Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

10887096 .. 10889402

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0138000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGGCTTTGAAACTTGATCTTAGTAAGGCTTATGACCCCATGGAATGGCTCTTTCTTCGGAACGTAATGGTCAGGCTAGGTTTTGCCCAGGATTGGATAGAGATGGTGATGCAATGTGTATCTACGGTTAGATATTCTTTTCTGGTTCGGGGTAAACCAAGAGGATTGGTGATTCCGAGTCGGGGATTGAGGCAAGGGGATCCTCTGTCGCAACAGAAGCAGGCGATGGGTCTTTTGCCTGGTATTGTGGTATGTATGGGTGCTCCTTCTGTGAATCATTTATTGTTTGCGGATGATAGTATGATATATGCACAAGCTACCGTGGAGGCGTGTTATGAGTTACAGGATGTGATTGAGACTTATGGTAGGGCATCGGGTCAATTAGTTAATTTTGATAAGAGTTTGGTGGTGTTTAGCAAAAATGTACCGAATATGTTGCAGGAGGAAATCTCGAGTTTGTTGGGCGTGGAGGTGGTTGACTCACATGAACGGAAGGAAGAAGCTAGACAGCTACCTTCCAATATATTAAAGAGAATTTGGCTAAAAAAATATCTCATTGGGAAGGATATTCTCATTCGGGTGGTTGCTCAAGCTCTTCCCACTTATGCAATGAGTGTTTTTCAGCTAACTAATGGTTTATGTGAAGATTTGGAACAAATGTGTGCAAGGTTTTGGTGGGGTAGTACAACGGATAAGCGAAAGATCCATTGGAAGACTTGGAAGGCCTTATGTAACCCTAGGAAAGTAGGAGGATTAGGGTTTCGTAGTTTGTCCATGTTTAATTCGGCCATGCTAGCAAAGCAGGCTTGGCGAGTTGTCTCGAATCCATCTCCTCTAGTGGCTAGGATTTATAAAGCCAAATATTTCCCGGAGGATACCTTTTGGTTAGCCCCGGATCATGCCTTACCATCGTACTCATGGAGAAGTATTATGTCGACTAGGGAGATTTTGAAGGCCAATTCATATTGGCAGATTGGGGATGGATCAAATGTGCGAGTTTTTTCGGATTGTTGGGTACCAGAGTTGCCAGCTGGGAGACCTACTGAAAGTCCTAACCTAGTGGGGGCTGTACATACGGTTAATGAGCTAATTACGGATTCATGGTATTGGGATATTCCTCTTCTACAAGAATTGTTTTCTACGGAGGAAGTGGACATTATCTCAAGGATACCTTTAAGCCAACGTGTAGTGGAGGATAGATTGGTATGGAGGTTGGCCAAGGATGGGTTATTTTCAGTCAAAACTACTTATAGTAGGTCAGTGCAAGTCTCCTCCAGTATCGTCCCTTGTGATTTGCCAGTGAGTGGTAGTTTTTGGCAAAAGCTCTGGAAGGTGCATATTCCTAACTCAGCTAAAATACACATGTGGAAGGTCGGGAAACAACTCTGCATATCTGCAAAAGACTGTCCTTACTCTCAACGTGTTCTGCAATCTCATGGGGTTTTACGTCAGGAGCAAAAGACGAGTGAGGCTTGTGATGTTGTGTTGAAGACAATGTCTCGGCTTCAGGAATTTATCTTCTACAACTCTAAGGTGGCCAGCTCTGTTACTTGCAGAGCTCGTAGGGTGCAGTGGTCAGCTCCACCGTTAGGGGTTCTTAAAGTGAATGTAGATGGCGCGTTCCACCATATTACCCGAAAGGGCGGGGTTGGTTTTATCATCAGGAACTCGAATGGGCATGTGGTTGCAGGAGGGGGGCGACCTTTGTCTGGTTTGGTTTCTGCAGAGCATGCCGAGCTGTTAGCATGCATGATGGCGGTGGAGTTTTTAGTTAACCAGGAGTTCCGACTTGCAGTGTTGGAAACTGATGCGTTGATGGTGCAACGACAACTGACCTCCTATGTTGGAAGCAACACGTCGATACTTGGTCGTTTGTATGATGATTTGGTATCAATCCTGGCTGTAAACACGGATATCTCGGTCACCTATAAGGGAAGGAAGGCCAATATGGCAGCGCATATCCTTGCTGCTCATGCTTGCAGTGAAAATCAAGATTTTTTCTTCTTTTTTTCTACACCTTCTTTTCTGCAAGCTGATATTAGCTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

683

Amino Acids

76.9

Weight (kDa)

9.01

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	2 - 147	1.7e-07	Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3	PF13456	536 - 659	2.6e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc65I	GGTACC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	1015
