Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

28038941 .. 28052225

Gene Structure 13285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2958 bp

ATGAAACCCAAACCCAAACCCAGGCCCAAGCTCCGGAGCTCCAAATCCAAATCCAAATCCAAATCGGAGTCCAATTCCCTGGCCGTCACGGTGTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCGCTGAACTTCGTCGATTCGAGATCTGCATTCTCGGAGGGCCTGCCGGAGCTCACTTCGGCGCTGGAGATGGCCGGGAAGGACGGCGTACGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCCCCGAGACTGTCTCCATTGTCCGATCTGCCCTCGCCCAGCAAGAAGGCAAGGGGTAGTTTGGGAAATGCGGCTATTGACAATTGTGTGAGGAGGTCGCCCAGACTTGCGTCTGCTGACGTGGAAGCCGGAAAGGGCAAAACCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATGAAGAGAAAGATACTGAGAAGTTTACAAGGAGATCTCCGAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGACGCTGAAACATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCAAAGGAGAAATGTCCTTCTAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCAAATTCCAATTCAAATTCTTCCATTGAATTGTCTGGTTCAAAAGGTAAGGGTTCTTCCAAGAAGATTATGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGATGCTTGAGGCAATCTCCAATAAGAGCGACATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGGCTGAAACTAGAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCAACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGGTTGGCGGTATCAGTTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAACGATGATGGAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCGAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTGCGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGTCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTCGATAATGTAGAGAGAACTAATCGATCTAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGCATGAGACTGAATTTGAAATTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATCCAAGATTTTGTAAGAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAATGTCGACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCCCGTCCCACACATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCGTTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGATGATTATGCACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

985

Amino Acids

111.58

Weight (kDa)

8.53

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	420 - 527	7.9e-16	BAH domain
Chromo	PF00385	677 - 731	6.7e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	737 - 918	2.1e-19	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1778
AccI	GTMKAC	2 cut(s)	1658, 2301
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	5 cut(s)	131, 323, 1132, 2250, 2615
AclWI	GGATC	4 cut(s)	442, 1085, 1322, 2821
AcoI	YGGCCR	3 cut(s)	81, 128, 201
AcsI	RAATTY	6 cut(s)	757, 769, 2027, 2034, 2844, 2928
AcuI	CTGAAG	2 cut(s)	1240, 2231
AfaI	GTAC	3 cut(s)	219, 1281, 1998
AfiI	CCNNNNNNNGG	7 cut(s)	21, 33, 745, 1511, 2153, 2228, 2267
AflII	CTTAAG	1 cut(s)	2158
AflIII	ACRYGT	1 cut(s)	1873
AhlI	ACTAGT	1 cut(s)	1073
