Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

29887807 .. 29901058

Gene Structure 13252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG277400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3561 bp

ATGTGTCATGTGCTAGAGCCTAGAGGACAGTCTGGACAGTCCCTTTTATCACCTTTTCGAAACCACCACACTCCCATAAATCCGATTCTCTTAATTTTTAGCTACTTCTTCCCATATGCCTTCTCTCATTTCCCCTCTCCCTGCCAAAATTCCACATTCATGAAACCCAAACCCAGGCCCAAGCTCCGGAGCTCCAAATCCAAATCCAAATCCAAATCGGAGTCCAATTCCCTGGCCGTCACGGTGTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCGCTGAACTTCGTCGATTCGAGATCTGCATTCTCGGAGGGCCTGCCGGAGCTCACTTCGGCGCCGGAGATGGCCGGGAAAGACGGCGTACGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCGCCGAGACTGTCTCCATTGCCCGATCTGCCCTCGCCCAGCAAGAAGGCAAGGGGTAGTTTGGGAAATGTGGCTATCGACAATTGTGTGAGGAGGTCGCCCAGACTTGCGTCTGCTGACGTGGAAGCCGGAAAGGGCAAAACCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATGAAGAGAAAGATACTGAGAAGTTTACAAGGAGATCTCCGAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTACCCAAAAGTCTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGACGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCAAAGGAGAAATGTCCTTCTAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCAAATTCCAATTCAAATTCTTCCATTGAATTGTCTGGTTCAAAAGGTAAGGGTTCTTCCAAGAAGATTATGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGATGCTTGAGGCAATCTCCAATAAGAGCGACATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTAGAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCAACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGGTTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAACGATGATGGAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCGAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTGCGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGTCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTCGATAATGTAGAGAGAACTAATCGATCTAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGACTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTTACTGCAAAGAGAGTATACAAGATTTTGTAAGAAATGGGAAGAAGCTGAAAATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAATGTCGACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCTCGTCCCACTCATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGATCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCGTTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGATGATTATGCACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTAGGAAGAGACAATGTGGCTCGGAGGGATTTGACTGAAAAGCAGTCAGTGTTGCCATCTGGAAAGCCATTGGTACCAGACTATGCCTTTACTTTTGAACAAGGGAAGTCTAAAAGACCATTTGCGAGGTTATGGTGGGATGAGACTGTGGCCACTGTATTGACATTCCCAAGTTGTCACAACCAGGTTGTATTACATCCTGAGCAGGACCGAATTCTCACTCTACGAGAATGTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTATGTGGCACAGTTAGAGAGAGGTACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTCGCGCGAGCTTTAGGATATGCATTGGGATTGGCAGTCCACAAATCCAGCGGGAATGAACCACTGCTGACTCTCCCCCAAAATTTCTCTCATTCAAACTATTTTCAATTCACAGAAATTTTTCCCCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1186

