Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

39528154 .. 39541273

Gene Structure 13120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3426 bp

ATGAAACCCAAACCCAGGCCCAAGTTCCGGAGCTCCAAATCCAAATCCAAATCCAAATCCAAATCGGACCCCAATTCCCTCGCCATCACGGTGTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCGCTGAACTTCGTCGATTCGAGATCTGCATTCTCGGCCGGCCTGCCGGAGCTCACTTCGGCGCCGGAGATGGCCGGGAAAGACGGCGTACGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCGCCGAGACTGTCTCCATTGCCCGATCTGCCCTCGCCTAGCAAGAAGGCCAGGGGTAGTTTGGGAAATGTGGCTATTGACAATTGTGTGAGGAGGTCGCCCAGACTTGCGTCTGCTGACGTGGAAGCCGGAGAGGGCAAATCCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATGAAAAGAAAGATGCTGAGAAGTTTACAAGGAGATCTCCGAGGTTGATGGATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGACGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCGAAGGAGAAATGTCCTTCCAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCTAATTCCAATTCAAATTCTTCCATTGAATTGTCTGGTTCAAAAGGTAAGGGTCCTTCCAAGAAGATTGTGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGATGCTTGAGGCAATCTCCAGTAAGAGCGGCGTCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTAGAGAAACAGAGCATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCAACCTCCAAAGAACGTGAAAACCTTCAGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGGTTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAACAATGATAAAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAATGATAATTTGATAGACTGCATTATTTCGAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTAAAATCCATTACGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGTTCTTTTTTCTTTGTCAGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGCCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTATAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCTGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTCGATAATGTAGAGAGAACTAATCGATCAAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGATTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATACAAGATTTTGTAAGAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATCAGTGGCTATAATCGCTTTAGAAATGTCGACTCTCCTTTGGATGATGACAGAAATCGTCAAATAATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTCGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTGTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCTCGTCCCACACATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCATTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGACGATTATGTACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTAGGAAGAGACAATGTGGCTCGGAGGGATTTGACTGAAAAGCAGTCAGTGTTGCCATCTGGAAAGCCATTGGTACCAGACTATGCCTTTACTTTTGAACAAGGGAAGTCTAAAAGACCATTTGGGAGGTTATGGTGGGATGAGACCGTGGCCACTGTATTGACATTCCCAAGTTGTCACAACCAGGTTGTATTACATCCTGAGCAGGACCGAATCCTCACTGTACGAGAATGTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGCACGGTTAGAGAGAGGTACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTCGCGCGAGCTTTAGGATATGCGTTGGGATTGGCAGTTCACAAATCCAGCGGGAATGAACCACTGCTGACTCTCCCCCAAAATTTCTCTCATTCAAACTATTTTCAATTCACAGAAATTTTGCCCCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1141

