGGAGAACCTCCTCCCCTTGATGATACTGATGTTGATGACTGGCTTCCACGCTTTGTTGTCTTGCAAGGGACCTGCATGTTCTTCTACTTGTTATCCACAGATCTAAGTCCTCAAGACTCCACCCTATTATCTGATATTGTTGAAATAGGTGCCTTGCCAAGCTTTACACGAGATGATGAAGGAACTCGATATGCATTTTATATTTTAACACGTCAAGGACTGCGGTACGAGTGCTCTAGTGTTTCTGAGATACAGTTGAATTCCTGGTTGGCGGCATTACGAACTGACTGCAAATTGGAAAAGTCTGATGCCACAATACCAAATGGCTCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1120

Amino Acids

126.69

Weight (kDa)

5.39

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AasI	GACNNNNNNGTC	2 cut(s)	25, 1280
Acc36I	ACCTGC	2 cut(s)	330, 3107
AccB1I	GGYRCC	1 cut(s)	3176
AccB7I	CCANNNNNTGG	3 cut(s)	1059, 1607, 1657
AciI	CCGC	5 cut(s)	1647, 1695, 2445, 3250, 3299
AclWI	GGATC	7 cut(s)	548, 665, 753, 782, 870, 899, 1341
AcoI	YGGCCR	1 cut(s)	1648
AcsI	RAATTY	5 cut(s)	809, 1012, 1165, 1391, 3286
AcuI	CTGAAG	3 cut(s)	558, 1167, 1695
AdeI	CACNNNGTG	1 cut(s)	2732
AfaI	GTAC	9 cut(s)	531, 543, 652, 695, 769, 886, 2397, 2999, 3254
AfiI	CCNNNNNNNGG	6 cut(s)	1059, 1562, 1607, 1657, 2374, 2766
AflII	CTTAAG	1 cut(s)	376
AflIII	ACRYGT	6 cut(s)	547, 664, 781, 2799, 2953, 3236
AjiI	CACGTC	1 cut(s)	3239
AjnI	CCWGG	6 cut(s)	344, 1958, 2449, 2593, 3025, 3290
AjuI	GAANNNNNNNTTGG	6 cut(s)	1435, 1467, 2930, 2962, 3278, 3310
AleI	CACNNNNGTG	1 cut(s)	390
Alw21I	GWGCWC	3 cut(s)	2260, 2331, 3263
Alw44I	GTGCAC	1 cut(s)	2256
AlwI	GGATC	7 cut(s)	548, 665, 753, 782, 870, 899, 1341
AlwNI	CAGNNNCTG	1 cut(s)	2266
AoxI	GGCC	4 cut(s)	1109, 1648, 2205, 2447
ApaLI	GTGCAC	1 cut(s)	2256
ApeKI	GCWGC	6 cut(s)	248, 278, 1213, 1780, 2438, 2792
ApoI	RAATTY	5 cut(s)	809, 1012, 1165, 1391, 3286
ArsI	GACNNNNNNTTYG	2 cut(s)	1250, 1282
Asp700I	GAANNNNTTC	1 cut(s)	2892
AspLEI	GCGC	1 cut(s)	2643
AspS9I	GGNCC	9 cut(s)	342, 516, 625, 742, 1110, 2205, 2447, 2757, 3096
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	6 cut(s)	377, 1008, 1283, 1523, 2718, 2864
AsuII	TTCGAA	2 cut(s)	2896, 3004
AvaII	GGWCC	6 cut(s)	342, 516, 625, 742, 2757, 3096
BaeGI	GKGCMC	1 cut(s)	2260
BaeI	ACNNNNGTAYC	2 cut(s)	3042, 3075
BanI	GGYRCC	1 cut(s)	3176
BanII	GRGCYC	2 cut(s)	1688, 2331
BauI	CACGAG	1 cut(s)	3195
Bbv12I	GWGCWC	3 cut(s)	2260, 2331, 3263
BbvI	GCAGC	6 cut(s)	235, 265, 1225, 1767, 2425, 2779
BccI	CCATC	8 cut(s)	209, 464, 680, 1513, 2225, 2397, 2672, 2843
BcgI	CGANNNNNNTGC	2 cut(s)	3297, 3331
BciT130I	CCWGG	6 cut(s)	346, 1960, 2451, 2595, 3027, 3292
