Rorug07G0138100
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001625
Physical Location & Seq
Forward (+)
10893443 .. 10893778
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0138100.1

Sequence Viewer

Length: 336 bp
ATGCTCTTCATACCGCTCATCTGCATCAGTATTCCAATAACGTGGTTTAAAGAGATTCTAAATTGTTACTGGATTGCATTCAAGGTAGATGTCAAATCCCATGGATCGAGGATCAAAGTTCTCATGTCCGACATTCAGAAGTTGGCTTCACAGTTTCAATCCATCGTCTTCAGACATATTTACAGAGAAGTAAATTTTGTAGCCGACCGATTAGCTGCACTGGCTCACAGTTCTCAGAATCCTTTTGTTTGGTTTTTTTTGTTTCCCCTTTCTGTGTCCCCAGCGTTCTATTTAGATCAGCTGGGAGGGGGTGTAAGTAGAGGCTTTGTTTTCTAG

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

9.39

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 33 - 74 1.5e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 1 cut(s) 14
AclWI GGATC 2 cut(s) 112, 119
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 82, 158
AluBI AGCT 2 cut(s) 215, 301
AluI AGCT 2 cut(s) 215, 301
AlwI GGATC 2 cut(s) 112, 119
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 170
BfaI CTAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse1I ACTGG 2 cut(s) 74, 225
BseDI CCNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 2 cut(s) 74, 225
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 2 cut(s) 280, 301
BsgI GTGCAG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 208
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 104, 111, 295
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 247
BspPI GGATC 2 cut(s) 112, 119
BspQI GCTCTTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 74, 225
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 3 cut(s) 104, 111, 295
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 153, 230
Bst6I CTCTTC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 3 cut(s) 107, 114, 298
BstMBI GATC 3 cut(s) 104, 111, 295
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 218
CviAII CATG 2 cut(s) 101, 124
CviJI RGCY 6 cut(s) 146, 203, 215, 224, 301, 324
CviKI_1 RGCY 6 cut(s) 146, 203, 215, 224, 301, 324
DdeI CTNAG 1 cut(s) 234
DpnI GATC 3 cut(s) 106, 113, 297
DpnII GATC 3 cut(s) 104, 111, 295
DraI TTTAAA 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 104, 127
FaiI YATR 4 cut(s) 11, 102, 125, 177
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 100, 123
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 334
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 2 cut(s) 284, 305
Hin1II CATG 2 cut(s) 104, 127
HinfI GANTC 2 cut(s) 55, 238
Hpy188I TCNGA 4 cut(s) 130, 138, 173, 237
HpyCH4III ACNGT 2 cut(s) 153, 230
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 24, 77, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 2 cut(s) 104, 127
Kzo9I GATC 3 cut(s) 104, 111, 295
LguI GCTCTTC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 55, 206, 287, 294
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 33
MaeI CTAG 1 cut(s) 334
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 106, 113, 297
MbiI CCGCTC 1 cut(s) 16
MboI GATC 3 cut(s) 104, 111, 295
MboII GAAGA 1 cut(s) 160
MluCI AATT 2 cut(s) 61, 193
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 3 cut(s) 102, 299, 314
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 100
NdeII GATC 3 cut(s) 104, 111, 295
NlaIII CATG 2 cut(s) 104, 127
PciSI GCTCTTC 1 cut(s) 11
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 55, 238
PkrI GCNGC 1 cut(s) 217
PspFI CCCAGC 2 cut(s) 280, 301
PvuII CAGCTG 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 104, 111, 295
SetI ASST 4 cut(s) 44, 87, 217, 303
SfaNI GCATC 1 cut(s) 33
SgeI CNNG 9 cut(s) 54, 82, 94, 113, 120, 136, 233, 293, 314
Sse9I AATT 2 cut(s) 61, 193
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 153, 230
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 107
TaqII GACCGA 1 cut(s) 222
TasI AATT 2 cut(s) 61, 193
TfiI GAWTC 2 cut(s) 55, 238
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 215
TspRI CASTG 1 cut(s) 225
XapI RAATTY 1 cut(s) 193
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.