Amino Acids

134.35

Weight (kDa)

8.58

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	471 - 578	1e-15	BAH domain
Chromo	PF00385	726 - 780	2e-09	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	785 - 1150	1.2e-34	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	3175
AccB1I	GGYRCC	3 cut(s)	343, 1931, 3175
AccI	GTMKAC	3 cut(s)	1811, 2326, 2448
AccII	CGCG	2 cut(s)	3431, 3433
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	5 cut(s)	284, 1285, 2397, 2762, 3477
AclWI	GGATC	4 cut(s)	595, 1238, 1475, 2968
AcoI	YGGCCR	4 cut(s)	234, 281, 354, 3252
AcsI	RAATTY	9 cut(s)	148, 910, 922, 2174, 2992, 3076, 3315, 3508, 3543
AcuI	CTGAAG	1 cut(s)	1393
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	5 cut(s)	372, 1434, 2151, 3177, 3395
AfiI	CCNNNNNNNGG	7 cut(s)	174, 186, 898, 1664, 2300, 2375, 2414
AflII	CTTAAG	1 cut(s)	2305
AflIII	ACRYGT	1 cut(s)	2026
AhlI	ACTAGT	1 cut(s)	1226
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	7 cut(s)	173, 231, 737, 2186, 2374, 3091, 3285
Alw21I	GWGCWC	4 cut(s)	194, 336, 390, 2695
AlwI	GGATC	4 cut(s)	595, 1238, 1475, 2968
AlwNI	CAGNNNCTG	1 cut(s)	767
Aor13HI	TCCGGA	1 cut(s)	186
ApaI	GGGCCC	2 cut(s)	1972, 2405
ApeKI	GCWGC	4 cut(s)	902, 905, 2042, 2639
ApoI	RAATTY	9 cut(s)	148, 910, 922, 2174, 2992, 3076, 3315, 3508, 3543
Asp700I	GAANNNNTTC	2 cut(s)	1187, 3546
Asp718I	GGTACC	1 cut(s)	3175
AspA2I	CCTAGG	1 cut(s)	1658
AspLEI	GCGC	4 cut(s)	346, 2590, 2778, 3433
AspS9I	GGNCC	9 cut(s)	177, 322, 741, 1968, 1969, 2401, 2402, 3085, 3310
AsuC2I	CCSGG	2 cut(s)	358, 3083
AsuHPI	GGTGA	4 cut(s)	42, 768, 1647, 2222
AsuII	TTCGAA	2 cut(s)	58, 1631
AvaII	GGWCC	2 cut(s)	3085, 3310
AvrII	CCTAGG	1 cut(s)	1658
BaeGI	GKGCMC	2 cut(s)	1972, 2405
BalI	TGGCCA	1 cut(s)	3254
BanI	GGYRCC	3 cut(s)	343, 1931, 3175
BanII	GRGCYC	4 cut(s)	194, 336, 1972, 2405
BarI	GAAGNNNNNNTAC	2 cut(s)	946, 978
BauI	CACGAG	2 cut(s)	2808, 3042
BbsI	GAAGAC	1 cut(s)	2482
Bbv12I	GWGCWC	4 cut(s)	194, 336, 390, 2695
BbvI	GCAGC	4 cut(s)	914, 917, 2029, 2626
BceAI	ACGGC	3 cut(s)	221, 296, 382
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	7 cut(s)	175, 233, 739, 2188, 2376, 3093, 3287