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	6 cut(s)	20, 78, 584, 2039, 2227, 2943
Alw21I	GWGCWC	4 cut(s)	41, 183, 237, 2548
Alw26I	GTCTC	7 cut(s)	253, 270, 832, 992, 1683, 1979, 2015
AlwI	GGATC	4 cut(s)	442, 1085, 1322, 2821
AlwNI	CAGNNNCTG	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	33
ApaI	GGGCCC	2 cut(s)	1819, 2258
ApeKI	GCWGC	4 cut(s)	749, 752, 1889, 2492
ApoI	RAATTY	6 cut(s)	757, 769, 2027, 2034, 2844, 2928
Asp700I	GAANNNNTTC	1 cut(s)	1034
AspA2I	CCTAGG	1 cut(s)	1505
AspLEI	GCGC	3 cut(s)	193, 2443, 2631
AspS9I	GGNCC	9 cut(s)	24, 169, 252, 588, 1815, 1816, 2254, 2255, 2937
AsuC2I	CCSGG	2 cut(s)	205, 2935
AsuHPI	GGTGA	3 cut(s)	615, 1494, 2075
AsuII	TTCGAA	1 cut(s)	1478
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	252, 2937
AvrII	CCTAGG	1 cut(s)	1505
AxyI	CCTNAGG	1 cut(s)	951
BaeGI	GKGCMC	2 cut(s)	1819, 2258
BanI	GGYRCC	1 cut(s)	1778
BanII	GRGCYC	4 cut(s)	41, 183, 1819, 2258
BarI	GAAGNNNNNNTAC	2 cut(s)	793, 825
BauI	CACGAG	2 cut(s)	2661, 2894
BbsI	GAAGAC	2 cut(s)	2335, 2658
Bbv12I	GWGCWC	4 cut(s)	41, 183, 237, 2548
BbvI	GCAGC	4 cut(s)	761, 764, 1876, 2479
BccI	CCATC	9 cut(s)	193, 854, 1116, 1181, 1334, 2380, 2705, 2800, 2867
BceAI	ACGGC	3 cut(s)	68, 143, 229
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	6 cut(s)	22, 80, 586, 2041, 2229, 2945
BciVI	GTATCC	1 cut(s)	2189
BcnI	CCSGG	2 cut(s)	205, 2935
BcoDI	GTCTC	7 cut(s)	253, 270, 832, 992, 1683, 1979, 2015
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	9 cut(s)	627, 729, 741, 963, 1074, 1506, 1977, 2480, 2669
BfmI	CTRYAG	2 cut(s)	606, 1443
BfoI	RGCGCY	1 cut(s)	194
BfrI	CTTAAG	1 cut(s)	2158
BfuI	GTATCC	1 cut(s)	2189
BglII	AGATCT	6 cut(s)	152, 479, 722, 1154, 1732, 2214
BisI	GCNGC	6 cut(s)	131, 324, 750, 753, 1890, 2493
BlnI	CCTAGG	1 cut(s)	1505
BlsI	GCNGC	6 cut(s)	132, 325, 751, 754, 1891, 2494
Bme1390I	CCNGG	8 cut(s)	22, 80, 205, 586, 2041, 2229, 2935, 2945
Bme18I	GGWCC	2 cut(s)	252, 2937
BmeT110I	CYCGRG	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	9 cut(s)	24, 169, 252, 588, 1815, 1816, 2254, 2255, 2937
BmiI	GGNNCC	9 cut(s)	242, 254, 1619, 1780, 1817, 2145, 2255, 2256, 2938
BmrFI	CCNGG	8 cut(s)	22, 80, 205, 586, 2041, 2229, 2935, 2945
BmrI	ACTGGG	1 cut(s)	1689
BmsI	GCATC	4 cut(s)	857, 1260, 2224, 2683
BmuI	ACTGGG	1 cut(s)	1689
BoxI	GACNNNNGTC	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	2335, 2658
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 865, 897
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	1478
BpuEI	CTTGAG	3 cut(s)	892, 1215, 1975
BpuMI	CCSGG	2 cut(s)	205, 2935
Bsa29I	ATCGAT	2 cut(s)	1972, 2862
BsaBI	GATNNNNATC	1 cut(s)	1978
BsaI	GGTCTC	2 cut(s)	832, 1979
BsaWI	WCCGGW	2 cut(s)	33, 237
Bsc4I	CCNNNNNNNGG	7 cut(s)	21, 33, 745, 1511, 2153, 2228, 2267
Bse1I	ACTGG	3 cut(s)	1695, 1768, 2612