BciVI	GTATCC	2 cut(s)	1411, 2610
BclI	TGATCA	1 cut(s)	2527
BcnI	CCSGG	1 cut(s)	763
BfmI	CTRYAG	3 cut(s)	868, 1479, 2877
BfrI	CTTAAG	1 cut(s)	376
BfuAI	ACCTGC	2 cut(s)	330, 3107
BfuI	GTATCC	2 cut(s)	1411, 2610
BglII	AGATCT	2 cut(s)	1361, 3127
BisI	GCNGC	8 cut(s)	249, 279, 1214, 1648, 1781, 2439, 2793, 3300
BlsI	GCNGC	8 cut(s)	250, 280, 1215, 1649, 1782, 2440, 2794, 3301
Bme1390I	CCNGG	7 cut(s)	346, 763, 1960, 2451, 2595, 3027, 3292
Bme18I	GGWCC	6 cut(s)	342, 516, 625, 742, 2757, 3096
BmgBI	CACGTC	1 cut(s)	3239
BmgT120I	GGNCC	9 cut(s)	342, 516, 625, 742, 1110, 2205, 2447, 2757, 3096
BmiI	GGNNCC	7 cut(s)	1143, 1599, 1625, 1863, 2759, 3097, 3178
BmrFI	CCNGG	7 cut(s)	346, 763, 1960, 2451, 2595, 3027, 3292
BmrI	ACTGGG	1 cut(s)	2724
BmuI	ACTGGG	1 cut(s)	2724
BoxI	GACNNNNGTC	1 cut(s)	1815
BplI	GAGNNNNNCTC	2 cut(s)	2914, 2946
BpmI	CTGGAG	6 cut(s)	825, 1221, 1584, 1942, 2096, 2788
Bpu14I	TTCGAA	2 cut(s)	2896, 3004
BpuEI	CTTGAG	3 cut(s)	1229, 2315, 3123
BpuMI	CCSGG	1 cut(s)	763
BsaBI	GATNNNNATC	1 cut(s)	1527
BsaI	GGTCTC	1 cut(s)	963
BsaJI	CCNNGG	7 cut(s)	345, 654, 771, 888, 1579, 2594, 2831
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	6 cut(s)	1059, 1562, 1607, 1657, 2374, 2766
Bse1I	ACTGG	5 cut(s)	1053, 1696, 2271, 2730, 3071
Bse8I	GATNNNNATC	1 cut(s)	1527
BseBI	CCWGG	6 cut(s)	346, 1960, 2451, 2595, 3027, 3292
BseDI	CCNNGG	7 cut(s)	345, 654, 771, 888, 1579, 2594, 2831
BseJI	GATNNNNATC	1 cut(s)	1527
BseLI	CCNNNNNNNGG	6 cut(s)	1059, 1562, 1607, 1657, 2374, 2766
BseMII	CTCAG	7 cut(s)	1584, 1733, 1881, 2450, 2487, 2594, 3264
BseNI	ACTGG	5 cut(s)	1053, 1696, 2271, 2730, 3071
BseRI	GAGGAG	4 cut(s)	155, 588, 1317, 3027
BseSI	GKGCMC	1 cut(s)	2260
BseXI	GCAGC	6 cut(s)	235, 265, 1225, 1767, 2425, 2779
BseYI	CCCAGC	1 cut(s)	2350
BsgI	GTGCAG	2 cut(s)	2346, 2778
BshFI	GGCC	4 cut(s)	1111, 1650, 2207, 2449
BshNI	GGYRCC	1 cut(s)	3176
BsiHKAI	GWGCWC	3 cut(s)	2260, 2331, 3263
BsiSI	CCGG	1 cut(s)	763
BslFI	GGGAC	5 cut(s)	1385, 1538, 1624, 2743, 3109
BslI	CCNNNNNNNGG	6 cut(s)	1059, 1562, 1607, 1657, 2374, 2766
BsmBI	CGTCTC	4 cut(s)	65, 1655, 2192, 2987
BsmFI	GGGAC	5 cut(s)	1385, 1538, 1624, 2743, 3109
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	4 cut(s)	1111, 1650, 2207, 2449
Bso31I	GGTCTC	1 cut(s)	963
Bsp119I	TTCGAA	2 cut(s)	2896, 3004
Bsp1286I	GDGCHC	4 cut(s)	1688, 2260, 2331, 3263
Bsp1407I	TGTACA	1 cut(s)	2997