Amino Acids

129.11

Weight (kDa)

8.68

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	420 - 527	8.7e-16	BAH domain
Chromo	PF00385	681 - 735	1.7e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	741 - 1105	2.9e-36	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1728
Acc65I	GGTACC	1 cut(s)	3040
AccB1I	GGYRCC	3 cut(s)	190, 1796, 3040
AccBSI	CCGCTC	1 cut(s)	893
AccI	GTMKAC	2 cut(s)	2191, 2313
AccII	CGCG	2 cut(s)	3296, 3298
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	6 cut(s)	131, 893, 1132, 2262, 2627, 3342
AclWI	GGATC	5 cut(s)	442, 504, 1085, 1322, 2833
AcoI	YGGCCR	4 cut(s)	128, 165, 201, 3117
AcsI	RAATTY	6 cut(s)	769, 2039, 2857, 2941, 3373, 3408
AcuI	CTGAAG	3 cut(s)	1021, 1240, 2243
AcyI	GRCGYC	2 cut(s)	191, 896
AfaI	GTAC	7 cut(s)	219, 1281, 2016, 2907, 3042, 3192, 3260
AfiI	CCNNNNNNNGG	7 cut(s)	15, 27, 745, 1511, 2165, 2240, 2279
AflII	CTTAAG	1 cut(s)	2170
AflIII	ACRYGT	1 cut(s)	1891
AhlI	ACTAGT	1 cut(s)	1073
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	7 cut(s)	14, 302, 584, 2051, 2239, 2956, 3150
AloI	GAACNNNNNNTCC	2 cut(s)	3312, 3344
Alw21I	GWGCWC	4 cut(s)	35, 183, 237, 2560
Alw26I	GTCTC	9 cut(s)	253, 270, 832, 947, 992, 1701, 1997, 2970, 3104
AlwI	GGATC	5 cut(s)	442, 504, 1085, 1322, 2833
AlwNI	CAGNNNCTG	1 cut(s)	614
Aor13HI	TCCGGA	1 cut(s)	27
ApaI	GGGCCC	2 cut(s)	1837, 2270
ApeKI	GCWGC	4 cut(s)	749, 752, 1907, 2504
ApoI	RAATTY	6 cut(s)	769, 2039, 2857, 2941, 3373, 3408
Asp700I	GAANNNNTTC	1 cut(s)	1034
Asp718I	GGTACC	1 cut(s)	3040
AspA2I	CCTAGG	1 cut(s)	1505
AspLEI	GCGC	4 cut(s)	193, 2455, 2643, 3298
AsuC2I	CCSGG	2 cut(s)	205, 2948
AsuHPI	GGTGA	3 cut(s)	615, 1494, 2087
AsuII	TTCGAA	2 cut(s)	659, 1478
AvaII	GGWCC	4 cut(s)	67, 806, 2950, 3175
AvrII	CCTAGG	1 cut(s)	1505
BaeGI	GKGCMC	2 cut(s)	1837, 2270
BalI	TGGCCA	1 cut(s)	3119
BanI	GGYRCC	3 cut(s)	190, 1796, 3040
BanII	GRGCYC	4 cut(s)	35, 183, 1837, 2270
BarI	GAAGNNNNNNTAC	2 cut(s)	793, 825
BauI	CACGAG	1 cut(s)	2673
BbsI	GAAGAC	3 cut(s)	2347, 2670, 2901
Bbv12I	GWGCWC	4 cut(s)	35, 183, 237, 2560
BbvCI	CCTCAGC	1 cut(s)	1911
BbvI	GCAGC	4 cut(s)	761, 764, 1894, 2491
BceAI	ACGGC	2 cut(s)	143, 229
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	7 cut(s)	16, 304, 586, 2053, 2241, 2958, 3152
BcnI	CCSGG	2 cut(s)	205, 2948
BcoDI	GTCTC	9 cut(s)	253, 270, 832, 947, 992, 1701, 1997, 2970, 3104
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	9 cut(s)	291, 627, 729, 741, 963, 1074, 1506, 2492, 2681
