Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

2851994 .. 2868917

Gene Structure 16924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1022700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3384 bp

ATGGCATTGTCGGTGCTCGTGGAAAATGTGGCTTGTGAGGAGGAAGCAGTGCCACTGAACTCGCACGACCACGACGACCCACGACTACGGCGCAAGATTCAGCAGCGGCGGCCCGAGTGCGTGAGAAGGTCGCCGAGACTGTCGCCGTTGCCGCCGGCGCAGAAGGAGGAGGTCGTCAAGGATACTTCGGCAAATGCAGCTTCCAGGAAGATCGACGACGCCAAGCGTGCGAGTGTGAGAAGGTCTCCCAGATTTACGTCATCCGTCCTGGAAGAAGCTGAGAGCAGCAAGATTAAGACTCCATCAGTTCAGCATAAAAGGTACAAGGGTGGAACCATCGGATCAAATGATGATGAACAGAAATATACAGTATCAAGTGTAGAAAGCTTAGCAGAGAAGTCTATGAGGAGATCTCTAAGGTTGATGAATCAGTCTGCAGTGGAAAGCTGCTGTCTGAAAGTTTCTTCGCAAGAGAGATCTCTAAGAAAATTCGAATCCCCTGAAGAAGGCTGCCCCAAGGCCCTGTCATTAAATACTTCTAATGTCGAAACATCATCAAGAGACACAGAAGTCAAGCATCCATCTCTTTCATGGCACGGAGAGAGTGATAAGAGACCTACACCCTTGAGGAGGTCTTCAAGGTTAATGTCAGCTCCTGAAGACAATTTTGATGGTGAAAAGTTGGATGAAAAGCACATAAGAAGATCTCCTAAGTTTTCCCCTTGTTTGGACGTGGCTAAGGAAACTTCCAATCTAAATTCTAGTTTCATTGGATTGTCTGATTCGGAAGATGGGTTTTCTTCCAAGAAGATATTGATCTCATTAGGAAAATCTGATTCAAAAATTTTTGACGAGACACACTTGGGGCAATCCCAAAGAAGAACCAGATCGATGTTTGAGGCTGAAAGAAGAGAATCAGAATGTGCTTTGATTGAATTGCCCGAGACCTATGTGAAACAAACACCAAAGAAAAGGAAAACCTTAGATTCATCAAAGAACAAGCAAAACAAACAAGAGAACATCAAAAGTGCTTCTTTCATTGGAGATCCAATTCCTGATGTTGAAGCTCAAGAAAGATGGGGTTGGCGGTATCGAATGAAGAGTCAAAGATCTAAAAGACAAAGCTTGAAGCTAAATGAAGATGAAGAAGATGAGATAATTTTGGACGTTGAATGTCACTTTTCTCAAGCTAAAATTGGCGATTGCATCTTCGATCTTGGAGATTGTGCTTACATAGAGGGTGATGAAGGACAAAAGCATGTGGGAAGGATCATAGAATTTTTCAAGACAGCTGATGGAGAAAAATATTTTAGAGTCCAGTGGTTTTATAAAGTTGAAGATACGGTTATTAAAGAAGTAGGAACTTCTCATGACAAGAGGCGTTTATTCTATTCTACCGTAATGAACGATAATTTGATAGATTGCATTATTTCAAAAGTCAATGTTACACATATATCCCCTAAGGTAGGGTTAAAAGTGAACTCCATTTCGCCGTCTGACTTCTACTATGATATGGAATACTGTGTGGACTATTCCACATTTCGCTCCTTCATCTCTGATAATTCTGTGAAGAGCCACAACATGCCATCATGCAATTCAATCCAAGCAGTTGGTACACTGTCAACTTCAAACTTACTGGAGAATATGCCCAGCTCTGAAACTTACAAAGCAGAATTAGCCCTCTTAGATCTTTTTTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCTTTGGTGCTAAACTTTCCTGTGTTAATCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTGAAGTTAAATCATCCAGAAACGCAAGTCAGGAATGAAACTGCTGAGGATTTTCTACAACTGTTGAAGGAATGGGAAAAGTTATGCAGAAGGCATAAGGCCAATGATGTCGAAAGAACTCATCCATTAAGATCGAAGACCTTAAGTGTACCAAAGAATGGTAATGAGGTTGGTACCGGTGAATATGAAGTTTCGAGGATTGTTGATATCTGCTTTGGTGATCCTAATAAGACAGGCAAGCGTGGAGTGAACCTTAAGGTGCATTGGAAAGGTTATGGTAGCAGTGAAGATACATGGGAACCAATTGAAGGCTTAAGTAACTGCCAAGAAAGTATACAGGATTTTGTAAGAAATGGGAGGAAAGTGAAAATTTTGCCACTTCCAGGAGATGTTGATGTAATTTGCGGGGGCCCTCCTTGCCAAGGAATTAGCGGCTATAATCGCTATAGAAACGTTGATTCTCCATTGGATGATGAGAGGAATCATCAAATTGTAGTCTTCATGGATATTGTAAACTTCTTGAAGCCAAAGTTTGTGCTGATGGAAAATGTTGTTGACATTTTGAGATTTGACAAAGCTTCTCTTGGAAGATATGCACTTAGTCGTTTGGTGCATATGAAGTACCAAGCGAGGCTGGGAATACTTGCTGCCGGTTGTTATGGCCTTCCACAATTTCGGTTGCGTGTTTTCTTGTGGGGTGCTCATGCTTGTGAGAATCTGCCACAGTTTCCTCTTCCAACACATGATGTCATAGTGAGATACTGGCCTCCACCAGAGTTTGAGCGGAACACTGTTGCTTATGATGAAGAACAACCTCGTGAATTATTAGAAAAAGCTCTTGTTCTTCGCGATGCCATCTCGGATCTTCCTTCTGTCTCAAACAATGAAAAAAGAGAAGAAATGCCATTCCAAAAGCCTCCTGAAACAGATTTCCAAAGATATATAAGGTCAACACAGCATGAGATGATGGGATCTGCGTTTGATGGCACTACGAAAGCAACAGTTTCACTATATGACCATCGGACTTACCACTTATACGAAGATGATTACTTACGAATTTGTCAGATTCCAAAAAGAAAGGGAGCAAATTTCCGGGATCTACCTGGTGTTGTTGTTGGAAGTGACAATGTGGCTCGGAGAGAGTCAACTGAAAAGCATTCTCTGTTGCCATCTGGAAGGCCATTAGTACCAGACTATTGCTTTACTTATGAACAAGGCAAATCGAAAAGACCGTTTGCGAGGTTATGGTGGGATGAGACAGTGCCCACTGTGCTTACTTTCCCAAGTTGTCACAACCAGGTAGTATTACATCCGGAGCAGGACCGAATTCTCACTGTACGTGAATCTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGGACAGTTAAAGAGAGGTATTGTCAGATTGGAAATGCAGTTCCAGTTTCGGTTGCACGAGCTTTAGGATATGCGTTGGGATTGGCAGTTCGAAAACTCAGTGGAAATGATCCACTCATGACTCTCCCCAATAAGTTTTCTCATTCAAACTTCTTCCAATTCACAAAAAATTTGCCTCTCGAGACCGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1128

Amino Acids

128.25

Weight (kDa)

7.66

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	406 - 515	2.2e-16	BAH domain
Chromo	PF00385	663 - 717	1.2e-11	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	721 - 1088	1.5e-36	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1329
AasI	GACNNNNNNGTC	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	1976
AccB1I	GGYRCC	1 cut(s)	1976
AccB7I	CCANNNNNTGG	1 cut(s)	1961
AccBSI	CCGCTC	1 cut(s)	2587
AccI	GTMKAC	1 cut(s)	2137
AccII	CGCG	1 cut(s)	2652
AccIII	TCCGGA	1 cut(s)	3115
AciI	CCGC	7 cut(s)	106, 109, 152, 1087, 2208, 2235, 2587
AclI	AACGTT	1 cut(s)	2256
AclWI	GGATC	8 cut(s)	349, 1040, 1277, 2018, 2673, 2782, 2907, 3293
AcsI	RAATTY	9 cut(s)	488, 757, 843, 1277, 2172, 2859, 2890, 3129, 3358
AcuI	CTGAAG	2 cut(s)	522, 678