AccB7I	CCANNNNNTGG	2 cut(s)	45, 1304
AccI	GTMKAC	1 cut(s)	935
AccII	CGCG	1 cut(s)	1619
AciI	CCGC	3 cut(s)	290, 1644, 1757
AclWI	GGATC	5 cut(s)	194, 207, 697, 903, 991
AcoI	YGGCCR	3 cut(s)	786, 1215, 1536
AcsI	RAATTY	2 cut(s)	534, 1511
AcuI	CTGAAG	1 cut(s)	1490
AfaI	GTAC	5 cut(s)	426, 685, 914, 1017, 1071
AfiI	CCNNNNNNNGG	8 cut(s)	45, 93, 182, 1063, 1224, 1304, 1589, 1709
AflIII	ACRYGT	4 cut(s)	1183, 1362, 1420, 1854
AgsI	TTSAA	3 cut(s)	10, 952, 1489
AjiI	CACGTC	1 cut(s)	1857
AjnI	CCWGG	4 cut(s)	87, 238, 1776, 1896
AjuI	GAANNNNNNNTTGG	2 cut(s)	691, 723
Alw21I	GWGCWC	2 cut(s)	265, 1561
Alw26I	GTCTC	5 cut(s)	350, 823, 1030, 1273, 1503
AlwI	GGATC	5 cut(s)	194, 207, 697, 903, 991
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	6 cut(s)	723, 786, 954, 1215, 1536, 1941
ApeKI	GCWGC	2 cut(s)	1952, 1967
ApoI	RAATTY	2 cut(s)	534, 1511
Asp718I	GGTACC	1 cut(s)	1015
AspA2I	CCTAGG	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	1619, 1957
AsuC2I	CCSGG	2 cut(s)	869, 893
AsuHPI	GGTGA	3 cut(s)	118, 181, 1915
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	451
AvrII	CCTAGG	1 cut(s)	737
BaeI	ACNNNNGTAYC	2 cut(s)	1007, 1040
BalI	TGGCCA	2 cut(s)	1217, 1538
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	1015
BanII	GRGCYC	1 cut(s)	1561
BbsI	GAAGAC	2 cut(s)	719, 1496
Bbv12I	GWGCWC	2 cut(s)	265, 1561
BbvI	GCAGC	2 cut(s)	1954, 1964
BccI	CCATC	9 cut(s)	97, 220, 835, 916, 974, 1217, 1607, 1747, 1810
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	4 cut(s)	89, 240, 1778, 1898
BciVI	GTATCC	2 cut(s)	868, 1161
BcnI	CCSGG	2 cut(s)	869, 893
BcoDI	GTCTC	5 cut(s)	350, 823, 1030, 1273, 1503
BfaI	CTAG	8 cut(s)	77, 504, 738, 794, 836, 843, 939, 1058
BfmI	CTRYAG	1 cut(s)	1722
BfuI	GTATCC	2 cut(s)	868, 1161
BglI	GCCNNNNNGGC	1 cut(s)	1949
BisI	GCNGC	2 cut(s)	1953, 1968
BlnI	CCTAGG	1 cut(s)	737
BlsI	GCNGC	2 cut(s)	1954, 1969
Bme1390I	CCNGG	6 cut(s)	89, 240, 869, 893, 1778, 1898
BmeT110I	CYCGRG	1 cut(s)	451
BmgBI	CACGTC	1 cut(s)	1857
BmiI	GGNNCC	2 cut(s)	201, 1017
BmrFI	CCNGG	6 cut(s)	89, 240, 869, 893, 1778, 1898
BmsI	GCATC	3 cut(s)	99, 380, 1798
BmtI	GCTAGC	1 cut(s)	797
BoxI	GACNNNNGTC	1 cut(s)	1705
BpiI	GAAGAC	2 cut(s)	719, 1496
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpmI	CTGGAG	1 cut(s)	1258
BpuEI	CTTGAG	2 cut(s)	573, 1147
BpuMI	CCSGG	2 cut(s)	869, 893
BsaI	GGTCTC	1 cut(s)	1030
BsaJI	CCNNGG	6 cut(s)	39, 87, 321, 737, 891, 1218
Bsc4I	CCNNNNNNNGG	8 cut(s)	45, 93, 182, 1063, 1224, 1304, 1589, 1709
