Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

24202737 .. 24215394

Gene Structure 12658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3384 bp

ATGGCTTCTCTCATTTCCCCTCTTCCTCCCAAATCCAAATCGGACCCCAATTCCCTCGCCGTCACGGTGTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCACTGAACTTCGTCGATTCGAGATCTGCATTCTCGGCCGGCCTGCCGGAGCTCGCTTCGGCGCCGGAGATGGCCGGGAAAGACGGCGTACGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCGCCGAGACTGTCTCCATTGCCCGATCTGCCCTCGCCTAGCAAGAAGGCCAGGGGTAGTTTGGGAAATGTGGCTATTGACAATTGTGTGAGGAGGTCGCCCAGACTTGCGTCTGCTGACGTGGAAGCCGGAAAGGGCAAAACCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATGAAGAGAAAGATACTGAGAAGTTTACAAGGAGATCTCCGAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGACGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCAAAGGAGAAATGTCCTTCTAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCAAATTCCAATTCAAATTCTTCCATTGAATTGTCTGGTTCAAAAGGTAAGGGTTCTTCCAAGAAGATTATGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGATGCTTGAGGCAATCTCCAATAAGAGCGACATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTAGAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCTACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGGTTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAACGATGATGGAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCGAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTGCGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGTCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGATGTCGATAATGTAGAGAGAACTAATCGATCTAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGACTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATACAAGATTTTGTAAGAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTATAGAAATGTCGACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCTCGGCCCACACATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCGTTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGATGATTATGCACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTGGGAAGAGACAATGTGGCTCGGAGGGATTTGACTGAAAAGCAGTCAGTGTTGCCATCTGGAAAGCCATTGGTACCAGACTATGCCTTTACTTTTGAACAAGGGAAGTCTAAAAGACCATTTGCGAGGTTATGGTGGGATGAGACCGTGGCCACTGTATTGACATTCCCAAGTTGTCACAACCAGGTTGTATTACATCCTGAGCAGGACCGAATCCTCACTCTACGAGAATGTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGCACGGTTAGAGAGAGGTACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTCGCGCGAGCTTTAGGATATGCATTGGGATTGGCAGTTCACAAATCCAGCGGGAATGAACCACTGCTGACTCTCCCCCAAAATTTCTCTCATTCAAACTATTTTCAATTCACAGAAATTTTGCCCCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1127

Amino Acids

127.27

Weight (kDa)

8.27

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	412 - 519	9.5e-16	BAH domain
Chromo	PF00385	667 - 721	1.7e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	727 - 1091	1.3e-35	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2998
AccB1I	GGYRCC	3 cut(s)	166, 1754, 2998