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	7 cut(s)	323, 1615, 1953, 1978, 2426, 2991, 3141
AfiI	CCNNNNNNNGG	8 cut(s)	506, 630, 727, 1466, 1961, 2111, 2186, 2225
AflII	CTTAAG	3 cut(s)	1945, 2057, 2116
AgeI	ACCGGT	1 cut(s)	1979
AjiI	CACGTC	1 cut(s)	733
AjnI	CCWGG	5 cut(s)	203, 267, 2185, 2905, 3099
AloI	GAACNNNNNNTCC	4 cut(s)	3213, 3245, 3261, 3293
Alw21I	GWGCWC	2 cut(s)	18, 2506
Alw26I	GTCTC	9 cut(s)	130, 249, 555, 607, 848, 938, 2683, 3053, 3365
AlwI	GGATC	8 cut(s)	349, 1040, 1277, 2018, 2673, 2782, 2907, 3293
AlwNI	CAGNNNCTG	1 cut(s)	656
Ama87I	CYCGRG	3 cut(s)	113, 941, 3368
Aor13HI	TCCGGA	1 cut(s)	3115
AoxI	GGCC	8 cut(s)	110, 519, 1770, 1902, 2212, 2464, 2567, 2981
ApaI	GGGCCC	2 cut(s)	1774, 2216
ApeKI	GCWGC	6 cut(s)	103, 197, 285, 447, 510, 2450
ApoI	RAATTY	9 cut(s)	488, 757, 843, 1277, 2172, 2859, 2890, 3129, 3358
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
AsiGI	ACCGGT	1 cut(s)	1979
Asp718I	GGTACC	1 cut(s)	1976
AspLEI	GCGC	2 cut(s)	93, 160
AspS9I	GGNCC	7 cut(s)	111, 520, 1770, 1771, 2212, 2213, 3124
AsuC2I	CCSGG	1 cut(s)	2897
AsuHPI	GGTGA	4 cut(s)	686, 1253, 1994, 2033
AsuII	TTCGAA	2 cut(s)	492, 3280
AvaI	CYCGRG	3 cut(s)	113, 941, 3368
AvaII	GGWCC	1 cut(s)	3124
AxyI	CCTNAGG	1 cut(s)	1461
BaeGI	GKGCMC	3 cut(s)	1774, 2216, 3069
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BanI	GGYRCC	1 cut(s)	1976
BanII	GRGCYC	2 cut(s)	1774, 2216
BauI	CACGAG	3 cut(s)	17, 2619, 3246
BbsI	GAAGAC	4 cut(s)	627, 666, 1946, 2293
Bbv12I	GWGCWC	2 cut(s)	18, 2506
BbvCI	CCTCAGC	1 cut(s)	1848
BbvI	GCAGC	6 cut(s)	115, 209, 297, 434, 497, 2437
BceAI	ACGGC	3 cut(s)	104, 130, 1477
BciT130I	CCWGG	5 cut(s)	205, 269, 2187, 2907, 3101
BciVI	GTATCC	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	2897
BcoDI	GTCTC	9 cut(s)	130, 249, 555, 607, 848, 938, 2683, 3053, 3365
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	2 cut(s)	435, 2248
BfrI	CTTAAG	3 cut(s)	1945, 2057, 2116
BfuI	GTATCC	1 cut(s)	175
BglII	AGATCT	5 cut(s)	410, 476, 704, 1109, 1687
BlpI	GCTNAGC	1 cut(s)	388
Bme1390I	CCNGG	6 cut(s)	205, 269, 2187, 2897, 2907, 3101
Bme18I	GGWCC	1 cut(s)	3124
BmeT110I	CYCGRG	3 cut(s)	113, 941, 3368
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	7 cut(s)	111, 520, 1770, 1771, 2212, 2213, 3124