Bse21I	CCTNAGG	1 cut(s)	951
Bse3DI	GCAATG	2 cut(s)	1530, 2638
Bse8I	GATNNNNATC	1 cut(s)	1978
BseAI	TCCGGA	1 cut(s)	33
BseBI	CCWGG	6 cut(s)	22, 80, 586, 2041, 2229, 2945
BseCI	ATCGAT	2 cut(s)	1972, 2862
BseGI	GGATG	5 cut(s)	451, 1861, 2239, 2320, 2548
BseJI	GATNNNNATC	1 cut(s)	1978
BseLI	CCNNNNNNNGG	7 cut(s)	21, 33, 745, 1511, 2153, 2228, 2267
BseMI	GCAATG	2 cut(s)	1530, 2638
BseMII	CTCAG	7 cut(s)	236, 453, 942, 987, 2399, 2458, 2547
BseNI	ACTGG	3 cut(s)	1695, 1768, 2612
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	1819, 2258
BseX3I	CGGCCG	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	761, 764, 1876, 2479
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	2477
Bsh1285I	CGRYCG	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	1778
BshVI	ATCGAT	2 cut(s)	1972, 2862
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	4 cut(s)	41, 183, 237, 2548
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	6 cut(s)	34, 176, 204, 238, 381, 2934
BsiWI	CGTACG	1 cut(s)	217
BslFI	GGGAC	4 cut(s)	238, 1677, 2565, 2950
BslI	CCNNNNNNNGG	7 cut(s)	21, 33, 745, 1511, 2153, 2228, 2267
BsmAI	GTCTC	7 cut(s)	253, 270, 832, 992, 1683, 1979, 2015
BsmFI	GGGAC	4 cut(s)	238, 1677, 2565, 2950
BsmI	GAATGC	2 cut(s)	158, 1223
Bso31I	GGTCTC	2 cut(s)	832, 1979
BsoBI	CYCGRG	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	1478
Bsp120I	GGGCCC	2 cut(s)	1815, 2254
Bsp1286I	GDGCHC	6 cut(s)	41, 183, 237, 1819, 2258, 2548
Bsp13I	TCCGGA	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	1279
BspACI	CCGC	5 cut(s)	131, 323, 1132, 2250, 2615
BspCNI	CTCAG	7 cut(s)	237, 454, 943, 988, 2400, 2457, 2548
BspDI	ATCGAT	2 cut(s)	1972, 2862
BspEI	TCCGGA	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	1414
BspLI	GGNNCC	9 cut(s)	242, 254, 1619, 1780, 1817, 2145, 2255, 2256, 2938
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	4 cut(s)	442, 1085, 1322, 2821
BspQI	GCTCTTC	1 cut(s)	2685
BspT104I	TTCGAA	1 cut(s)	1478
BspT107I	GGYRCC	1 cut(s)	1778
BspTI	CTTAAG	1 cut(s)	2158
BspTNI	GGTCTC	2 cut(s)	832, 1979
BsrDI	GCAATG	2 cut(s)	1530, 2638
BsrGI	TGTACA	1 cut(s)	1279
BsrI	ACTGG	3 cut(s)	1695, 1768, 2612
BssSI	CACGAG	2 cut(s)	2661, 2894
BssT1I	CCWWGG	4 cut(s)	1505, 1593, 1774, 2266
Bst2BI	CACGAG	2 cut(s)	2661, 2894
Bst2UI	CCWGG	6 cut(s)	22, 80, 586, 2041, 2229, 2945
Bst4CI	ACNGT	8 cut(s)	91, 264, 1163, 1390, 1444, 1691, 1826, 1941
Bst6I	CTCTTC	3 cut(s)	444, 1139, 2685
BstAFI	CTTAAG	1 cut(s)	2158
BstAUI	TGTACA	1 cut(s)	1279
BstBI	TTCGAA	1 cut(s)	1478
BstC8I	GCNNGC	3 cut(s)	112, 173, 2084
BstEII	GGTNACC	1 cut(s)	2063
BstENI	CCTNNNNNAGG	2 cut(s)	1509, 2265
BstF5I	GGATG	5 cut(s)	451, 1861, 2239, 2320, 2548
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	3 cut(s)	193, 2443, 2631
BstMAI	GTCTC	7 cut(s)	253, 270, 832, 992, 1683, 1979, 2015