BfmI	CTRYAG	2 cut(s)	606, 1443
BfoI	RGCGCY	1 cut(s)	194
BfrI	CTTAAG	1 cut(s)	2170
BglII	AGATCT	6 cut(s)	152, 479, 722, 1154, 1750, 2226
BisI	GCNGC	6 cut(s)	131, 750, 753, 894, 1908, 2505
BlnI	CCTAGG	1 cut(s)	1505
BlsI	GCNGC	6 cut(s)	132, 751, 754, 895, 1909, 2506
Bme1390I	CCNGG	9 cut(s)	16, 205, 304, 586, 2053, 2241, 2948, 2958, 3152
Bme18I	GGWCC	4 cut(s)	67, 806, 2950, 3175
BmgBI	CACGTC	1 cut(s)	373
BmrFI	CCNGG	9 cut(s)	16, 205, 304, 586, 2053, 2241, 2948, 2958, 3152
BmrI	ACTGGG	1 cut(s)	1707
BmsI	GCATC	5 cut(s)	448, 857, 1260, 2236, 2695
BmuI	ACTGGG	1 cut(s)	1707
BoxI	GACNNNNGTC	1 cut(s)	361
BpiI	GAAGAC	3 cut(s)	2347, 2670, 2901
BplI	GAGNNNNNCTC	4 cut(s)	250, 282, 865, 897
BpmI	CTGGAG	1 cut(s)	867
Bpu10I	CCTNAGC	2 cut(s)	1911, 3168
Bpu14I	TTCGAA	2 cut(s)	659, 1478
BpuEI	CTTGAG	3 cut(s)	892, 1215, 1993
BpuMI	CCSGG	2 cut(s)	205, 2948
Bsa29I	ATCGAT	2 cut(s)	1990, 2875
BsaBI	GATNNNNATC	1 cut(s)	1996
BsaHI	GRCGYC	2 cut(s)	191, 896
BsaI	GGTCTC	3 cut(s)	832, 1997, 3104
BsaWI	WCCGGW	2 cut(s)	27, 237
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 27, 745, 1511, 2165, 2240, 2279
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	4 cut(s)	884, 1713, 1786, 2624
Bse3DI	GCAATG	2 cut(s)	269, 2650
Bse8I	GATNNNNATC	1 cut(s)	1996
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	7 cut(s)	16, 304, 586, 2053, 2241, 2958, 3152
BseCI	ATCGAT	2 cut(s)	1990, 2875
BseGI	GGATG	7 cut(s)	451, 1879, 2251, 2332, 2560, 3112, 3163
BseJI	GATNNNNATC	1 cut(s)	1996
BseLI	CCNNNNNNNGG	7 cut(s)	15, 27, 745, 1511, 2165, 2240, 2279
BseMI	GCAATG	2 cut(s)	269, 2650
BseMII	CTCAG	9 cut(s)	236, 453, 942, 987, 1902, 2411, 2470, 2559, 3159
BseNI	ACTGG	4 cut(s)	884, 1713, 1786, 2624
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	1837, 2270
BseX3I	CGGCCG	2 cut(s)	128, 165
BseXI	GCAGC	4 cut(s)	761, 764, 1894, 2491
BsgI	GTGCAG	1 cut(s)	2489
Bsh1236I	CGCG	2 cut(s)	3296, 3298
Bsh1285I	CGRYCG	2 cut(s)	131, 168
BshNI	GGYRCC	3 cut(s)	190, 1796, 3040
BshVI	ATCGAT	2 cut(s)	1990, 2875
BsiEI	CGRYCG	2 cut(s)	131, 168
BsiHKAI	GWGCWC	4 cut(s)	35, 183, 237, 2560
BsiSI	CCGG	8 cut(s)	28, 168, 176, 194, 204, 238, 381, 2947
BsiWI	CGTACG	1 cut(s)	217
BslFI	GGGAC	3 cut(s)	1695, 2577, 2963
BslI	CCNNNNNNNGG	7 cut(s)	15, 27, 745, 1511, 2165, 2240, 2279
BsmAI	GTCTC	9 cut(s)	253, 270, 832, 947, 992, 1701, 1997, 2970, 3104
BsmFI	GGGAC	3 cut(s)	1695, 2577, 2963
BsmI	GAATGC	2 cut(s)	158, 1223
Bso31I	GGTCTC	3 cut(s)	832, 1997, 3104
Bsp119I	TTCGAA	2 cut(s)	659, 1478
Bsp120I	GGGCCC	2 cut(s)	1833, 2266
Bsp1286I	GDGCHC	6 cut(s)	35, 183, 237, 1837, 2270, 2560
Bsp13I	TCCGGA	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	1279