BmiI	GGNNCC	6 cut(s)	334, 1772, 1978, 2103, 2213, 2214
BmrFI	CCNGG	6 cut(s)	205, 269, 2187, 2897, 2907, 3101
BmsI	GCATC	3 cut(s)	586, 1215, 2644
BpiI	GAAGAC	4 cut(s)	627, 666, 1946, 2293
BplI	GAGNNNNNCTC	4 cut(s)	229, 261, 397, 429
BpmI	CTGGAG	1 cut(s)	1658
Bpu10I	CCTNAGC	2 cut(s)	738, 1848
Bpu1102I	GCTNAGC	1 cut(s)	388
Bpu14I	TTCGAA	2 cut(s)	492, 3280
BpuEI	CTTGAG	3 cut(s)	646, 1053, 1170
BpuMI	CCSGG	1 cut(s)	2897
Bsa29I	ATCGAT	1 cut(s)	890
BsaAI	YACGTR	1 cut(s)	3143
BsaBI	GATNNNNATC	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	4 cut(s)	249, 607, 938, 3365
BsaJI	CCNNGG	2 cut(s)	516, 2224
BsaWI	WCCGGW	2 cut(s)	1979, 3115
Bsc4I	CCNNNNNNNGG	8 cut(s)	506, 630, 727, 1466, 1961, 2111, 2186, 2225
Bse118I	RCCGGY	3 cut(s)	154, 1979, 2453
Bse1I	ACTGG	5 cut(s)	1318, 1641, 1723, 2570, 3233
Bse21I	CCTNAGG	1 cut(s)	1461
Bse8I	GATNNNNATC	1 cut(s)	815
BseAI	TCCGGA	1 cut(s)	3115
BseBI	CCWGG	5 cut(s)	205, 269, 2187, 2907, 3101
BseCI	ATCGAT	1 cut(s)	890
BseDI	CCNNGG	2 cut(s)	516, 2224
BseGI	GGATG	8 cut(s)	260, 577, 691, 1816, 1924, 2278, 3061, 3112
BseJI	GATNNNNATC	1 cut(s)	815
BseLI	CCNNNNNNNGG	8 cut(s)	506, 630, 727, 1466, 1961, 2111, 2186, 2225
BseMII	CTCAG	3 cut(s)	270, 1839, 3301
BseNI	ACTGG	5 cut(s)	1318, 1641, 1723, 2570, 3233
BseRI	GAGGAG	4 cut(s)	53, 182, 421, 643
BseSI	GKGCMC	3 cut(s)	1774, 2216, 3069
BseXI	GCAGC	6 cut(s)	115, 209, 297, 434, 497, 2437
BseYI	CCCAGC	2 cut(s)	1649, 2437
Bsh1236I	CGCG	1 cut(s)	2652
BshFI	GGCC	8 cut(s)	112, 521, 1772, 1904, 2214, 2466, 2569, 2983
BshNI	GGYRCC	1 cut(s)	1976
BshTI	ACCGGT	1 cut(s)	1979
BshVI	ATCGAT	1 cut(s)	890
BsiHKAI	GWGCWC	2 cut(s)	18, 2506
BsiHKCI	CYCGRG	3 cut(s)	113, 941, 3368
BsiSI	CCGG	5 cut(s)	155, 1980, 2454, 2896, 3116
BslFI	GGGAC	1 cut(s)	3205
BslI	CCNNNNNNNGG	8 cut(s)	506, 630, 727, 1466, 1961, 2111, 2186, 2225
BsmAI	GTCTC	9 cut(s)	130, 249, 555, 607, 848, 938, 2683, 3053, 3365
BsmFI	GGGAC	1 cut(s)	3205
BsmI	GAATGC	1 cut(s)	2959
BsnI	GGCC	8 cut(s)	112, 521, 1772, 1904, 2214, 2466, 2569, 2983
Bso31I	GGTCTC	4 cut(s)	249, 607, 938, 3365
BsoBI	CYCGRG	3 cut(s)	113, 941, 3368
Bsp119I	TTCGAA	2 cut(s)	492, 3280
Bsp120I	GGGCCC	2 cut(s)	1770, 2212
Bsp1286I	GDGCHC	5 cut(s)	18, 1774, 2216, 2506, 3069
Bsp13I	TCCGGA	1 cut(s)	3115
Bsp1720I	GCTNAGC	1 cut(s)	388
Bsp68I	TCGCGA	1 cut(s)	2652