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	2262, 2286
BstNI	CCWGG	6 cut(s)	22, 80, 586, 2041, 2229, 2945
BstNSI	RCATGY	3 cut(s)	125, 980, 1877
BstPAI	GACNNNNGTC	1 cut(s)	361
BstPI	GGTNACC	1 cut(s)	2063
BstSCI	CCNGG	8 cut(s)	20, 78, 203, 584, 2039, 2227, 2933, 2943
BstSFI	CTRYAG	2 cut(s)	606, 1443
BstSLI	GKGCMC	2 cut(s)	1819, 2258
BstV1I	GCAGC	4 cut(s)	761, 764, 1876, 2479
BstV2I	GAAGAC	2 cut(s)	2335, 2658
BstX2I	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1732, 2214, 2813
BstXI	CCANNNNNNTGG	2 cut(s)	79, 1681
BstYI	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1732, 2214, 2813
BstZI	CGGCCG	1 cut(s)	128
Bsu15I	ATCGAT	2 cut(s)	1972, 2862
Bsu36I	CCTNAGG	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	2189
BsuTUI	ATCGAT	2 cut(s)	1972, 2862
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	5 cut(s)	451, 1861, 2239, 2320, 2548
BtsI	GCAGTG	1 cut(s)	2134
BtsIMutI	CAGTG	4 cut(s)	1370, 1599, 1831, 2134
Cac8I	GCNNGC	3 cut(s)	112, 173, 2084
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	1 cut(s)	1414
CfoI	GCGC	3 cut(s)	193, 2443, 2631
Cfr13I	GGNCC	9 cut(s)	24, 169, 252, 588, 1815, 1816, 2254, 2255, 2937
ClaI	ATCGAT	2 cut(s)	1972, 2862
CseI	GACGC	3 cut(s)	351, 620, 1524
CsiI	ACCWGGT	1 cut(s)	2943
Csp6I	GTAC	3 cut(s)	218, 1280, 1997
CviQI	GTAC	3 cut(s)	218, 1280, 1997
DraI	TTTAAA	1 cut(s)	849
EaeI	YGGCCR	3 cut(s)	81, 128, 201
EagI	CGGCCG	1 cut(s)	128
Eam1104I	CTCTTC	3 cut(s)	444, 1139, 2685
EarI	CTCTTC	3 cut(s)	444, 1139, 2685
EciI	GGCGGA	1 cut(s)	2604
Ecl136II	GAGCTC	2 cut(s)	39, 181
EclXI	CGGCCG	1 cut(s)	128
Eco130I	CCWWGG	4 cut(s)	1505, 1593, 1774, 2266
Eco24I	GRGCYC	4 cut(s)	41, 183, 1819, 2258
Eco31I	GGTCTC	2 cut(s)	832, 1979
Eco32I	GATATC	2 cut(s)	1500, 2053
Eco47I	GGWCC	2 cut(s)	252, 2937
Eco52I	CGGCCG	1 cut(s)	128
Eco53kI	GAGCTC	2 cut(s)	39, 181
Eco57I	CTGAAG	2 cut(s)	1240, 2231
Eco81I	CCTNAGG	1 cut(s)	951
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	2063
EcoICRI	GAGCTC	2 cut(s)	39, 181
EcoNI	CCTNNNNNAGG	2 cut(s)	1509, 2265
EcoO109I	RGGNCCY	5 cut(s)	169, 252, 1816, 2254, 2937
EcoO65I	GGTNACC	1 cut(s)	2063
EcoRII	CCWGG	6 cut(s)	20, 78, 584, 2039, 2227, 2943
EcoRV	GATATC	2 cut(s)	1500, 2053
EcoT14I	CCWWGG	4 cut(s)	1505, 1593, 1774, 2266
EcoT38I	GRGCYC	4 cut(s)	41, 183, 1819, 2258
ErhI	CCWWGG	4 cut(s)	1505, 1593, 1774, 2266
FalI	AAGNNNNNCTT	2 cut(s)	2667, 2699
FaqI	GGGAC	4 cut(s)	238, 1677, 2565, 2950
FauI	CCCGC	1 cut(s)	2243
FblI	GTMKAC	2 cut(s)	1658, 2301
Fnu4HI	GCNGC	6 cut(s)	131, 324, 750, 753, 1890, 2493
FokI	GGATG	5 cut(s)	458, 1848, 2246, 2327, 2535
FriOI	GRGCYC	4 cut(s)	41, 183, 1819, 2258
Fsp4HI	GCNGC	6 cut(s)	131, 324, 750, 753, 1890, 2493
FspBI	CTAG	9 cut(s)	627, 729, 741, 963, 1074, 1506, 1977, 2480, 2669
GlaI	GCGC	3 cut(s)	192, 2442, 2630
GluI	GCNGC	6 cut(s)	131, 324, 750, 753, 1890, 2493