BcnI	CCSGG	2 cut(s)	358, 3083
BcuI	ACTAGT	1 cut(s)	1226
BfmI	CTRYAG	2 cut(s)	759, 1596
BfoI	RGCGCY	1 cut(s)	347
BfrI	CTTAAG	1 cut(s)	2305
BglII	AGATCT	5 cut(s)	305, 632, 875, 1307, 1885
BisI	GCNGC	5 cut(s)	284, 903, 906, 2043, 2640
BlnI	CCTAGG	1 cut(s)	1658
BlsI	GCNGC	5 cut(s)	285, 904, 907, 2044, 2641
Bme1390I	CCNGG	9 cut(s)	175, 233, 358, 739, 2188, 2376, 3083, 3093, 3287
Bme18I	GGWCC	2 cut(s)	3085, 3310
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	9 cut(s)	177, 322, 741, 1968, 1969, 2401, 2402, 3085, 3310
BmrFI	CCNGG	9 cut(s)	175, 233, 358, 739, 2188, 2376, 3083, 3093, 3287
BmrI	ACTGGG	1 cut(s)	1842
BmsI	GCATC	4 cut(s)	1010, 1413, 2371, 2830
BmuI	ACTGGG	1 cut(s)	1842
BoxI	GACNNNNGTC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	2482
BplI	GAGNNNNNCTC	4 cut(s)	403, 435, 1018, 1050
Bpu10I	CCTNAGC	1 cut(s)	3303
Bpu14I	TTCGAA	2 cut(s)	58, 1631
BpuEI	CTTGAG	3 cut(s)	1045, 1368, 2128
BpuMI	CCSGG	2 cut(s)	358, 3083
Bsa29I	ATCGAT	2 cut(s)	2125, 3010
BsaBI	GATNNNNATC	2 cut(s)	2131, 2799
BsaHI	GRCGYC	1 cut(s)	344
BsaI	GGTCTC	2 cut(s)	985, 2132
BsaWI	WCCGGW	2 cut(s)	186, 390
Bsc4I	CCNNNNNNNGG	7 cut(s)	174, 186, 898, 1664, 2300, 2375, 2414
Bse1I	ACTGG	3 cut(s)	1848, 1921, 2759
Bse3DI	GCAATG	3 cut(s)	422, 1683, 2785
Bse8I	GATNNNNATC	2 cut(s)	2131, 2799
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	7 cut(s)	175, 233, 739, 2188, 2376, 3093, 3287
BseCI	ATCGAT	2 cut(s)	2125, 3010
BseGI	GGATG	7 cut(s)	604, 2014, 2386, 2467, 2695, 3247, 3298
BseJI	GATNNNNATC	2 cut(s)	2131, 2799
BseLI	CCNNNNNNNGG	7 cut(s)	174, 186, 898, 1664, 2300, 2375, 2414
BseMI	GCAATG	3 cut(s)	422, 1683, 2785
BseMII	CTCAG	8 cut(s)	389, 606, 1095, 1140, 2546, 2605, 2694, 3294
BseNI	ACTGG	3 cut(s)	1848, 1921, 2759
BseRI	GAGGAG	1 cut(s)	511
BseSI	GKGCMC	2 cut(s)	1972, 2405
BseX3I	CGGCCG	1 cut(s)	281
BseXI	GCAGC	4 cut(s)	914, 917, 2029, 2626
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	2624
Bsh1236I	CGCG	2 cut(s)	3431, 3433
Bsh1285I	CGRYCG	1 cut(s)	284
BshNI	GGYRCC	3 cut(s)	343, 1931, 3175
BshVI	ATCGAT	2 cut(s)	2125, 3010
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	4 cut(s)	194, 336, 390, 2695
BsiSI	CCGG	7 cut(s)	187, 329, 347, 357, 391, 534, 3082
BsiWI	CGTACG	1 cut(s)	370
BslFI	GGGAC	4 cut(s)	25, 1830, 2712, 3098
BslI	CCNNNNNNNGG	7 cut(s)	174, 186, 898, 1664, 2300, 2375, 2414
BsmFI	GGGAC	4 cut(s)	25, 1830, 2712, 3098
BsmI	GAATGC	2 cut(s)	311, 1376
Bso31I	GGTCTC	2 cut(s)	985, 2132
Bsp119I	TTCGAA	2 cut(s)	58, 1631
Bsp120I	GGGCCC	2 cut(s)	1968, 2401