BspACI	CCGC	7 cut(s)	106, 109, 152, 1087, 2208, 2235, 2587
BspANI	GGCC	8 cut(s)	112, 521, 1772, 1904, 2214, 2466, 2569, 2983
BspCNI	CTCAG	3 cut(s)	271, 1840, 3300
BspDI	ATCGAT	1 cut(s)	890
BspEI	TCCGGA	1 cut(s)	3115
BspFNI	CGCG	1 cut(s)	2652
BspHI	TCATGA	2 cut(s)	1369, 3306
BspLI	GGNNCC	6 cut(s)	334, 1772, 1978, 2103, 2213, 2214
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	8 cut(s)	349, 1040, 1277, 2018, 2673, 2782, 2907, 3293
BspQI	GCTCTTC	1 cut(s)	1565
BspT104I	TTCGAA	2 cut(s)	492, 3280
BspT107I	GGYRCC	1 cut(s)	1976
BspTI	CTTAAG	3 cut(s)	1945, 2057, 2116
BspTNI	GGTCTC	4 cut(s)	249, 607, 938, 3365
BsrBI	CCGCTC	1 cut(s)	2587
BsrFI	RCCGGY	3 cut(s)	154, 1979, 2453
BsrI	ACTGG	5 cut(s)	1318, 1641, 1723, 2570, 3233
BssAI	RCCGGY	3 cut(s)	154, 1979, 2453
BssECI	CCNNGG	2 cut(s)	516, 2224
BssNAI	GTATAC	1 cut(s)	2138
BssNI	GRCGYC	1 cut(s)	219
BssSI	CACGAG	3 cut(s)	17, 2619, 3246
BssT1I	CCWWGG	2 cut(s)	516, 2224
Bst1107I	GTATAC	1 cut(s)	2138
Bst2BI	CACGAG	3 cut(s)	17, 2619, 3246
Bst2UI	CCWGG	5 cut(s)	205, 269, 2187, 2907, 3101
Bst6I	CTCTTC	5 cut(s)	904, 1094, 1565, 2541, 3372
BstACI	GRCGYC	1 cut(s)	219
BstAFI	CTTAAG	3 cut(s)	1945, 2057, 2116
BstBAI	YACGTR	1 cut(s)	3143
BstBI	TTCGAA	2 cut(s)	492, 3280
BstC8I	GCNNGC	3 cut(s)	156, 228, 2042
BstENI	CCTNNNNNAGG	4 cut(s)	504, 628, 1464, 2223
BstF5I	GGATG	8 cut(s)	260, 577, 691, 1816, 1924, 2278, 3061, 3112
BstFNI	CGCG	1 cut(s)	2652
BstHHI	GCGC	2 cut(s)	93, 160
BstMAI	GTCTC	9 cut(s)	130, 249, 555, 607, 848, 938, 2683, 3053, 3365
BstMWI	GCNNNNNNNGC	9 cut(s)	109, 151, 157, 197, 227, 1676, 2220, 2244, 3073
BstNI	CCWGG	5 cut(s)	205, 269, 2187, 2907, 3101
BstNSI	RCATGY	2 cut(s)	1262, 1585
BstSCI	CCNGG	6 cut(s)	203, 267, 2185, 2895, 2905, 3099
BstSFI	CTRYAG	2 cut(s)	435, 2248
BstSLI	GKGCMC	3 cut(s)	1774, 2216, 3069
BstUI	CGCG	1 cut(s)	2652
BstV1I	GCAGC	6 cut(s)	115, 209, 297, 434, 497, 2437
BstV2I	GAAGAC	4 cut(s)	627, 666, 1946, 2293
BstX2I	RGATCY	9 cut(s)	410, 476, 704, 1045, 1109, 1687, 2665, 2774, 2899
BstXI	CCANNNNNNTGG	1 cut(s)	1610
BstYI	RGATCY	9 cut(s)	410, 476, 704, 1045, 1109, 1687, 2665, 2774, 2899
BstZ17I	GTATAC	1 cut(s)	2138
Bsu15I	ATCGAT	1 cut(s)	890
Bsu36I	CCTNAGG	1 cut(s)	1461
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	8 cut(s)	112, 521, 1772, 1904, 2214, 2466, 2569, 2983