Bse1I	ACTGG	2 cut(s)	1275, 1298
Bse3DI	GCAATG	2 cut(s)	119, 615
BseBI	CCWGG	4 cut(s)	89, 240, 1778, 1898
BseDI	CCNNGG	6 cut(s)	39, 87, 321, 737, 891, 1218
BseGI	GGATG	4 cut(s)	298, 352, 985, 1228
BseLI	CCNNNNNNNGG	8 cut(s)	45, 93, 182, 1063, 1224, 1304, 1589, 1709
BseMI	GCAATG	2 cut(s)	119, 615
BseMII	CTCAG	1 cut(s)	1362
BseNI	ACTGG	2 cut(s)	1275, 1298
BseRI	GAGGAG	2 cut(s)	822, 1261
BseXI	GCAGC	2 cut(s)	1954, 1964
BseYI	CCCAGC	1 cut(s)	1031
BsgI	GTGCAG	1 cut(s)	1589
Bsh1236I	CGCG	1 cut(s)	1619
BshFI	GGCC	6 cut(s)	725, 788, 956, 1217, 1538, 1943
BshNI	GGYRCC	1 cut(s)	1015
BsiHKAI	GWGCWC	2 cut(s)	265, 1561
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	869, 893
BslFI	GGGAC	1 cut(s)	1268
BslI	CCNNNNNNNGG	8 cut(s)	45, 93, 182, 1063, 1224, 1304, 1589, 1709
BsmAI	GTCTC	5 cut(s)	350, 823, 1030, 1273, 1503
BsmFI	GGGAC	1 cut(s)	1268
BsnI	GGCC	6 cut(s)	725, 788, 956, 1217, 1538, 1943
Bso31I	GGTCTC	1 cut(s)	1030
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	265, 1561
Bsp1407I	TGTACA	1 cut(s)	1069
Bsp143I	GATC	5 cut(s)	16, 199, 702, 895, 983
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	290, 1644, 1757
BspANI	GGCC	6 cut(s)	725, 788, 956, 1217, 1538, 1943
BspCNI	CTCAG	1 cut(s)	1361
BspFNI	CGCG	1 cut(s)	1619
BspLI	GGNNCC	2 cut(s)	201, 1017
BspMAI	CTGCAG	1 cut(s)	1726
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	5 cut(s)	194, 207, 697, 903, 991
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	1015
BspTNI	GGTCTC	1 cut(s)	1030
BsrDI	GCAATG	2 cut(s)	119, 615
BsrGI	TGTACA	1 cut(s)	1069
BsrI	ACTGG	2 cut(s)	1275, 1298
BssECI	CCNNGG	6 cut(s)	39, 87, 321, 737, 891, 1218
BssMI	GATC	5 cut(s)	16, 199, 702, 895, 983
BssT1I	CCWWGG	3 cut(s)	39, 737, 1218
Bst2UI	CCWGG	4 cut(s)	89, 240, 1778, 1898
Bst4CI	ACNGT	5 cut(s)	127, 322, 1078, 1406, 1587
Bst6I	CTCTTC	2 cut(s)	600, 1125
BstAPI	GCANNNNNTGC	1 cut(s)	1730
BstAUI	TGTACA	1 cut(s)	1069
BstC8I	GCNNGC	9 cut(s)	222, 795, 804, 1029, 1540, 1731, 1747, 1978, 2031
BstDEI	CTNAG	3 cut(s)	20, 1348, 1530
BstDSI	CCRYGG	2 cut(s)	39, 321
BstEII	GGTNACC	1 cut(s)	1921
BstF5I	GGATG	4 cut(s)	298, 352, 985, 1228
BstFNI	CGCG	1 cut(s)	1619
BstHHI	GCGC	2 cut(s)	1619, 1957
BstKTI	GATC	5 cut(s)	19, 202, 705, 898, 986
BstMAI	GTCTC	5 cut(s)	350, 823, 1030, 1273, 1503
BstMBI	GATC	5 cut(s)	16, 199, 702, 895, 983
BstMWI	GCNNNNNNNGC	9 cut(s)	217, 794, 799, 803, 808, 1730, 1735, 1949, 1973
BstNI	CCWGG	4 cut(s)	89, 240, 1778, 1898
BstNSI	RCATGY	4 cut(s)	1366, 1682, 1733, 1749
BstPAI	GACNNNNGTC	1 cut(s)	1705