AccI	GTMKAC	3 cut(s)	1634, 2149, 2271
AccII	CGCG	2 cut(s)	3254, 3256
AciI	CCGC	4 cut(s)	1108, 2220, 2585, 3300
AclWI	GGATC	4 cut(s)	418, 1061, 1298, 2791
AcoI	YGGCCR	4 cut(s)	104, 141, 177, 3075
AcsI	RAATTY	7 cut(s)	733, 745, 1997, 2815, 2899, 3331, 3366
AcuI	CTGAAG	2 cut(s)	1216, 2201
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	5 cut(s)	195, 1257, 1974, 3000, 3218
AfiI	CCNNNNNNNGG	5 cut(s)	721, 1487, 2123, 2198, 2237
AflII	CTTAAG	1 cut(s)	2128
AflIII	ACRYGT	1 cut(s)	1849
AhlI	ACTAGT	1 cut(s)	1049
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	6 cut(s)	278, 560, 2009, 2197, 2914, 3108
AloI	GAACNNNNNNTCC	2 cut(s)	3270, 3302
Alw21I	GWGCWC	3 cut(s)	159, 213, 2518
AlwI	GGATC	4 cut(s)	418, 1061, 1298, 2791
AlwNI	CAGNNNCTG	1 cut(s)	590
ApaI	GGGCCC	2 cut(s)	1795, 2228
ApeKI	GCWGC	4 cut(s)	725, 728, 1865, 2462
ApoI	RAATTY	7 cut(s)	733, 745, 1997, 2815, 2899, 3331, 3366
Asp700I	GAANNNNTTC	1 cut(s)	1010
Asp718I	GGTACC	1 cut(s)	2998
AspA2I	CCTAGG	1 cut(s)	1481
AspLEI	GCGC	4 cut(s)	169, 2413, 2601, 3256
AspS9I	GGNCC	9 cut(s)	43, 564, 1791, 1792, 2224, 2225, 2550, 2908, 3133
AsuC2I	CCSGG	2 cut(s)	181, 2906
AsuHPI	GGTGA	3 cut(s)	591, 1470, 2045
AsuII	TTCGAA	1 cut(s)	1454
AvaII	GGWCC	3 cut(s)	43, 2908, 3133
AvrII	CCTAGG	1 cut(s)	1481
BaeGI	GKGCMC	2 cut(s)	1795, 2228
BalI	TGGCCA	1 cut(s)	3077
BanI	GGYRCC	3 cut(s)	166, 1754, 2998
BanII	GRGCYC	3 cut(s)	159, 1795, 2228
BarI	GAAGNNNNNNTAC	2 cut(s)	769, 801
BauI	CACGAG	2 cut(s)	2631, 2865
BbsI	GAAGAC	2 cut(s)	2305, 2628
Bbv12I	GWGCWC	3 cut(s)	159, 213, 2518
BbvI	GCAGC	4 cut(s)	737, 740, 1852, 2449
BceAI	ACGGC	3 cut(s)	44, 119, 205
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	6 cut(s)	280, 562, 2011, 2199, 2916, 3110
BcnI	CCSGG	2 cut(s)	181, 2906
BcuI	ACTAGT	1 cut(s)	1049
BfmI	CTRYAG	3 cut(s)	582, 1419, 2260
BfoI	RGCGCY	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	2128
BglII	AGATCT	6 cut(s)	128, 455, 698, 1130, 1708, 2184
BisI	GCNGC	4 cut(s)	726, 729, 1866, 2463
BlnI	CCTAGG	1 cut(s)	1481
BlsI	GCNGC	4 cut(s)	727, 730, 1867, 2464
Bme1390I	CCNGG	8 cut(s)	181, 280, 562, 2011, 2199, 2906, 2916, 3110
Bme18I	GGWCC	3 cut(s)	43, 2908, 3133
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	9 cut(s)	43, 564, 1791, 1792, 2224, 2225, 2550, 2908, 3133
BmrFI	CCNGG	8 cut(s)	181, 280, 562, 2011, 2199, 2906, 2916, 3110
BmrI	ACTGGG	1 cut(s)	1665
BmsI	GCATC	4 cut(s)	833, 1236, 2194, 2653
BmuI	ACTGGG	1 cut(s)	1665
BoxI	GACNNNNGTC	1 cut(s)	337
BpiI	GAAGAC	2 cut(s)	2305, 2628
BplI	GAGNNNNNCTC	4 cut(s)	226, 258, 841, 873
Bpu10I	CCTNAGC	1 cut(s)	3126
Bpu14I	TTCGAA	1 cut(s)	1454
BpuEI	CTTGAG	3 cut(s)	868, 1191, 1951
BpuMI	CCSGG	2 cut(s)	181, 2906
Bsa29I	ATCGAT	2 cut(s)	1948, 2833
BsaBI	GATNNNNATC	1 cut(s)	1954
BsaHI	GRCGYC	1 cut(s)	167
BsaI	GGTCTC	3 cut(s)	808, 1955, 3062