Bsp1286I	GDGCHC	6 cut(s)	194, 336, 390, 1972, 2405, 2695
Bsp13I	TCCGGA	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	1432
BspACI	CCGC	5 cut(s)	284, 1285, 2397, 2762, 3477
BspCNI	CTCAG	8 cut(s)	390, 607, 1096, 1141, 2547, 2604, 2695, 3295
BspDI	ATCGAT	2 cut(s)	2125, 3010
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	3431, 3433
BspHI	TCATGA	3 cut(s)	159, 1567, 2734
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	4 cut(s)	595, 1238, 1475, 2968
BspQI	GCTCTTC	1 cut(s)	2832
BspT104I	TTCGAA	2 cut(s)	58, 1631
BspT107I	GGYRCC	3 cut(s)	343, 1931, 3175
BspTI	CTTAAG	1 cut(s)	2305
BspTNI	GGTCTC	2 cut(s)	985, 2132
BsrDI	GCAATG	3 cut(s)	422, 1683, 2785
BsrGI	TGTACA	1 cut(s)	1432
BsrI	ACTGG	3 cut(s)	1848, 1921, 2759
BssNAI	GTATAC	1 cut(s)	2327
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	2 cut(s)	2808, 3042
BssT1I	CCWWGG	4 cut(s)	1658, 1746, 1927, 2413
Bst1107I	GTATAC	1 cut(s)	2327
Bst2BI	CACGAG	2 cut(s)	2808, 3042
Bst2UI	CCWGG	7 cut(s)	175, 233, 739, 2188, 2376, 3093, 3287
Bst6I	CTCTTC	4 cut(s)	597, 1292, 2832, 3103
BstACI	GRCGYC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	2305
BstAUI	TGTACA	1 cut(s)	1432
BstBI	TTCGAA	2 cut(s)	58, 1631
BstC8I	GCNNGC	4 cut(s)	265, 326, 2231, 3435
BstEII	GGTNACC	1 cut(s)	2210
BstENI	CCTNNNNNAGG	2 cut(s)	1662, 2412
BstF5I	GGATG	7 cut(s)	604, 2014, 2386, 2467, 2695, 3247, 3298
BstFNI	CGCG	2 cut(s)	3431, 3433
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	4 cut(s)	346, 2590, 2778, 3433
BstMCI	CGRYCG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 2409, 2433
BstNI	CCWGG	7 cut(s)	175, 233, 739, 2188, 2376, 3093, 3287
BstNSI	RCATGY	3 cut(s)	278, 1133, 2030
BstPAI	GACNNNNGTC	1 cut(s)	514
BstPI	GGTNACC	1 cut(s)	2210
BstSCI	CCNGG	9 cut(s)	173, 231, 356, 737, 2186, 2374, 3081, 3091, 3285
BstSFI	CTRYAG	2 cut(s)	759, 1596
BstSLI	GKGCMC	2 cut(s)	1972, 2405
BstUI	CGCG	2 cut(s)	3431, 3433
BstV1I	GCAGC	4 cut(s)	914, 917, 2029, 2626
BstV2I	GAAGAC	1 cut(s)	2482
BstX2I	RGATCY	7 cut(s)	305, 632, 875, 1243, 1307, 1885, 2960
BstXI	CCANNNNNNTGG	2 cut(s)	232, 1834
BstYI	RGATCY	7 cut(s)	305, 632, 875, 1243, 1307, 1885, 2960
BstZ17I	GTATAC	1 cut(s)	2327
BstZI	CGGCCG	1 cut(s)	281
Bsu15I	ATCGAT	2 cut(s)	2125, 3010
BsuTUI	ATCGAT	2 cut(s)	2125, 3010
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	7 cut(s)	604, 2014, 2386, 2467, 2695, 3247, 3298
BtsI	GCAGTG	2 cut(s)	2281, 3488
BtsIMutI	CAGTG	7 cut(s)	1523, 1752, 1984, 2281, 3156, 3255, 3488
Cac8I	GCNNGC	4 cut(s)	265, 326, 2231, 3435
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	3 cut(s)	159, 1567, 2734