BspACI	CCGC	6 cut(s)	131, 893, 1132, 2262, 2627, 3342
BspCNI	CTCAG	9 cut(s)	237, 454, 943, 988, 1903, 2412, 2469, 2560, 3160
BspDI	ATCGAT	2 cut(s)	1990, 2875
BspEI	TCCGGA	1 cut(s)	27
BspFNI	CGCG	2 cut(s)	3296, 3298
BspHI	TCATGA	1 cut(s)	1414
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	5 cut(s)	442, 504, 1085, 1322, 2833
BspQI	GCTCTTC	1 cut(s)	2697
BspT104I	TTCGAA	2 cut(s)	659, 1478
BspT107I	GGYRCC	3 cut(s)	190, 1796, 3040
BspTI	CTTAAG	1 cut(s)	2170
BspTNI	GGTCTC	3 cut(s)	832, 1997, 3104
BsrBI	CCGCTC	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	269, 2650
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	1279
BsrI	ACTGG	4 cut(s)	884, 1713, 1786, 2624
BssAI	RCCGGY	1 cut(s)	167
BssNAI	GTATAC	1 cut(s)	2192
BssNI	GRCGYC	2 cut(s)	191, 896
BssSI	CACGAG	1 cut(s)	2673
BssT1I	CCWWGG	4 cut(s)	1505, 1593, 1792, 2278
Bst1107I	GTATAC	1 cut(s)	2192
Bst2BI	CACGAG	1 cut(s)	2673
Bst2UI	CCWGG	7 cut(s)	16, 304, 586, 2053, 2241, 2958, 3152
Bst6I	CTCTTC	3 cut(s)	1139, 2697, 2968
BstACI	GRCGYC	2 cut(s)	191, 896
BstAFI	CTTAAG	1 cut(s)	2170
BstAUI	TGTACA	1 cut(s)	1279
BstBI	TTCGAA	2 cut(s)	659, 1478
BstC8I	GCNNGC	6 cut(s)	112, 169, 173, 978, 2096, 3300
BstDSI	CCRYGG	1 cut(s)	3114
BstEII	GGTNACC	1 cut(s)	2075
BstENI	CCTNNNNNAGG	2 cut(s)	1509, 2277
BstF5I	GGATG	7 cut(s)	451, 1879, 2251, 2332, 2560, 3112, 3163
BstFNI	CGCG	2 cut(s)	3296, 3298
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	4 cut(s)	193, 2455, 2643, 3298
BstMAI	GTCTC	9 cut(s)	253, 270, 832, 947, 992, 1701, 1997, 2970, 3104
BstMCI	CGRYCG	2 cut(s)	131, 168
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 280, 1681, 2274, 2298
BstNI	CCWGG	7 cut(s)	16, 304, 586, 2053, 2241, 2958, 3152
BstNSI	RCATGY	3 cut(s)	125, 980, 1895
BstPAI	GACNNNNGTC	1 cut(s)	361
BstPI	GGTNACC	1 cut(s)	2075
BstSCI	CCNGG	9 cut(s)	14, 203, 302, 584, 2051, 2239, 2946, 2956, 3150
BstSFI	CTRYAG	2 cut(s)	606, 1443
BstSLI	GKGCMC	2 cut(s)	1837, 2270
BstUI	CGCG	2 cut(s)	3296, 3298
BstV1I	GCAGC	4 cut(s)	761, 764, 1894, 2491
BstV2I	GAAGAC	3 cut(s)	2347, 2670, 2901
BstX2I	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1750, 2226, 2825
BstXI	CCANNNNNNTGG	1 cut(s)	1699
BstYI	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1750, 2226, 2825
BstZ17I	GTATAC	1 cut(s)	2192
BstZI	CGGCCG	2 cut(s)	128, 165
Bsu15I	ATCGAT	2 cut(s)	1990, 2875
BsuTUI	ATCGAT	2 cut(s)	1990, 2875
BtgI	CCRYGG	1 cut(s)	3114
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	7 cut(s)	451, 1879, 2251, 2332, 2560, 3112, 3163
BtsI	GCAGTG	2 cut(s)	2146, 3353
BtsIMutI	CAGTG	9 cut(s)	1370, 1599, 1849, 2146, 2293, 3021, 3120, 3186, 3353
Cac8I	GCNNGC	6 cut(s)	112, 169, 173, 978, 2096, 3300
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	1 cut(s)	1414