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	5 cut(s)	721, 1487, 2123, 2198, 2237
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	1671, 1744, 2582
Bse3DI	GCAATG	3 cut(s)	245, 1506, 2608
Bse8I	GATNNNNATC	1 cut(s)	1954
BseBI	CCWGG	6 cut(s)	280, 562, 2011, 2199, 2916, 3110
BseCI	ATCGAT	2 cut(s)	1948, 2833
BseGI	GGATG	7 cut(s)	427, 1837, 2209, 2290, 2518, 3070, 3121
BseJI	GATNNNNATC	1 cut(s)	1954
BseLI	CCNNNNNNNGG	5 cut(s)	721, 1487, 2123, 2198, 2237
BseMI	GCAATG	3 cut(s)	245, 1506, 2608
BseMII	CTCAG	8 cut(s)	212, 429, 918, 963, 2369, 2428, 2517, 3117
BseNI	ACTGG	3 cut(s)	1671, 1744, 2582
BseRI	GAGGAG	1 cut(s)	334
BseSI	GKGCMC	2 cut(s)	1795, 2228
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	737, 740, 1852, 2449
BsgI	GTGCAG	1 cut(s)	2447
Bsh1236I	CGCG	2 cut(s)	3254, 3256
Bsh1285I	CGRYCG	1 cut(s)	144
BshNI	GGYRCC	3 cut(s)	166, 1754, 2998
BshVI	ATCGAT	2 cut(s)	1948, 2833
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	3 cut(s)	159, 213, 2518
BsiSI	CCGG	7 cut(s)	144, 152, 170, 180, 214, 357, 2905
BsiWI	CGTACG	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	1653, 2921
BslI	CCNNNNNNNGG	5 cut(s)	721, 1487, 2123, 2198, 2237
BsmFI	GGGAC	2 cut(s)	1653, 2921
BsmI	GAATGC	2 cut(s)	134, 1199
Bso31I	GGTCTC	3 cut(s)	808, 1955, 3062
Bsp119I	TTCGAA	1 cut(s)	1454
Bsp120I	GGGCCC	2 cut(s)	1791, 2224
Bsp1286I	GDGCHC	5 cut(s)	159, 213, 1795, 2228, 2518
Bsp1407I	TGTACA	1 cut(s)	1255
BspACI	CCGC	4 cut(s)	1108, 2220, 2585, 3300
BspCNI	CTCAG	8 cut(s)	213, 430, 919, 964, 2370, 2427, 2518, 3118
BspDI	ATCGAT	2 cut(s)	1948, 2833
BspFNI	CGCG	2 cut(s)	3254, 3256
BspHI	TCATGA	1 cut(s)	1390
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	4 cut(s)	418, 1061, 1298, 2791
BspQI	GCTCTTC	1 cut(s)	2655
BspT104I	TTCGAA	1 cut(s)	1454
BspT107I	GGYRCC	3 cut(s)	166, 1754, 2998
BspTI	CTTAAG	1 cut(s)	2128
BspTNI	GGTCTC	3 cut(s)	808, 1955, 3062
BsrDI	GCAATG	3 cut(s)	245, 1506, 2608
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	1255
BsrI	ACTGG	3 cut(s)	1671, 1744, 2582
BssAI	RCCGGY	1 cut(s)	143
BssNAI	GTATAC	1 cut(s)	2150
BssNI	GRCGYC	1 cut(s)	167
BssSI	CACGAG	2 cut(s)	2631, 2865
BssT1I	CCWWGG	4 cut(s)	1481, 1569, 1750, 2236
Bst1107I	GTATAC	1 cut(s)	2150
Bst2BI	CACGAG	2 cut(s)	2631, 2865
Bst2UI	CCWGG	6 cut(s)	280, 562, 2011, 2199, 2916, 3110
Bst6I	CTCTTC	5 cut(s)	27, 420, 1115, 2655, 2926
BstACI	GRCGYC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	2128
BstAUI	TGTACA	1 cut(s)	1255
BstBI	TTCGAA	1 cut(s)	1454
BstC8I	GCNNGC	6 cut(s)	88, 145, 149, 159, 2054, 3258
BstDSI	CCRYGG	1 cut(s)	3072
BstEII	GGTNACC	1 cut(s)	2033
BstENI	CCTNNNNNAGG	2 cut(s)	1485, 2235
BstF5I	GGATG	7 cut(s)	427, 1837, 2209, 2290, 2518, 3070, 3121
BstFNI	CGCG	2 cut(s)	3254, 3256
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	4 cut(s)	169, 2413, 2601, 3256
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 256, 2232, 2256