Bsp19I	CCATGG	2 cut(s)	1579, 2831
BspACI	CCGC	5 cut(s)	1647, 1695, 2445, 3250, 3299
BspANI	GGCC	4 cut(s)	1111, 1650, 2207, 2449
BspCNI	CTCAG	7 cut(s)	1585, 1732, 1882, 2451, 2488, 2593, 3265
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	7 cut(s)	1143, 1599, 1625, 1863, 2759, 3097, 3178
BspMI	ACCTGC	2 cut(s)	330, 3107
BspPI	GGATC	7 cut(s)	548, 665, 753, 782, 870, 899, 1341
BspT104I	TTCGAA	2 cut(s)	2896, 3004
BspT107I	GGYRCC	1 cut(s)	3176
BspTI	CTTAAG	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	963
BsrGI	TGTACA	1 cut(s)	2997
BsrI	ACTGG	5 cut(s)	1053, 1696, 2271, 2730, 3071
BssECI	CCNNGG	7 cut(s)	345, 654, 771, 888, 1579, 2594, 2831
BssSI	CACGAG	1 cut(s)	3195
BssT1I	CCWWGG	5 cut(s)	654, 771, 888, 1579, 2831
Bst2BI	CACGAG	1 cut(s)	3195
Bst2UI	CCWGG	6 cut(s)	346, 1960, 2451, 2595, 3027, 3292
Bst4CI	ACNGT	8 cut(s)	50, 392, 583, 1262, 1875, 1934, 2539, 3282
Bst6I	CTCTTC	4 cut(s)	1719, 2190, 2746, 2913
BstAFI	CTTAAG	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	1742
BstAUI	TGTACA	1 cut(s)	2997
BstBI	TTCGAA	2 cut(s)	2896, 3004
BstC8I	GCNNGC	9 cut(s)	44, 203, 414, 994, 1564, 1652, 2443, 2447, 2907
BstDSI	CCRYGG	2 cut(s)	1579, 2831
BstHHI	GCGC	1 cut(s)	2643
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 1692, 1742, 2360
BstNI	CCWGG	6 cut(s)	346, 1960, 2451, 2595, 3027, 3292
BstNSI	RCATGY	6 cut(s)	416, 551, 668, 785, 2803, 3106
BstPAI	GACNNNNGTC	1 cut(s)	1815
BstSCI	CCNGG	7 cut(s)	344, 761, 1958, 2449, 2593, 3025, 3290
BstSFI	CTRYAG	3 cut(s)	868, 1479, 2877
BstSLI	GKGCMC	1 cut(s)	2260
BstV1I	GCAGC	6 cut(s)	235, 265, 1225, 1767, 2425, 2779
BstX2I	RGATCY	5 cut(s)	758, 875, 1333, 1361, 3127
BstXI	CCANNNNNNTGG	1 cut(s)	2486
BstYI	RGATCY	5 cut(s)	758, 875, 1333, 1361, 3127
BsuI	GTATCC	2 cut(s)	1411, 2610
BsuRI	GGCC	4 cut(s)	1111, 1650, 2207, 2449
BtgI	CCRYGG	2 cut(s)	1579, 2831
BtgZI	GCGATG	2 cut(s)	2183, 2412
BtrI	CACGTC	1 cut(s)	3239
BtsIMutI	CAGTG	6 cut(s)	397, 579, 928, 2493, 2607, 2737
BveI	ACCTGC	2 cut(s)	330, 3107
Cac8I	GCNNGC	9 cut(s)	44, 203, 414, 994, 1564, 1652, 2443, 2447, 2907
CaiI	CAGNNNCTG	1 cut(s)	2266
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	2643
Cfr13I	GGNCC	9 cut(s)	342, 516, 625, 742, 1110, 2205, 2447, 2757, 3096
Csp6I	GTAC	9 cut(s)	530, 542, 651, 694, 768, 885, 2396, 2998, 3253
CviQI	GTAC	9 cut(s)	530, 542, 651, 694, 768, 885, 2396, 2998, 3253