BsuTUI	ATCGAT	1 cut(s)	890
BtgZI	GCGATG	1 cut(s)	2667
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	8 cut(s)	260, 577, 691, 1816, 1924, 2278, 3061, 3112
BtsI	GCAGTG	3 cut(s)	54, 444, 2092
BtuMI	TCGCGA	1 cut(s)	2652
Cac8I	GCNNGC	3 cut(s)	156, 228, 2042
CaiI	CAGNNNCTG	1 cut(s)	656
CciI	TCATGA	2 cut(s)	1369, 3306
CfoI	GCGC	2 cut(s)	93, 160
Cfr10I	RCCGGY	3 cut(s)	154, 1979, 2453
Cfr13I	GGNCC	7 cut(s)	111, 520, 1770, 1771, 2212, 2213, 3124
ClaI	ATCGAT	1 cut(s)	890
CseI	GACGC	1 cut(s)	227
CsiI	ACCWGGT	2 cut(s)	2905, 3099
Csp6I	GTAC	7 cut(s)	322, 1614, 1952, 1977, 2425, 2990, 3140
CspAI	ACCGGT	1 cut(s)	1979
CviQI	GTAC	7 cut(s)	322, 1614, 1952, 1977, 2425, 2990, 3140
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	5 cut(s)	904, 1094, 1565, 2541, 3372
EarI	CTCTTC	5 cut(s)	904, 1094, 1565, 2541, 3372
Eco130I	CCWWGG	2 cut(s)	516, 2224
Eco24I	GRGCYC	2 cut(s)	1774, 2216
Eco31I	GGTCTC	4 cut(s)	249, 607, 938, 3365
Eco32I	GATATC	1 cut(s)	2011
Eco47I	GGWCC	1 cut(s)	3124
Eco57I	CTGAAG	2 cut(s)	522, 678
Eco81I	CCTNAGG	1 cut(s)	1461
Eco88I	CYCGRG	3 cut(s)	113, 941, 3368
EcoNI	CCTNNNNNAGG	4 cut(s)	504, 628, 1464, 2223
EcoO109I	RGGNCCY	4 cut(s)	520, 1771, 2212, 2213
EcoRI	GAATTC	1 cut(s)	3129
EcoRII	CCWGG	5 cut(s)	203, 267, 2185, 2905, 3099
EcoRV	GATATC	1 cut(s)	2011
EcoT14I	CCWWGG	2 cut(s)	516, 2224
EcoT38I	GRGCYC	2 cut(s)	1774, 2216
ErhI	CCWWGG	2 cut(s)	516, 2224
FalI	AAGNNNNNCTT	4 cut(s)	1018, 1050, 2370, 2402
FaqI	GGGAC	1 cut(s)	3205
FauI	CCCGC	1 cut(s)	2201
FauNDI	CATATG	1 cut(s)	2418
FblI	GTMKAC	1 cut(s)	2137
FokI	GGATG	8 cut(s)	247, 564, 698, 1803, 1911, 2285, 3068, 3099
FriOI	GRGCYC	2 cut(s)	1774, 2216
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	2 cut(s)	92, 159
GsaI	CCCAGC	2 cut(s)	1653, 2441
GsuI	CTGGAG	1 cut(s)	1658
HaeIII	GGCC	8 cut(s)	112, 521, 1772, 1904, 2214, 2466, 2569, 2983
HapII	CCGG	5 cut(s)	155, 1980, 2454, 2896, 3116
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	93, 160
Hin1I	GRCGYC	1 cut(s)	219
Hin6I	GCGC	2 cut(s)	91, 158
HinP1I	GCGC	2 cut(s)	91, 158
HincII	GTYRAC	5 cut(s)	1623, 1716, 2359, 2754, 2949
HindII	GTYRAC	5 cut(s)	1623, 1716, 2359, 2754, 2949
HindIII	AAGCTT	4 cut(s)	385, 1123, 1801, 2379
HpaII	CCGG	5 cut(s)	155, 1980, 2454, 2896, 3116