BstNI	CCWGG	6 cut(s)	280, 562, 2011, 2199, 2916, 3110
BstNSI	RCATGY	3 cut(s)	101, 956, 1853
BstPAI	GACNNNNGTC	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	2033
BstSCI	CCNGG	8 cut(s)	179, 278, 560, 2009, 2197, 2904, 2914, 3108
BstSFI	CTRYAG	3 cut(s)	582, 1419, 2260
BstSLI	GKGCMC	2 cut(s)	1795, 2228
BstUI	CGCG	2 cut(s)	3254, 3256
BstV1I	GCAGC	4 cut(s)	737, 740, 1852, 2449
BstV2I	GAAGAC	2 cut(s)	2305, 2628
BstX2I	RGATCY	8 cut(s)	128, 455, 698, 1066, 1130, 1708, 2184, 2783
BstXI	CCANNNNNNTGG	1 cut(s)	1657
BstYI	RGATCY	8 cut(s)	128, 455, 698, 1066, 1130, 1708, 2184, 2783
BstZ17I	GTATAC	1 cut(s)	2150
BstZI	CGGCCG	1 cut(s)	141
Bsu15I	ATCGAT	2 cut(s)	1948, 2833
BsuTUI	ATCGAT	2 cut(s)	1948, 2833
BtgI	CCRYGG	1 cut(s)	3072
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	7 cut(s)	427, 1837, 2209, 2290, 2518, 3070, 3121
BtsI	GCAGTG	2 cut(s)	2104, 3311
BtsIMutI	CAGTG	8 cut(s)	107, 1346, 1575, 1807, 2104, 2979, 3078, 3311
Cac8I	GCNNGC	6 cut(s)	88, 145, 149, 159, 2054, 3258
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	1390
CfoI	GCGC	4 cut(s)	169, 2413, 2601, 3256
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	9 cut(s)	43, 564, 1791, 1792, 2224, 2225, 2550, 2908, 3133
ClaI	ATCGAT	2 cut(s)	1948, 2833
CseI	GACGC	3 cut(s)	327, 596, 1500
CsiI	ACCWGGT	2 cut(s)	2914, 3108
Csp6I	GTAC	5 cut(s)	194, 1256, 1973, 2999, 3217
CviQI	GTAC	5 cut(s)	194, 1256, 1973, 2999, 3217
DinI	GGCGCC	1 cut(s)	168
DraI	TTTAAA	1 cut(s)	825
EaeI	YGGCCR	4 cut(s)	104, 141, 177, 3075
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	5 cut(s)	27, 420, 1115, 2655, 2926
EarI	CTCTTC	5 cut(s)	27, 420, 1115, 2655, 2926
EciI	GGCGGA	1 cut(s)	2574
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	4 cut(s)	1481, 1569, 1750, 2236
Eco24I	GRGCYC	3 cut(s)	159, 1795, 2228
Eco31I	GGTCTC	3 cut(s)	808, 1955, 3062
Eco32I	GATATC	2 cut(s)	1476, 2023
Eco47I	GGWCC	3 cut(s)	43, 2908, 3133
Eco52I	CGGCCG	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	1216, 2201
Eco91I	GGTNACC	1 cut(s)	2033
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	2 cut(s)	1485, 2235
EcoO109I	RGGNCCY	3 cut(s)	1792, 2224, 2908
EcoO65I	GGTNACC	1 cut(s)	2033
EcoRII	CCWGG	6 cut(s)	278, 560, 2009, 2197, 2914, 3108
EcoRV	GATATC	2 cut(s)	1476, 2023
EcoT14I	CCWWGG	4 cut(s)	1481, 1569, 1750, 2236
EcoT22I	ATGCAT	1 cut(s)	3274
EcoT38I	GRGCYC	3 cut(s)	159, 1795, 2228
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	4 cut(s)	1481, 1569, 1750, 2236
FalI	AAGNNNNNCTT	2 cut(s)	2637, 2669
FaqI	GGGAC	2 cut(s)	1653, 2921
FauI	CCCGC	2 cut(s)	2213, 3293
FblI	GTMKAC	3 cut(s)	1634, 2149, 2271
Fnu4HI	GCNGC	4 cut(s)	726, 729, 1866, 2463
FokI	GGATG	7 cut(s)	434, 1824, 2216, 2297, 2505, 3077, 3108
FriOI	GRGCYC	3 cut(s)	159, 1795, 2228
FseI	GGCCGGCC	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	726, 729, 1866, 2463