BstPI	GGTNACC	1 cut(s)	1921
BstSCI	CCNGG	6 cut(s)	87, 238, 867, 891, 1776, 1896
BstSFI	CTRYAG	1 cut(s)	1722
BstUI	CGCG	1 cut(s)	1619
BstV1I	GCAGC	2 cut(s)	1954, 1964
BstV2I	GAAGAC	2 cut(s)	719, 1496
BstX2I	RGATCY	2 cut(s)	199, 702
BstYI	RGATCY	2 cut(s)	199, 702
BsuI	GTATCC	2 cut(s)	868, 1161
BsuRI	GGCC	6 cut(s)	725, 788, 956, 1217, 1538, 1943
BtgI	CCRYGG	2 cut(s)	39, 321
BtgZI	GCGATG	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	1857
BtsCI	GGATG	4 cut(s)	298, 352, 985, 1228
BtsI	GCAGTG	3 cut(s)	1577, 1800, 1987
BtsIMutI	CAGTG	5 cut(s)	1266, 1305, 1577, 1800, 1987
Cac8I	GCNNGC	9 cut(s)	222, 795, 804, 1029, 1540, 1731, 1747, 1978, 2031
CfoI	GCGC	2 cut(s)	1619, 1957
Csp6I	GTAC	5 cut(s)	425, 684, 913, 1016, 1070
CviQI	GTAC	5 cut(s)	425, 684, 913, 1016, 1070
DdeI	CTNAG	3 cut(s)	20, 1348, 1530
DpnI	GATC	5 cut(s)	18, 201, 704, 897, 985
DpnII	GATC	5 cut(s)	16, 199, 702, 895, 983
EaeI	YGGCCR	3 cut(s)	786, 1215, 1536
Eam1104I	CTCTTC	2 cut(s)	600, 1125
EarI	CTCTTC	2 cut(s)	600, 1125
Ecl136II	GAGCTC	1 cut(s)	1559
Eco130I	CCWWGG	3 cut(s)	39, 737, 1218
Eco147I	AGGCCT	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	1561
Eco31I	GGTCTC	1 cut(s)	1030
Eco32I	GATATC	1 cut(s)	1915
Eco53kI	GAGCTC	1 cut(s)	1559
Eco57I	CTGAAG	1 cut(s)	1490
Eco88I	CYCGRG	1 cut(s)	451
Eco91I	GGTNACC	1 cut(s)	1921
EcoICRI	GAGCTC	1 cut(s)	1559
EcoO65I	GGTNACC	1 cut(s)	1921
EcoRII	CCWGG	4 cut(s)	87, 238, 1776, 1896
EcoRV	GATATC	1 cut(s)	1915
EcoT14I	CCWWGG	3 cut(s)	39, 737, 1218
EcoT22I	ATGCAT	1 cut(s)	1751
EcoT38I	GRGCYC	1 cut(s)	1561
ErhI	CCWWGG	3 cut(s)	39, 737, 1218
FalI	AAGNNNNNCTT	2 cut(s)	1156, 1188
FaqI	GGGAC	1 cut(s)	1268
FauI	CCCGC	1 cut(s)	1637
FblI	GTMKAC	1 cut(s)	935
Fnu4HI	GCNGC	2 cut(s)	1953, 1968
FokI	GGATG	4 cut(s)	305, 359, 992, 1235
FriOI	GRGCYC	1 cut(s)	1561
Fsp4HI	GCNGC	2 cut(s)	1953, 1968
FspBI	CTAG	8 cut(s)	77, 504, 738, 794, 836, 843, 939, 1058
GlaI	GCGC	2 cut(s)	1618, 1956
GluI	GCNGC	2 cut(s)	1953, 1968
GsaI	CCCAGC	1 cut(s)	1035
GsuI	CTGGAG	1 cut(s)	1258
HaeIII	GGCC	6 cut(s)	725, 788, 956, 1217, 1538, 1943
HapII	CCGG	2 cut(s)	869, 893
HhaI	GCGC	2 cut(s)	1619, 1957
Hin6I	GCGC	2 cut(s)	1617, 1955
HinP1I	GCGC	2 cut(s)	1617, 1955
HincII	GTYRAC	3 cut(s)	478, 936, 1774
HindII	GTYRAC	3 cut(s)	478, 936, 1774
HinfI	GANTC	6 cut(s)	172, 178, 274, 479, 823, 1097
HpaI	GTTAAC	1 cut(s)	1774
HpaII	CCGG	2 cut(s)	869, 893
HphI	GGTGA	3 cut(s)	118, 181, 1915
Hpy166II	GTNNAC	6 cut(s)	155, 478, 936, 1153, 1774, 1906
Hpy188I	TCNGA	4 cut(s)	60, 177, 1006, 1787