HphI	GGTGA	4 cut(s)	686, 1253, 1994, 2033
Hpy99I	CGWCG	3 cut(s)	77, 218, 221
HpyCH4IV	ACGT	5 cut(s)	257, 732, 1167, 2256, 3142
HpyF10VI	GCNNNNNNNGC	9 cut(s)	109, 151, 157, 197, 227, 1676, 2220, 2244, 3073
HpySE526I	ACGT	5 cut(s)	257, 732, 1167, 2256, 3142
Hsp92I	GRCGYC	1 cut(s)	219
HspAI	GCGC	2 cut(s)	91, 158
Kpn2I	TCCGGA	1 cut(s)	3115
KpnI	GGTACC	1 cut(s)	1980
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
LguI	GCTCTTC	1 cut(s)	1565
LmnI	GCTCC	4 cut(s)	658, 1550, 2885, 3118
Lsp1109I	GCAGC	6 cut(s)	115, 209, 297, 434, 497, 2437
LweI	GCATC	3 cut(s)	586, 1215, 2644
MabI	ACCWGGT	2 cut(s)	2905, 3099
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	5 cut(s)	257, 732, 1167, 2256, 3142
MaeIII	GTNAC	6 cut(s)	1175, 1444, 1759, 2120, 2924, 3092
MbiI	CCGCTC	1 cut(s)	2587
MfeI	CAATTG	1 cut(s)	2106
MflI	RGATCY	9 cut(s)	410, 476, 704, 1045, 1109, 1687, 2665, 2774, 2899
MhlI	GDGCHC	5 cut(s)	18, 1774, 2216, 2506, 3069
MlyI	GAGTC	5 cut(s)	292, 1111, 1323, 2954, 3304
MmeI	TCCRAC	3 cut(s)	663, 2564, 2899
MreI	CGCCGGCG	1 cut(s)	154
MroI	TCCGGA	1 cut(s)	3115
MroNI	GCCGGC	1 cut(s)	154
MslI	CAYNNNNRTG	1 cut(s)	2511
MspA1I	CMGCKG	2 cut(s)	106, 1292
MspCI	CTTAAG	3 cut(s)	1945, 2057, 2116
MspI	CCGG	5 cut(s)	155, 1980, 2454, 2896, 3116
MspR9I	CCNGG	6 cut(s)	205, 269, 2187, 2897, 2907, 3101
MunI	CAATTG	1 cut(s)	2106
Mva1269I	GAATGC	1 cut(s)	2959
MvaI	CCWGG	5 cut(s)	205, 269, 2187, 2907, 3101
MvnI	CGCG	1 cut(s)	2652
MwoI	GCNNNNNNNGC	9 cut(s)	109, 151, 157, 197, 227, 1676, 2220, 2244, 3073
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	2897
NdeI	CATATG	1 cut(s)	2418
NgoMIV	GCCGGC	1 cut(s)	154
NlaIV	GGNNCC	6 cut(s)	334, 1772, 1978, 2103, 2213, 2214
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	4 cut(s)	1175, 1759, 2924, 3092
NruI	TCGCGA	1 cut(s)	2652
NspI	RCATGY	2 cut(s)	1262, 1585
NspV	TTCGAA	2 cut(s)	492, 3280
PaeR7I	CTCGAG	1 cut(s)	3368
PagI	TCATGA	2 cut(s)	1369, 3306
PciSI	GCTCTTC	1 cut(s)	1565
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 3032
PctI	GAATGC	1 cut(s)	2959
PdiI	GCCGGC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	1961
PfoI	TCCNGGA	4 cut(s)	203, 267, 2185, 2895
PinAI	ACCGGT	1 cut(s)	1979
PleI	GAGTC	5 cut(s)	292, 1110, 1322, 2953, 3304
PpsI	GAGTC	5 cut(s)	292, 1110, 1322, 2953, 3304