DraI	TTTAAA	1 cut(s)	2716
DraIII	CACNNNGTG	1 cut(s)	2732
DrdI	GACNNNNNNGTC	2 cut(s)	25, 1280
DseDI	GACNNNNNNGTC	2 cut(s)	25, 1280
EaeI	YGGCCR	1 cut(s)	1648
Eam1104I	CTCTTC	4 cut(s)	1719, 2190, 2746, 2913
EarI	CTCTTC	4 cut(s)	1719, 2190, 2746, 2913
Ecl136II	GAGCTC	1 cut(s)	2329
Eco130I	CCWWGG	5 cut(s)	654, 771, 888, 1579, 2831
Eco24I	GRGCYC	2 cut(s)	1688, 2331
Eco31I	GGTCTC	1 cut(s)	963
Eco47I	GGWCC	6 cut(s)	342, 516, 625, 742, 2757, 3096
Eco53kI	GAGCTC	1 cut(s)	2329
Eco57I	CTGAAG	3 cut(s)	558, 1167, 1695
EcoICRI	GAGCTC	1 cut(s)	2329
EcoO109I	RGGNCCY	3 cut(s)	1110, 2757, 3096
EcoRI	GAATTC	3 cut(s)	809, 1012, 3286
EcoRII	CCWGG	6 cut(s)	344, 1958, 2449, 2593, 3025, 3290
EcoT14I	CCWWGG	5 cut(s)	654, 771, 888, 1579, 2831
EcoT22I	ATGCAT	2 cut(s)	2428, 3223
EcoT38I	GRGCYC	2 cut(s)	1688, 2331
ErhI	CCWWGG	5 cut(s)	654, 771, 888, 1579, 2831
Esp3I	CGTCTC	4 cut(s)	65, 1655, 2192, 2987
FaqI	GGGAC	5 cut(s)	1385, 1538, 1624, 2743, 3109
FauI	CCCGC	1 cut(s)	2438
FauNDI	CATATG	1 cut(s)	1606
FbaI	TGATCA	1 cut(s)	2527
Fnu4HI	GCNGC	8 cut(s)	249, 279, 1214, 1648, 1781, 2439, 2793, 3300
FriOI	GRGCYC	2 cut(s)	1688, 2331
Fsp4HI	GCNGC	8 cut(s)	249, 279, 1214, 1648, 1781, 2439, 2793, 3300
GlaI	GCGC	1 cut(s)	2642
GluI	GCNGC	8 cut(s)	249, 279, 1214, 1648, 1781, 2439, 2793, 3300
GsaI	CCCAGC	1 cut(s)	2354
GsuI	CTGGAG	6 cut(s)	825, 1221, 1584, 1942, 2096, 2788
HaeIII	GGCC	4 cut(s)	1111, 1650, 2207, 2449
HapII	CCGG	1 cut(s)	763
HhaI	GCGC	1 cut(s)	2643
Hin6I	GCGC	1 cut(s)	2641
HinP1I	GCGC	1 cut(s)	2641
HincII	GTYRAC	2 cut(s)	1356, 2737
HindII	GTYRAC	2 cut(s)	1356, 2737
HindIII	AAGCTT	1 cut(s)	3187
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	6 cut(s)	377, 1008, 1283, 1523, 2718, 2864
Hpy166II	GTNNAC	8 cut(s)	516, 696, 965, 1356, 1871, 2258, 2737, 3015
Hpy8I	GTNNAC	8 cut(s)	516, 696, 965, 1356, 1871, 2258, 2737, 3015
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	9 cut(s)	101, 115, 169, 1181, 1433, 1473, 1675, 1719, 3200
HpyCH4III	ACNGT	8 cut(s)	50, 392, 583, 1262, 1875, 1934, 2539, 3282
HpyCH4IV	ACGT	4 cut(s)	23, 2301, 2955, 3238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 1692, 1742, 2360
HpySE526I	ACGT	4 cut(s)	23, 2301, 2955, 3238
HspAI	GCGC	1 cut(s)	2641
Ksp22I	TGATCA	1 cut(s)	2527
LmnI	GCTCC	5 cut(s)	1028, 1603, 2062, 2101, 2902
Lsp1109I	GCAGC	6 cut(s)	235, 265, 1225, 1767, 2425, 2779