CfoI	GCGC	4 cut(s)	346, 2590, 2778, 3433
Cfr13I	GGNCC	9 cut(s)	177, 322, 741, 1968, 1969, 2401, 2402, 3085, 3310
ClaI	ATCGAT	2 cut(s)	2125, 3010
CseI	GACGC	3 cut(s)	504, 773, 1677
CsiI	ACCWGGT	2 cut(s)	3091, 3285
Csp6I	GTAC	5 cut(s)	371, 1433, 2150, 3176, 3394
CviQI	GTAC	5 cut(s)	371, 1433, 2150, 3176, 3394
DinI	GGCGCC	1 cut(s)	345
DraI	TTTAAA	1 cut(s)	1002
EaeI	YGGCCR	4 cut(s)	234, 281, 354, 3252
EagI	CGGCCG	1 cut(s)	281
Eam1104I	CTCTTC	4 cut(s)	597, 1292, 2832, 3103
EarI	CTCTTC	4 cut(s)	597, 1292, 2832, 3103
EciI	GGCGGA	1 cut(s)	2751
Ecl136II	GAGCTC	2 cut(s)	192, 334
EclXI	CGGCCG	1 cut(s)	281
Eco130I	CCWWGG	4 cut(s)	1658, 1746, 1927, 2413
Eco24I	GRGCYC	4 cut(s)	194, 336, 1972, 2405
Eco31I	GGTCTC	2 cut(s)	985, 2132
Eco32I	GATATC	2 cut(s)	1653, 2200
Eco47I	GGWCC	2 cut(s)	3085, 3310
Eco52I	CGGCCG	1 cut(s)	281
Eco53kI	GAGCTC	2 cut(s)	192, 334
Eco57I	CTGAAG	1 cut(s)	1393
Eco91I	GGTNACC	1 cut(s)	2210
EcoICRI	GAGCTC	2 cut(s)	192, 334
EcoNI	CCTNNNNNAGG	2 cut(s)	1662, 2412
EcoO109I	RGGNCCY	4 cut(s)	322, 1969, 2401, 3085
EcoO65I	GGTNACC	1 cut(s)	2210
EcoRI	GAATTC	1 cut(s)	3315
EcoRII	CCWGG	7 cut(s)	173, 231, 737, 2186, 2374, 3091, 3285
EcoRV	GATATC	2 cut(s)	1653, 2200
EcoT14I	CCWWGG	4 cut(s)	1658, 1746, 1927, 2413
EcoT22I	ATGCAT	1 cut(s)	3451
EcoT38I	GRGCYC	4 cut(s)	194, 336, 1972, 2405
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
ErhI	CCWWGG	4 cut(s)	1658, 1746, 1927, 2413
FalI	AAGNNNNNCTT	2 cut(s)	2814, 2846
FaqI	GGGAC	4 cut(s)	25, 1830, 2712, 3098
FauI	CCCGC	2 cut(s)	2390, 3470
FauNDI	CATATG	1 cut(s)	115
FblI	GTMKAC	3 cut(s)	1811, 2326, 2448
Fnu4HI	GCNGC	5 cut(s)	284, 903, 906, 2043, 2640
FokI	GGATG	7 cut(s)	611, 2001, 2393, 2474, 2682, 3254, 3285
FriOI	GRGCYC	4 cut(s)	194, 336, 1972, 2405
Fsp4HI	GCNGC	5 cut(s)	284, 903, 906, 2043, 2640
GlaI	GCGC	4 cut(s)	345, 2589, 2777, 3432
GluI	GCNGC	5 cut(s)	284, 903, 906, 2043, 2640
GsaI	CCCAGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	347
HapII	CCGG	7 cut(s)	187, 329, 347, 357, 391, 534, 3082
HgaI	GACGC	3 cut(s)	504, 773, 1677
HhaI	GCGC	4 cut(s)	346, 2590, 2778, 3433
Hin1I	GRCGYC	1 cut(s)	344
Hin6I	GCGC	4 cut(s)	344, 2588, 2776, 3431
HinP1I	GCGC	4 cut(s)	344, 2588, 2776, 3431
HincII	GTYRAC	4 cut(s)	847, 1914, 1951, 2449
HindII	GTYRAC	4 cut(s)	847, 1914, 1951, 2449
HindIII	AAGCTT	1 cut(s)	1999
HpaI	GTTAAC	1 cut(s)	1951
HpaII	CCGG	7 cut(s)	187, 329, 347, 357, 391, 534, 3082
HphI	GGTGA	4 cut(s)	42, 768, 1647, 2222
Hpy99I	CGWCG	4 cut(s)	254, 272, 299, 1693