CfoI	GCGC	4 cut(s)	193, 2455, 2643, 3298
Cfr10I	RCCGGY	1 cut(s)	167
ClaI	ATCGAT	2 cut(s)	1990, 2875
CseI	GACGC	3 cut(s)	351, 620, 885
CsiI	ACCWGGT	2 cut(s)	2956, 3150
Csp6I	GTAC	7 cut(s)	218, 1280, 2015, 2906, 3041, 3191, 3259
CviQI	GTAC	7 cut(s)	218, 1280, 2015, 2906, 3041, 3191, 3259
DinI	GGCGCC	1 cut(s)	192
DraI	TTTAAA	1 cut(s)	849
EaeI	YGGCCR	4 cut(s)	128, 165, 201, 3117
EagI	CGGCCG	2 cut(s)	128, 165
Eam1104I	CTCTTC	3 cut(s)	1139, 2697, 2968
EarI	CTCTTC	3 cut(s)	1139, 2697, 2968
EciI	GGCGGA	1 cut(s)	2616
Ecl136II	GAGCTC	2 cut(s)	33, 181
EclXI	CGGCCG	2 cut(s)	128, 165
Eco130I	CCWWGG	4 cut(s)	1505, 1593, 1792, 2278
Eco24I	GRGCYC	4 cut(s)	35, 183, 1837, 2270
Eco31I	GGTCTC	3 cut(s)	832, 1997, 3104
Eco32I	GATATC	2 cut(s)	1500, 2065
Eco47I	GGWCC	4 cut(s)	67, 806, 2950, 3175
Eco52I	CGGCCG	2 cut(s)	128, 165
Eco53kI	GAGCTC	2 cut(s)	33, 181
Eco57I	CTGAAG	3 cut(s)	1021, 1240, 2243
Eco91I	GGTNACC	1 cut(s)	2075
EcoICRI	GAGCTC	2 cut(s)	33, 181
EcoNI	CCTNNNNNAGG	2 cut(s)	1509, 2277
EcoO109I	RGGNCCY	4 cut(s)	806, 1834, 2266, 2950
EcoO65I	GGTNACC	1 cut(s)	2075
EcoRII	CCWGG	7 cut(s)	14, 302, 584, 2051, 2239, 2956, 3150
EcoRV	GATATC	2 cut(s)	1500, 2065
EcoT14I	CCWWGG	4 cut(s)	1505, 1593, 1792, 2278
EcoT38I	GRGCYC	4 cut(s)	35, 183, 1837, 2270
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
ErhI	CCWWGG	4 cut(s)	1505, 1593, 1792, 2278
FalI	AAGNNNNNCTT	2 cut(s)	2679, 2711
FaqI	GGGAC	3 cut(s)	1695, 2577, 2963
FauI	CCCGC	2 cut(s)	2255, 3335
FblI	GTMKAC	2 cut(s)	2191, 2313
Fnu4HI	GCNGC	6 cut(s)	131, 750, 753, 894, 1908, 2505
FokI	GGATG	7 cut(s)	458, 1866, 2258, 2339, 2547, 3119, 3150
FriOI	GRGCYC	4 cut(s)	35, 183, 1837, 2270
FseI	GGCCGGCC	1 cut(s)	171
Fsp4HI	GCNGC	6 cut(s)	131, 750, 753, 894, 1908, 2505
FspBI	CTAG	9 cut(s)	291, 627, 729, 741, 963, 1074, 1506, 2492, 2681
GlaI	GCGC	4 cut(s)	192, 2454, 2642, 3297
GluI	GCNGC	6 cut(s)	131, 750, 753, 894, 1908, 2505
GsuI	CTGGAG	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	194
HapII	CCGG	8 cut(s)	28, 168, 176, 194, 204, 238, 381, 2947
HgaI	GACGC	3 cut(s)	351, 620, 885
HhaI	GCGC	4 cut(s)	193, 2455, 2643, 3298
Hin1I	GRCGYC	2 cut(s)	191, 896
Hin6I	GCGC	4 cut(s)	191, 2453, 2641, 3296
HinP1I	GCGC	4 cut(s)	191, 2453, 2641, 3296
HincII	GTYRAC	4 cut(s)	694, 1779, 1816, 2314
HindII	GTYRAC	4 cut(s)	694, 1779, 1816, 2314
HindIII	AAGCTT	1 cut(s)	1864
HpaI	GTTAAC	1 cut(s)	1816
HpaII	CCGG	8 cut(s)	28, 168, 176, 194, 204, 238, 381, 2947
HphI	GGTGA	3 cut(s)	615, 1494, 2087
Hpy166II	GTNNAC	8 cut(s)	471, 694, 1779, 1816, 2107, 2192, 2314, 3331
Hpy8I	GTNNAC	8 cut(s)	471, 694, 1779, 1816, 2107, 2192, 2314, 3331
Hpy99I	CGWCG	4 cut(s)	101, 119, 146, 1540