Hpy188III	TCNNGA	8 cut(s)	451, 820, 1327, 1375, 1451, 1508, 1663, 1991
Hpy8I	GTNNAC	6 cut(s)	155, 478, 936, 1153, 1774, 1906
Hpy99I	CGWCG	1 cut(s)	1861
HpyCH4III	ACNGT	5 cut(s)	127, 322, 1078, 1406, 1587
HpyCH4IV	ACGT	5 cut(s)	63, 1183, 1420, 1447, 1856
HpyF10VI	GCNNNNNNNGC	9 cut(s)	217, 794, 799, 803, 808, 1730, 1735, 1949, 1973
HpyF3I	CTNAG	3 cut(s)	20, 1348, 1530
HpySE526I	ACGT	5 cut(s)	63, 1183, 1420, 1447, 1856
HspAI	GCGC	2 cut(s)	1617, 1955
KpnI	GGTACC	1 cut(s)	1019
KspAI	GTTAAC	1 cut(s)	1774
Kzo9I	GATC	5 cut(s)	16, 199, 702, 895, 983
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	268, 1453, 1585
Lsp1109I	GCAGC	2 cut(s)	1954, 1964
LweI	GCATC	3 cut(s)	99, 380, 1798
MaeI	CTAG	8 cut(s)	77, 504, 738, 794, 836, 843, 939, 1058
MaeII	ACGT	5 cut(s)	63, 1183, 1420, 1447, 1856
MaeIII	GTNAC	4 cut(s)	339, 731, 1546, 1921
MalI	GATC	5 cut(s)	18, 201, 704, 897, 985
MboI	GATC	5 cut(s)	16, 199, 702, 895, 983
MboII	GAAGA	9 cut(s)	47, 509, 587, 656, 724, 1112, 1501, 1510, 1993
MflI	RGATCY	2 cut(s)	199, 702
MhlI	GDGCHC	2 cut(s)	265, 1561
MlsI	TGGCCA	2 cut(s)	1217, 1538
MluCI	AATT	8 cut(s)	380, 388, 534, 781, 958, 1089, 1130, 1511
MluNI	TGGCCA	2 cut(s)	1217, 1538
MlyI	GAGTC	2 cut(s)	187, 473
MmeI	TCCRAC	3 cut(s)	1779, 1810, 1825
Mox20I	TGGCCA	2 cut(s)	1217, 1538
Mph1103I	ATGCAT	1 cut(s)	1751
MscI	TGGCCA	2 cut(s)	1217, 1538
MseI	TTAA	8 cut(s)	387, 527, 780, 1080, 1175, 1599, 1773, 2045
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	2 cut(s)	1217, 1538
MspA1I	CMGCKG	1 cut(s)	1031
MspI	CCGG	2 cut(s)	869, 893
MspR9I	CCNGG	6 cut(s)	89, 240, 869, 893, 1778, 1898
MvaI	CCWGG	4 cut(s)	89, 240, 1778, 1898
MvnI	CGCG	1 cut(s)	1619
MwoI	GCNNNNNNNGC	9 cut(s)	217, 794, 799, 803, 808, 1730, 1735, 1949, 1973
NciI	CCSGG	2 cut(s)	869, 893
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	16, 199, 702, 895, 983
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	2 cut(s)	201, 1017
NmeAIII	GCCGAG	2 cut(s)	1480, 1759
NmuCI	GTSAC	1 cut(s)	1921
NsiI	ATGCAT	1 cut(s)	1751
NspI	RCATGY	4 cut(s)	1366, 1682, 1733, 1749
PaeI	GCATGC	2 cut(s)	1733, 1749
PaeR7I	CTCGAG	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	725
PciI	ACATGT	1 cut(s)	1362
PciSI	GCTCTTC	1 cut(s)	600
PfeI	GAWTC	4 cut(s)	172, 274, 823, 1097
PflFI	GACNNNGTC	1 cut(s)	1495
PflMI	CCANNNNNTGG	2 cut(s)	45, 1304
PfoI	TCCNGGA	1 cut(s)	867
PkrI	GCNGC	2 cut(s)	1954, 1969
PleI	GAGTC	2 cut(s)	186, 473
PpsI	GAGTC	2 cut(s)	186, 473
PscI	ACATGT	1 cut(s)	1362
PshAI	GACNNNNGTC	1 cut(s)	1705
PsiI	TTATAA	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	1561