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	194
HapII	CCGG	6 cut(s)	34, 176, 204, 238, 381, 2934
HgaI	GACGC	3 cut(s)	351, 620, 1524
HhaI	GCGC	3 cut(s)	193, 2443, 2631
Hin6I	GCGC	3 cut(s)	191, 2441, 2629
HinP1I	GCGC	3 cut(s)	191, 2441, 2629
HincII	GTYRAC	4 cut(s)	694, 1761, 1798, 2302
HindII	GTYRAC	4 cut(s)	694, 1761, 1798, 2302
HindIII	AAGCTT	1 cut(s)	1846
HpaI	GTTAAC	1 cut(s)	1798
HpaII	CCGG	6 cut(s)	34, 176, 204, 238, 381, 2934
HphI	GGTGA	3 cut(s)	615, 1494, 2075
Hpy166II	GTNNAC	8 cut(s)	471, 694, 1450, 1659, 1761, 1798, 2095, 2302
Hpy8I	GTNNAC	8 cut(s)	471, 694, 1450, 1659, 1761, 1798, 2095, 2302
Hpy99I	CGWCG	4 cut(s)	101, 119, 146, 1540
HpyCH4III	ACNGT	8 cut(s)	91, 264, 1163, 1390, 1444, 1691, 1826, 1941
HpyCH4IV	ACGT	3 cut(s)	372, 1026, 1212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	2262, 2286
HpySE526I	ACGT	3 cut(s)	372, 1026, 1212
HspAI	GCGC	3 cut(s)	191, 2441, 2629
Kpn2I	TCCGGA	1 cut(s)	33
KspAI	GTTAAC	1 cut(s)	1798
LguI	GCTCTTC	1 cut(s)	2685
LmnI	GCTCC	8 cut(s)	36, 36, 44, 178, 232, 240, 1617, 2923
Lsp1109I	GCAGC	4 cut(s)	761, 764, 1876, 2479
LweI	GCATC	4 cut(s)	857, 1260, 2224, 2683
MabI	ACCWGGT	1 cut(s)	2943
MaeI	CTAG	9 cut(s)	627, 729, 741, 963, 1074, 1506, 1977, 2480, 2669
MaeII	ACGT	3 cut(s)	372, 1026, 1212
MaeIII	GTNAC	7 cut(s)	85, 1489, 1597, 1804, 2063, 2129, 2162
MfeI	CAATTG	4 cut(s)	334, 944, 1246, 2148
MflI	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1732, 2214, 2813
MhlI	GDGCHC	6 cut(s)	41, 183, 237, 1819, 2258, 2548
MlyI	GAGTC	4 cut(s)	77, 1156, 1664, 2297
MmeI	TCCRAC	3 cut(s)	1384, 2090, 2791
MroI	TCCGGA	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	1034
MseI	TTAA	7 cut(s)	848, 912, 1517, 1797, 1850, 2159, 2366
MslI	CAYNNNNRTG	2 cut(s)	2010, 2882
MspA1I	CMGCKG	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	2158
MspI	CCGG	6 cut(s)	34, 176, 204, 238, 381, 2934
MspR9I	CCNGG	8 cut(s)	22, 80, 205, 586, 2041, 2229, 2935, 2945
MunI	CAATTG	4 cut(s)	334, 944, 1246, 2148
Mva1269I	GAATGC	2 cut(s)	158, 1223
MvaI	CCWGG	6 cut(s)	22, 80, 586, 2041, 2229, 2945
MwoI	GCNNNNNNNGC	2 cut(s)	2262, 2286
NciI	CCSGG	2 cut(s)	205, 2935
NlaIV	GGNNCC	9 cut(s)	242, 254, 1619, 1780, 1817, 2145, 2255, 2256, 2938
NmeAIII	GCCGAG	1 cut(s)	1918
NmuCI	GTSAC	5 cut(s)	85, 1597, 1804, 2063, 2129
NspI	RCATGY	3 cut(s)	125, 980, 1877
NspV	TTCGAA	1 cut(s)	1478
PagI	TCATGA	1 cut(s)	1414
PciI	ACATGT	1 cut(s)	1873
PciSI	GCTCTTC	1 cut(s)	2685
PctI	GAATGC	2 cut(s)	158, 1223
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	9 cut(s)	146, 496, 563, 656, 1009, 1096, 1858, 2560, 2907
Pfl23II	CGTACG	1 cut(s)	217
PfoI	TCCNGGA	2 cut(s)	2039, 2933
PkrI	GCNGC	6 cut(s)	132, 325, 751, 754, 1891, 2494
PleI	GAGTC	4 cut(s)	76, 1155, 1663, 2297
PpsI	GAGTC	4 cut(s)	76, 1155, 1663, 2297