GlaI	GCGC	4 cut(s)	168, 2412, 2600, 3255
GluI	GCNGC	4 cut(s)	726, 729, 1866, 2463
HaeII	RGCGCY	1 cut(s)	170
HapII	CCGG	7 cut(s)	144, 152, 170, 180, 214, 357, 2905
HgaI	GACGC	3 cut(s)	327, 596, 1500
HhaI	GCGC	4 cut(s)	169, 2413, 2601, 3256
Hin1I	GRCGYC	1 cut(s)	167
Hin6I	GCGC	4 cut(s)	167, 2411, 2599, 3254
HinP1I	GCGC	4 cut(s)	167, 2411, 2599, 3254
HincII	GTYRAC	4 cut(s)	670, 1737, 1774, 2272
HindII	GTYRAC	4 cut(s)	670, 1737, 1774, 2272
HindIII	AAGCTT	1 cut(s)	1822
HpaI	GTTAAC	1 cut(s)	1774
HpaII	CCGG	7 cut(s)	144, 152, 170, 180, 214, 357, 2905
HphI	GGTGA	3 cut(s)	591, 1470, 2045
Hpy99I	CGWCG	4 cut(s)	77, 95, 122, 1516
HpyCH4IV	ACGT	3 cut(s)	348, 1002, 1188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 256, 2232, 2256
HpySE526I	ACGT	3 cut(s)	348, 1002, 1188
Hsp92I	GRCGYC	1 cut(s)	167
HspAI	GCGC	4 cut(s)	167, 2411, 2599, 3254
KasI	GGCGCC	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	3002
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	1774
LguI	GCTCTTC	1 cut(s)	2655
LmnI	GCTCC	5 cut(s)	154, 208, 216, 1593, 2894
Lsp1109I	GCAGC	4 cut(s)	737, 740, 1852, 2449
LweI	GCATC	4 cut(s)	833, 1236, 2194, 2653
MabI	ACCWGGT	2 cut(s)	2914, 3108
MaeII	ACGT	3 cut(s)	348, 1002, 1188
MaeIII	GTNAC	8 cut(s)	61, 1465, 1573, 1780, 2033, 2099, 2132, 3101
MfeI	CAATTG	5 cut(s)	310, 920, 1115, 1222, 2118
MflI	RGATCY	8 cut(s)	128, 455, 698, 1066, 1130, 1708, 2184, 2783
MhlI	GDGCHC	5 cut(s)	159, 213, 1795, 2228, 2518
MlsI	TGGCCA	1 cut(s)	3077
MluNI	TGGCCA	1 cut(s)	3077
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	4 cut(s)	1132, 1640, 2267, 3313
MmeI	TCCRAC	4 cut(s)	1360, 2060, 2761, 3208
Mox20I	TGGCCA	1 cut(s)	3077
Mph1103I	ATGCAT	1 cut(s)	3274
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	1010
MscI	TGGCCA	1 cut(s)	3077
MseI	TTAA	7 cut(s)	824, 888, 1493, 1773, 1826, 2129, 2336
MslI	CAYNNNNRTG	2 cut(s)	1986, 2853
Msp20I	TGGCCA	1 cut(s)	3077
MspA1I	CMGCKG	1 cut(s)	3300
MspCI	CTTAAG	1 cut(s)	2128
MspI	CCGG	7 cut(s)	144, 152, 170, 180, 214, 357, 2905
MspR9I	CCNGG	8 cut(s)	181, 280, 562, 2011, 2199, 2906, 2916, 3110
MunI	CAATTG	5 cut(s)	310, 920, 1115, 1222, 2118
Mva1269I	GAATGC	2 cut(s)	134, 1199
MvaI	CCWGG	6 cut(s)	280, 562, 2011, 2199, 2916, 3110
MvnI	CGCG	2 cut(s)	3254, 3256
MwoI	GCNNNNNNNGC	4 cut(s)	140, 256, 2232, 2256
NaeI	GCCGGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	181, 2906
NgoMIV	GCCGGC	1 cut(s)	143
NmeAIII	GCCGAG	4 cut(s)	119, 258, 1894, 2527
NmuCI	GTSAC	6 cut(s)	61, 1573, 1780, 2033, 2099, 3101
NsiI	ATGCAT	1 cut(s)	3274
NspI	RCATGY	3 cut(s)	101, 956, 1853
NspV	TTCGAA	1 cut(s)	1454
PagI	TCATGA	1 cut(s)	1390
PciI	ACATGT	1 cut(s)	1849
PciSI	GCTCTTC	1 cut(s)	2655
PctI	GAATGC	2 cut(s)	134, 1199
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	1010
Pfl23II	CGTACG	1 cut(s)	193
PfoI	TCCNGGA	2 cut(s)	2009, 2904