Ppu21I	YACGTR	1 cut(s)	3143
PsiI	TTATAA	1 cut(s)	1329
Psp1406I	AACGTT	1 cut(s)	2256
Psp6I	CCWGG	5 cut(s)	203, 267, 2185, 2905, 3099
PspFI	CCCAGC	2 cut(s)	1649, 2437
PspGI	CCWGG	5 cut(s)	203, 267, 2185, 2905, 3099
PspN4I	GGNNCC	6 cut(s)	334, 1772, 1978, 2103, 2213, 2214
PspOMI	GGGCCC	2 cut(s)	1770, 2212
PspPI	GGNCC	7 cut(s)	111, 520, 1770, 1771, 2212, 2213, 3124
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	9 cut(s)	410, 476, 704, 1045, 1109, 1687, 2665, 2774, 2899
PvuII	CAGCTG	1 cut(s)	1292
RruI	TCGCGA	1 cut(s)	2652
RsaI	GTAC	7 cut(s)	323, 1615, 1953, 1978, 2426, 2991, 3141
RsaNI	GTAC	7 cut(s)	322, 1614, 1952, 1977, 2425, 2990, 3140
RseI	CAYNNNNRTG	1 cut(s)	2511
SapI	GCTCTTC	1 cut(s)	1565
Sau96I	GGNCC	7 cut(s)	111, 520, 1770, 1771, 2212, 2213, 3124
SchI	GAGTC	5 cut(s)	292, 1111, 1323, 2954, 3304
ScrFI	CCNGG	6 cut(s)	205, 269, 2187, 2897, 2907, 3101
SduI	GDGCHC	5 cut(s)	18, 1774, 2216, 2506, 3069
SexAI	ACCWGGT	2 cut(s)	2905, 3099
SfaNI	GCATC	3 cut(s)	586, 1215, 2644
SfcI	CTRYAG	2 cut(s)	435, 2248
Sfr274I	CTCGAG	1 cut(s)	3368
SfuI	TTCGAA	2 cut(s)	492, 3280
SgrAI	CRCCGGYG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	3124
SlaI	CTCGAG	1 cut(s)	3368
SmiMI	CAYNNNNRTG	1 cut(s)	2511
SmlI	CTYRAG	7 cut(s)	625, 1068, 1185, 1945, 2057, 2116, 3368
SmoI	CTYRAG	7 cut(s)	625, 1068, 1185, 1945, 2057, 2116, 3368
SsiI	CCGC	7 cut(s)	106, 109, 152, 1087, 2208, 2235, 2587
SspI	AATATT	1 cut(s)	1307
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	6 cut(s)	203, 267, 2185, 2895, 2905, 3099
StyI	CCWWGG	2 cut(s)	516, 2224
TaiI	ACGT	5 cut(s)	260, 735, 1170, 2259, 3145
TaqII	GACCGA	1 cut(s)	3141
TauI	GCSGC	4 cut(s)	109, 112, 154, 2238
TseFI	GTSAC	4 cut(s)	1175, 1759, 2924, 3092
TseI	GCWGC	6 cut(s)	103, 197, 285, 447, 510, 2450
Tsp45I	GTSAC	4 cut(s)	1175, 1759, 2924, 3092
TspGWI	ACGGA	2 cut(s)	253, 612
Van91I	CCANNNNNTGG	1 cut(s)	1961
Vha464I	CTTAAG	3 cut(s)	1945, 2057, 2116
VpaK11BI	GGWCC	1 cut(s)	3124
XagI	CCTNNNNNAGG	4 cut(s)	504, 628, 1464, 2223
XapI	RAATTY	9 cut(s)	488, 757, 843, 1277, 2172, 2859, 2890, 3129, 3358
XceI	RCATGY	2 cut(s)	1262, 1585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XhoI	CTCGAG	1 cut(s)	3368
XmiI	GTMKAC	1 cut(s)	2137
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.