PpuMI	RGGWCCY	2 cut(s)	252, 2937
PscI	ACATGT	1 cut(s)	1873
PshAI	GACNNNNGTC	1 cut(s)	361
Psp124BI	GAGCTC	2 cut(s)	41, 183
Psp5II	RGGWCCY	2 cut(s)	252, 2937
Psp6I	CCWGG	6 cut(s)	20, 78, 584, 2039, 2227, 2943
PspEI	GGTNACC	1 cut(s)	2063
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	6 cut(s)	20, 78, 584, 2039, 2227, 2943
PspLI	CGTACG	1 cut(s)	217
PspN4I	GGNNCC	9 cut(s)	242, 254, 1619, 1780, 1817, 2145, 2255, 2256, 2938
PspOMI	GGGCCC	2 cut(s)	1815, 2254
PspPI	GGNCC	9 cut(s)	24, 169, 252, 588, 1815, 1816, 2254, 2255, 2937
PspPPI	RGGWCCY	2 cut(s)	252, 2937
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1732, 2214, 2813
RsaI	GTAC	3 cut(s)	219, 1281, 1998
RsaNI	GTAC	3 cut(s)	218, 1280, 1997
RseI	CAYNNNNRTG	2 cut(s)	2010, 2882
SacI	GAGCTC	2 cut(s)	41, 183
SalI	GTCGAC	1 cut(s)	2300
SapI	GCTCTTC	1 cut(s)	2685
SaqAI	TTAA	7 cut(s)	848, 912, 1517, 1797, 1850, 2159, 2366
SatI	GCNGC	6 cut(s)	131, 324, 750, 753, 1890, 2493
Sau96I	GGNCC	9 cut(s)	24, 169, 252, 588, 1815, 1816, 2254, 2255, 2937
SchI	GAGTC	4 cut(s)	77, 1156, 1664, 2297
ScrFI	CCNGG	8 cut(s)	22, 80, 205, 586, 2041, 2229, 2935, 2945
SduI	GDGCHC	6 cut(s)	41, 183, 237, 1819, 2258, 2548
SexAI	ACCWGGT	1 cut(s)	2943
SfaNI	GCATC	4 cut(s)	857, 1260, 2224, 2683
SfcI	CTRYAG	2 cut(s)	606, 1443
SfuI	TTCGAA	1 cut(s)	1478
SinI	GGWCC	2 cut(s)	252, 2937
SmiMI	CAYNNNNRTG	2 cut(s)	2010, 2882
SmlI	CTYRAG	4 cut(s)	871, 1230, 1990, 2158
SmoI	CTYRAG	4 cut(s)	871, 1230, 1990, 2158
SpeI	ACTAGT	1 cut(s)	1073
SsiI	CCGC	5 cut(s)	131, 323, 1132, 2250, 2615
SspMI	CTAG	9 cut(s)	627, 729, 741, 963, 1074, 1506, 1977, 2480, 2669
SstI	GAGCTC	2 cut(s)	41, 183
StyD4I	CCNGG	8 cut(s)	20, 78, 203, 584, 2039, 2227, 2933, 2943
StyI	CCWWGG	4 cut(s)	1505, 1593, 1774, 2266
TaaI	ACNGT	8 cut(s)	91, 264, 1163, 1390, 1444, 1691, 1826, 1941
TaiI	ACGT	3 cut(s)	375, 1029, 1215
TatI	WGTACW	1 cut(s)	1279
TauI	GCSGC	2 cut(s)	133, 326
TfiI	GAWTC	9 cut(s)	146, 496, 563, 656, 1009, 1096, 1858, 2560, 2907
Tru1I	TTAA	7 cut(s)	848, 912, 1517, 1797, 1850, 2159, 2366
Tru9I	TTAA	7 cut(s)	848, 912, 1517, 1797, 1850, 2159, 2366
TscAI	CASTG	4 cut(s)	1370, 1606, 1831, 2134
TseFI	GTSAC	5 cut(s)	85, 1597, 1804, 2063, 2129
TseI	GCWGC	4 cut(s)	749, 752, 1889, 2492
Tsp45I	GTSAC	5 cut(s)	85, 1597, 1804, 2063, 2129
TspRI	CASTG	4 cut(s)	1370, 1606, 1831, 2134
Vha464I	CTTAAG	1 cut(s)	2158
VpaK11BI	GGWCC	2 cut(s)	252, 2937
XagI	CCTNNNNNAGG	2 cut(s)	1509, 2265
XapI	RAATTY	6 cut(s)	757, 769, 2027, 2034, 2844, 2928
XbaI	TCTAGA	1 cut(s)	1976
XceI	RCATGY	3 cut(s)	125, 980, 1877
XcmI	CCANNNNNNNNNTGG	2 cut(s)	820, 2273
XmaJI	CCTAGG	1 cut(s)	1505
XmiI	GTMKAC	2 cut(s)	1658, 2301
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	9 cut(s)	627, 729, 741, 963, 1074, 1506, 1977, 2480, 2669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.