PkrI	GCNGC	4 cut(s)	727, 730, 1867, 2464
PleI	GAGTC	4 cut(s)	1131, 1639, 2267, 3313
PluTI	GGCGCC	1 cut(s)	170
PpsI	GAGTC	4 cut(s)	1131, 1639, 2267, 3313
PpuMI	RGGWCCY	1 cut(s)	2908
PscI	ACATGT	1 cut(s)	1849
PshAI	GACNNNNGTC	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	2908
Psp6I	CCWGG	6 cut(s)	278, 560, 2009, 2197, 2914, 3108
PspEI	GGTNACC	1 cut(s)	2033
PspGI	CCWGG	6 cut(s)	278, 560, 2009, 2197, 2914, 3108
PspLI	CGTACG	1 cut(s)	193
PspOMI	GGGCCC	2 cut(s)	1791, 2224
PspPI	GGNCC	9 cut(s)	43, 564, 1791, 1792, 2224, 2225, 2550, 2908, 3133
PspPPI	RGGWCCY	1 cut(s)	2908
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	8 cut(s)	128, 455, 698, 1066, 1130, 1708, 2184, 2783
RigI	GGCCGGCC	1 cut(s)	147
RsaI	GTAC	5 cut(s)	195, 1257, 1974, 3000, 3218
RsaNI	GTAC	5 cut(s)	194, 1256, 1973, 2999, 3217
RseI	CAYNNNNRTG	2 cut(s)	1986, 2853
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	2270
SapI	GCTCTTC	1 cut(s)	2655
SaqAI	TTAA	7 cut(s)	824, 888, 1493, 1773, 1826, 2129, 2336
SatI	GCNGC	4 cut(s)	726, 729, 1866, 2463
Sau96I	GGNCC	9 cut(s)	43, 564, 1791, 1792, 2224, 2225, 2550, 2908, 3133
SchI	GAGTC	4 cut(s)	1132, 1640, 2267, 3313
ScrFI	CCNGG	8 cut(s)	181, 280, 562, 2011, 2199, 2906, 2916, 3110
SduI	GDGCHC	5 cut(s)	159, 213, 1795, 2228, 2518
SexAI	ACCWGGT	2 cut(s)	2914, 3108
SfaNI	GCATC	4 cut(s)	833, 1236, 2194, 2653
SfcI	CTRYAG	3 cut(s)	582, 1419, 2260
SfoI	GGCGCC	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	1454
SinI	GGWCC	3 cut(s)	43, 2908, 3133
SmiMI	CAYNNNNRTG	2 cut(s)	1986, 2853
SmlI	CTYRAG	4 cut(s)	847, 1206, 1966, 2128
SmoI	CTYRAG	4 cut(s)	847, 1206, 1966, 2128
SpeI	ACTAGT	1 cut(s)	1049
SsiI	CCGC	4 cut(s)	1108, 2220, 2585, 3300
SspDI	GGCGCC	1 cut(s)	166
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	8 cut(s)	179, 278, 560, 2009, 2197, 2904, 2914, 3108
StyI	CCWWGG	4 cut(s)	1481, 1569, 1750, 2236
TaiI	ACGT	3 cut(s)	351, 1005, 1191
TaqII	GACCGA	1 cut(s)	3150
TatI	WGTACW	1 cut(s)	1255
Tru1I	TTAA	7 cut(s)	824, 888, 1493, 1773, 1826, 2129, 2336
Tru9I	TTAA	7 cut(s)	824, 888, 1493, 1773, 1826, 2129, 2336
TscAI	CASTG	8 cut(s)	114, 1346, 1582, 1807, 2104, 2979, 3085, 3318
TseFI	GTSAC	6 cut(s)	61, 1573, 1780, 2033, 2099, 3101
TseI	GCWGC	4 cut(s)	725, 728, 1865, 2462
Tsp45I	GTSAC	6 cut(s)	61, 1573, 1780, 2033, 2099, 3101
TspRI	CASTG	8 cut(s)	114, 1346, 1582, 1807, 2104, 2979, 3085, 3318
Vha464I	CTTAAG	1 cut(s)	2128
VpaK11BI	GGWCC	3 cut(s)	43, 2908, 3133
XagI	CCTNNNNNAGG	2 cut(s)	1485, 2235
XapI	RAATTY	7 cut(s)	733, 745, 1997, 2815, 2899, 3331, 3366
XbaI	TCTAGA	1 cut(s)	1952
XceI	RCATGY	3 cut(s)	101, 956, 1853
XcmI	CCANNNNNNNNNTGG	3 cut(s)	286, 796, 2243
XmaJI	CCTAGG	1 cut(s)	1481
XmiI	GTMKAC	3 cut(s)	1634, 2149, 2271
XmnI	GAANNNNTTC	1 cut(s)	1010
Zsp2I	ATGCAT	1 cut(s)	3274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.