MaeII	ACGT	4 cut(s)	23, 2301, 2955, 3238
MaeIII	GTNAC	5 cut(s)	392, 998, 1271, 2285, 2508
MfeI	CAATTG	3 cut(s)	1641, 2586, 2945
MflI	RGATCY	5 cut(s)	758, 875, 1333, 1361, 3127
MhlI	GDGCHC	4 cut(s)	1688, 2260, 2331, 3263
MlyI	GAGTC	7 cut(s)	59, 944, 1316, 2008, 2732, 2779, 3137
MmeI	TCCRAC	3 cut(s)	220, 1638, 2594
Mph1103I	ATGCAT	2 cut(s)	2428, 3223
MroXI	GAANNNNTTC	1 cut(s)	2892
MseI	TTAA	8 cut(s)	377, 986, 1775, 2322, 2609, 2715, 2783, 3233
MslI	CAYNNNNRTG	6 cut(s)	273, 363, 390, 417, 975, 2958
MspA1I	CMGCKG	2 cut(s)	2354, 2445
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	7 cut(s)	346, 763, 1960, 2451, 2595, 3027, 3292
MunI	CAATTG	3 cut(s)	1641, 2586, 2945
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	6 cut(s)	346, 1960, 2451, 2595, 3027, 3292
MwoI	GCNNNNNNNGC	4 cut(s)	43, 1692, 1742, 2360
NciI	CCSGG	1 cut(s)	763
NcoI	CCATGG	2 cut(s)	1579, 2831
NdeI	CATATG	1 cut(s)	1606
NlaIV	GGNNCC	7 cut(s)	1143, 1599, 1625, 1863, 2759, 3097, 3178
NmuCI	GTSAC	4 cut(s)	392, 1271, 2285, 2508
NsiI	ATGCAT	2 cut(s)	2428, 3223
NspI	RCATGY	6 cut(s)	416, 551, 668, 785, 2803, 3106
NspV	TTCGAA	2 cut(s)	2896, 3004
OliI	CACNNNNGTG	1 cut(s)	390
PaeI	GCATGC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	589
PciI	ACATGT	4 cut(s)	547, 664, 781, 2799
PcsI	WCGNNNNNNNCGW	1 cut(s)	2977
PctI	GAATGC	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	2892
PfeI	GAWTC	8 cut(s)	1346, 1637, 1729, 2054, 2150, 2384, 2516, 2888
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	3 cut(s)	1059, 1607, 1657
PfoI	TCCNGGA	1 cut(s)	761
PkrI	GCNGC	8 cut(s)	250, 280, 1215, 1649, 1782, 2440, 2794, 3301
PleI	GAGTC	7 cut(s)	59, 943, 1315, 2008, 2732, 2778, 3137
PpsI	GAGTC	7 cut(s)	59, 943, 1315, 2008, 2732, 2778, 3137
PpuMI	RGGWCCY	2 cut(s)	2757, 3096
PscI	ACATGT	4 cut(s)	547, 664, 781, 2799
PshAI	GACNNNNGTC	1 cut(s)	1815
PsiI	TTATAA	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	2331
Psp5II	RGGWCCY	2 cut(s)	2757, 3096
Psp6I	CCWGG	6 cut(s)	344, 1958, 2449, 2593, 3025, 3290
PspFI	CCCAGC	1 cut(s)	2350
PspGI	CCWGG	6 cut(s)	344, 1958, 2449, 2593, 3025, 3290
PspN4I	GGNNCC	7 cut(s)	1143, 1599, 1625, 1863, 2759, 3097, 3178
PspPI	GGNCC	9 cut(s)	342, 516, 625, 742, 1110, 2205, 2447, 2757, 3096
PspPPI	RGGWCCY	2 cut(s)	2757, 3096
PstNI	CAGNNNCTG	1 cut(s)	2266
PsuI	RGATCY	5 cut(s)	758, 875, 1333, 1361, 3127