Psp6I	CCWGG	4 cut(s)	87, 238, 1776, 1896
PspEI	GGTNACC	1 cut(s)	1921
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	4 cut(s)	87, 238, 1776, 1896
PspN4I	GGNNCC	2 cut(s)	201, 1017
PstI	CTGCAG	1 cut(s)	1726
PsuI	RGATCY	2 cut(s)	199, 702
PsyI	GACNNNGTC	1 cut(s)	1495
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	5 cut(s)	426, 685, 914, 1017, 1071
RsaNI	GTAC	5 cut(s)	425, 684, 913, 1016, 1070
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	1561
SalI	GTCGAC	1 cut(s)	934
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	8 cut(s)	387, 527, 780, 1080, 1175, 1599, 1773, 2045
SatI	GCNGC	2 cut(s)	1953, 1968
Sau3AI	GATC	5 cut(s)	16, 199, 702, 895, 983
SchI	GAGTC	2 cut(s)	187, 473
ScrFI	CCNGG	6 cut(s)	89, 240, 869, 893, 1778, 1898
SduI	GDGCHC	2 cut(s)	265, 1561
SfaNI	GCATC	3 cut(s)	99, 380, 1798
SfcI	CTRYAG	1 cut(s)	1722
Sfr274I	CTCGAG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	3 cut(s)	451, 588, 1162
SmoI	CTYRAG	3 cut(s)	451, 588, 1162
SphI	GCATGC	2 cut(s)	1733, 1749
Sse9I	AATT	8 cut(s)	380, 388, 534, 781, 958, 1089, 1130, 1511
SseBI	AGGCCT	1 cut(s)	725
SsiI	CCGC	3 cut(s)	290, 1644, 1757
SspI	AATATT	1 cut(s)	863
SspMI	CTAG	8 cut(s)	77, 504, 738, 794, 836, 843, 939, 1058
SstI	GAGCTC	1 cut(s)	1561
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	6 cut(s)	87, 238, 867, 891, 1776, 1896
StyI	CCWWGG	3 cut(s)	39, 737, 1218
TaaI	ACNGT	5 cut(s)	127, 322, 1078, 1406, 1587
TaiI	ACGT	5 cut(s)	66, 1186, 1423, 1450, 1859
TaqI	TCGA	5 cut(s)	452, 821, 935, 1670, 1859
TaqII	GACCGA	1 cut(s)	1909
TasI	AATT	8 cut(s)	380, 388, 534, 781, 958, 1089, 1130, 1511
TatI	WGTACW	2 cut(s)	683, 1069
TfiI	GAWTC	4 cut(s)	172, 274, 823, 1097
Tru1I	TTAA	8 cut(s)	387, 527, 780, 1080, 1175, 1599, 1773, 2045
Tru9I	TTAA	8 cut(s)	387, 527, 780, 1080, 1175, 1599, 1773, 2045
TscAI	CASTG	5 cut(s)	1266, 1305, 1577, 1800, 1987
TseFI	GTSAC	1 cut(s)	1921
TseI	GCWGC	2 cut(s)	1952, 1967
Tsp45I	GTSAC	1 cut(s)	1921
TspDTI	ATGAA	3 cut(s)	501, 951, 1089
TspGWI	ACGGA	5 cut(s)	505, 704, 1109, 1157, 1925
TspRI	CASTG	5 cut(s)	1266, 1305, 1577, 1800, 1987
Tth111I	GACNNNGTC	1 cut(s)	1495
Van91I	CCANNNNNTGG	2 cut(s)	45, 1304
XapI	RAATTY	2 cut(s)	534, 1511
XceI	RCATGY	4 cut(s)	1366, 1682, 1733, 1749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	915
XhoI	CTCGAG	1 cut(s)	451
XmaJI	CCTAGG	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	935
XspI	CTAG	8 cut(s)	77, 504, 738, 794, 836, 843, 939, 1058
Zsp2I	ATGCAT	1 cut(s)	1751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.