HpyCH4IV	ACGT	3 cut(s)	525, 1179, 1365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 2409, 2433
HpySE526I	ACGT	3 cut(s)	525, 1179, 1365
Hsp92I	GRCGYC	1 cut(s)	344
HspAI	GCGC	4 cut(s)	344, 2588, 2776, 3431
KasI	GGCGCC	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	3179
KspAI	GTTAAC	1 cut(s)	1951
LguI	GCTCTTC	1 cut(s)	2832
LmnI	GCTCC	8 cut(s)	189, 189, 197, 331, 385, 393, 1770, 3071
Lsp1109I	GCAGC	4 cut(s)	914, 917, 2029, 2626
LweI	GCATC	4 cut(s)	1010, 1413, 2371, 2830
MabI	ACCWGGT	2 cut(s)	3091, 3285
MaeII	ACGT	3 cut(s)	525, 1179, 1365
MaeIII	GTNAC	8 cut(s)	238, 1642, 1750, 1957, 2210, 2276, 2309, 3278
MfeI	CAATTG	5 cut(s)	487, 1097, 1292, 1399, 2295
MflI	RGATCY	7 cut(s)	305, 632, 875, 1243, 1307, 1885, 2960
MhlI	GDGCHC	6 cut(s)	194, 336, 390, 1972, 2405, 2695
MlsI	TGGCCA	1 cut(s)	3254
MluNI	TGGCCA	1 cut(s)	3254
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	5 cut(s)	230, 1309, 1817, 2444, 3490
MmeI	TCCRAC	4 cut(s)	1537, 2237, 2938, 3385
Mox20I	TGGCCA	1 cut(s)	3254
Mph1103I	ATGCAT	1 cut(s)	3451
MroI	TCCGGA	1 cut(s)	186
MroXI	GAANNNNTTC	2 cut(s)	1187, 3546
MscI	TGGCCA	1 cut(s)	3254
MseI	TTAA	8 cut(s)	92, 1001, 1065, 1670, 1950, 2003, 2306, 2513
MslI	CAYNNNNRTG	3 cut(s)	158, 2163, 3030
Msp20I	TGGCCA	1 cut(s)	3254
MspA1I	CMGCKG	2 cut(s)	286, 3477
MspCI	CTTAAG	1 cut(s)	2305
MspI	CCGG	7 cut(s)	187, 329, 347, 357, 391, 534, 3082
MspR9I	CCNGG	9 cut(s)	175, 233, 358, 739, 2188, 2376, 3083, 3093, 3287
MunI	CAATTG	5 cut(s)	487, 1097, 1292, 1399, 2295
Mva1269I	GAATGC	2 cut(s)	311, 1376
MvaI	CCWGG	7 cut(s)	175, 233, 739, 2188, 2376, 3093, 3287
MvnI	CGCG	2 cut(s)	3431, 3433
MwoI	GCNNNNNNNGC	3 cut(s)	433, 2409, 2433
NarI	GGCGCC	1 cut(s)	344
NciI	CCSGG	2 cut(s)	358, 3083
NdeI	CATATG	1 cut(s)	115
NmeAIII	GCCGAG	2 cut(s)	435, 2071
NmuCI	GTSAC	6 cut(s)	238, 1750, 1957, 2210, 2276, 3278
NsiI	ATGCAT	1 cut(s)	3451
NspI	RCATGY	3 cut(s)	278, 1133, 2030
NspV	TTCGAA	2 cut(s)	58, 1631
PagI	TCATGA	3 cut(s)	159, 1567, 2734
PciI	ACATGT	1 cut(s)	2026
PciSI	GCTCTTC	1 cut(s)	2832
PctI	GAATGC	2 cut(s)	311, 1376
PdmI	GAANNNNTTC	2 cut(s)	1187, 3546
Pfl23II	CGTACG	1 cut(s)	370
PfoI	TCCNGGA	2 cut(s)	2186, 3081
PkrI	GCNGC	5 cut(s)	285, 904, 907, 2044, 2641
PleI	GAGTC	5 cut(s)	229, 1308, 1816, 2444, 3490
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	5 cut(s)	229, 1308, 1816, 2444, 3490
PpuMI	RGGWCCY	1 cut(s)	3085
PscI	ACATGT	1 cut(s)	2026
PshAI	GACNNNNGTC	1 cut(s)	514
Psp124BI	GAGCTC	2 cut(s)	194, 336
Psp5II	RGGWCCY	1 cut(s)	3085
Psp6I	CCWGG	7 cut(s)	173, 231, 737, 2186, 2374, 3091, 3285