PsyI	GACNNNGTC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	2354
RsaI	GTAC	9 cut(s)	531, 543, 652, 695, 769, 886, 2397, 2999, 3254
RsaNI	GTAC	9 cut(s)	530, 542, 651, 694, 768, 885, 2396, 2998, 3253
RseI	CAYNNNNRTG	6 cut(s)	273, 363, 390, 417, 975, 2958
SacI	GAGCTC	1 cut(s)	2331
SaqAI	TTAA	8 cut(s)	377, 986, 1775, 2322, 2609, 2715, 2783, 3233
SatI	GCNGC	8 cut(s)	249, 279, 1214, 1648, 1781, 2439, 2793, 3300
Sau96I	GGNCC	9 cut(s)	342, 516, 625, 742, 1110, 2205, 2447, 2757, 3096
SchI	GAGTC	7 cut(s)	59, 944, 1316, 2008, 2732, 2779, 3137
ScrFI	CCNGG	7 cut(s)	346, 763, 1960, 2451, 2595, 3027, 3292
SduI	GDGCHC	4 cut(s)	1688, 2260, 2331, 3263
SfcI	CTRYAG	3 cut(s)	868, 1479, 2877
SfuI	TTCGAA	2 cut(s)	2896, 3004
SinI	GGWCC	6 cut(s)	342, 516, 625, 742, 2757, 3096
SmiMI	CAYNNNNRTG	6 cut(s)	273, 363, 390, 417, 975, 2958
SmlI	CTYRAG	4 cut(s)	376, 1208, 2330, 3138
SmoI	CTYRAG	4 cut(s)	376, 1208, 2330, 3138
SphI	GCATGC	1 cut(s)	416
SsiI	CCGC	5 cut(s)	1647, 1695, 2445, 3250, 3299
SstI	GAGCTC	1 cut(s)	2331
StyD4I	CCNGG	7 cut(s)	344, 761, 1958, 2449, 2593, 3025, 3290
StyI	CCWWGG	5 cut(s)	654, 771, 888, 1579, 2831
TaaI	ACNGT	8 cut(s)	50, 392, 583, 1262, 1875, 1934, 2539, 3282
TaiI	ACGT	4 cut(s)	26, 2304, 2958, 3241
TaqI	TCGA	4 cut(s)	1284, 2896, 3004, 3214
TaqII	GACCGA	1 cut(s)	2304
TatI	WGTACW	3 cut(s)	529, 2395, 2997
TauI	GCSGC	2 cut(s)	1650, 3302
TfiI	GAWTC	8 cut(s)	1346, 1637, 1729, 2054, 2150, 2384, 2516, 2888
Tru1I	TTAA	8 cut(s)	377, 986, 1775, 2322, 2609, 2715, 2783, 3233
Tru9I	TTAA	8 cut(s)	377, 986, 1775, 2322, 2609, 2715, 2783, 3233
TscAI	CASTG	6 cut(s)	397, 586, 928, 2500, 2607, 2737
TseFI	GTSAC	4 cut(s)	392, 1271, 2285, 2508
TseI	GCWGC	6 cut(s)	248, 278, 1213, 1780, 2438, 2792
Tsp45I	GTSAC	4 cut(s)	392, 1271, 2285, 2508
TspGWI	ACGGA	4 cut(s)	89, 139, 2861, 2915
TspRI	CASTG	6 cut(s)	397, 586, 928, 2500, 2607, 2737
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	3 cut(s)	1059, 1607, 1657
Vha464I	CTTAAG	1 cut(s)	376
VneI	GTGCAC	1 cut(s)	2256
VpaK11BI	GGWCC	6 cut(s)	342, 516, 625, 742, 2757, 3096
XapI	RAATTY	5 cut(s)	809, 1012, 1165, 1391, 3286
XbaI	TCTAGA	2 cut(s)	1837, 2650
XceI	RCATGY	6 cut(s)	416, 551, 668, 785, 2803, 3106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1327
XmnI	GAANNNNTTC	1 cut(s)	2892
Zsp2I	ATGCAT	2 cut(s)	2428, 3223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.