PspEI	GGTNACC	1 cut(s)	2210
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	7 cut(s)	173, 231, 737, 2186, 2374, 3091, 3285
PspLI	CGTACG	1 cut(s)	370
PspOMI	GGGCCC	2 cut(s)	1968, 2401
PspPI	GGNCC	9 cut(s)	177, 322, 741, 1968, 1969, 2401, 2402, 3085, 3310
PspPPI	RGGWCCY	1 cut(s)	3085
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	7 cut(s)	305, 632, 875, 1243, 1307, 1885, 2960
RsaI	GTAC	5 cut(s)	372, 1434, 2151, 3177, 3395
RsaNI	GTAC	5 cut(s)	371, 1433, 2150, 3176, 3394
RseI	CAYNNNNRTG	3 cut(s)	158, 2163, 3030
SacI	GAGCTC	2 cut(s)	194, 336
SalI	GTCGAC	1 cut(s)	2447
SapI	GCTCTTC	1 cut(s)	2832
SaqAI	TTAA	8 cut(s)	92, 1001, 1065, 1670, 1950, 2003, 2306, 2513
SatI	GCNGC	5 cut(s)	284, 903, 906, 2043, 2640
Sau96I	GGNCC	9 cut(s)	177, 322, 741, 1968, 1969, 2401, 2402, 3085, 3310
SchI	GAGTC	5 cut(s)	230, 1309, 1817, 2444, 3490
ScrFI	CCNGG	9 cut(s)	175, 233, 358, 739, 2188, 2376, 3083, 3093, 3287
SduI	GDGCHC	6 cut(s)	194, 336, 390, 1972, 2405, 2695
SexAI	ACCWGGT	2 cut(s)	3091, 3285
SfaNI	GCATC	4 cut(s)	1010, 1413, 2371, 2830
SfcI	CTRYAG	2 cut(s)	759, 1596
SfoI	GGCGCC	1 cut(s)	345
SfuI	TTCGAA	2 cut(s)	58, 1631
SinI	GGWCC	2 cut(s)	3085, 3310
SmiMI	CAYNNNNRTG	3 cut(s)	158, 2163, 3030
SmlI	CTYRAG	4 cut(s)	1024, 1383, 2143, 2305
SmoI	CTYRAG	4 cut(s)	1024, 1383, 2143, 2305
SpeI	ACTAGT	1 cut(s)	1226
SsiI	CCGC	5 cut(s)	284, 1285, 2397, 2762, 3477
SspDI	GGCGCC	1 cut(s)	343
SstI	GAGCTC	2 cut(s)	194, 336
StyD4I	CCNGG	9 cut(s)	173, 231, 356, 737, 2186, 2374, 3081, 3091, 3285
StyI	CCWWGG	4 cut(s)	1658, 1746, 1927, 2413
TaiI	ACGT	3 cut(s)	528, 1182, 1368
TaqII	GACCGA	1 cut(s)	3327
TatI	WGTACW	1 cut(s)	1432
TauI	GCSGC	1 cut(s)	286
Tru1I	TTAA	8 cut(s)	92, 1001, 1065, 1670, 1950, 2003, 2306, 2513
Tru9I	TTAA	8 cut(s)	92, 1001, 1065, 1670, 1950, 2003, 2306, 2513
TscAI	CASTG	7 cut(s)	1523, 1759, 1984, 2281, 3156, 3262, 3495
TseFI	GTSAC	6 cut(s)	238, 1750, 1957, 2210, 2276, 3278
TseI	GCWGC	4 cut(s)	902, 905, 2042, 2639
Tsp45I	GTSAC	6 cut(s)	238, 1750, 1957, 2210, 2276, 3278
TspRI	CASTG	7 cut(s)	1523, 1759, 1984, 2281, 3156, 3262, 3495
Vha464I	CTTAAG	1 cut(s)	2305
VpaK11BI	GGWCC	2 cut(s)	3085, 3310
XagI	CCTNNNNNAGG	2 cut(s)	1662, 2412
XapI	RAATTY	9 cut(s)	148, 910, 922, 2174, 2992, 3076, 3315, 3508, 3543
XbaI	TCTAGA	1 cut(s)	2129
XceI	RCATGY	3 cut(s)	278, 1133, 2030
XcmI	CCANNNNNNNNNTGG	2 cut(s)	973, 2420
XmaJI	CCTAGG	1 cut(s)	1658
XmiI	GTMKAC	3 cut(s)	1811, 2326, 2448
XmnI	GAANNNNTTC	2 cut(s)	1187, 3546
Zsp2I	ATGCAT	1 cut(s)	3451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.