HpyCH4IV	ACGT	4 cut(s)	372, 1026, 1212, 1535
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 280, 1681, 2274, 2298
HpySE526I	ACGT	4 cut(s)	372, 1026, 1212, 1535
Hsp92I	GRCGYC	2 cut(s)	191, 896
HspAI	GCGC	4 cut(s)	191, 2453, 2641, 3296
KasI	GGCGCC	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	3044
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	1816
LguI	GCTCTTC	1 cut(s)	2697
LmnI	GCTCC	8 cut(s)	30, 38, 178, 232, 240, 1635, 1672, 2936
Lsp1109I	GCAGC	4 cut(s)	761, 764, 1894, 2491
LweI	GCATC	5 cut(s)	448, 857, 1260, 2236, 2695
MabI	ACCWGGT	2 cut(s)	2956, 3150
MaeI	CTAG	9 cut(s)	291, 627, 729, 741, 963, 1074, 1506, 2492, 2681
MaeII	ACGT	4 cut(s)	372, 1026, 1212, 1535
MaeIII	GTNAC	7 cut(s)	1489, 1597, 1822, 2075, 2141, 2174, 3143
MbiI	CCGCTC	1 cut(s)	893
MfeI	CAATTG	5 cut(s)	334, 944, 1139, 1246, 2160
MflI	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1750, 2226, 2825
MhlI	GDGCHC	6 cut(s)	35, 183, 237, 1837, 2270, 2560
MlsI	TGGCCA	1 cut(s)	3119
MluNI	TGGCCA	1 cut(s)	3119
Mly113I	GGCGCC	1 cut(s)	191
MlyI	GAGTC	3 cut(s)	1156, 2309, 3355
MmeI	TCCRAC	4 cut(s)	1384, 2102, 2803, 3250
Mox20I	TGGCCA	1 cut(s)	3119
MroI	TCCGGA	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	1034
MscI	TGGCCA	1 cut(s)	3119
MseI	TTAA	7 cut(s)	848, 912, 1517, 1815, 1868, 2171, 2378
MslI	CAYNNNNRTG	2 cut(s)	89, 2028
Msp20I	TGGCCA	1 cut(s)	3119
MspA1I	CMGCKG	2 cut(s)	133, 3342
MspCI	CTTAAG	1 cut(s)	2170
MspI	CCGG	8 cut(s)	28, 168, 176, 194, 204, 238, 381, 2947
MspR9I	CCNGG	9 cut(s)	16, 205, 304, 586, 2053, 2241, 2948, 2958, 3152
MunI	CAATTG	5 cut(s)	334, 944, 1139, 1246, 2160
Mva1269I	GAATGC	2 cut(s)	158, 1223
MvaI	CCWGG	7 cut(s)	16, 304, 586, 2053, 2241, 2958, 3152
MvnI	CGCG	2 cut(s)	3296, 3298
MwoI	GCNNNNNNNGC	5 cut(s)	164, 280, 1681, 2274, 2298
NaeI	GCCGGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	191
NciI	CCSGG	2 cut(s)	205, 2948
NgoMIV	GCCGGC	1 cut(s)	167
NmeAIII	GCCGAG	2 cut(s)	143, 282
NmuCI	GTSAC	5 cut(s)	1597, 1822, 2075, 2141, 3143
NspI	RCATGY	3 cut(s)	125, 980, 1895
NspV	TTCGAA	2 cut(s)	659, 1478
PaeI	GCATGC	1 cut(s)	980
PagI	TCATGA	1 cut(s)	1414
PciI	ACATGT	1 cut(s)	1891
PciSI	GCTCTTC	1 cut(s)	2697
PctI	GAATGC	2 cut(s)	158, 1223
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	1034
Pfl23II	CGTACG	1 cut(s)	217
PfoI	TCCNGGA	2 cut(s)	2051, 2946
PkrI	GCNGC	6 cut(s)	132, 751, 754, 895, 1909, 2506
PleI	GAGTC	3 cut(s)	1155, 2309, 3355
PluTI	GGCGCC	1 cut(s)	194
PpsI	GAGTC	3 cut(s)	1155, 2309, 3355
PpuMI	RGGWCCY	2 cut(s)	806, 2950
PscI	ACATGT	1 cut(s)	1891
PshAI	GACNNNNGTC	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	1728
Psp124BI	GAGCTC	2 cut(s)	35, 183
Psp5II	RGGWCCY	2 cut(s)	806, 2950
Psp6I	CCWGG	7 cut(s)	14, 302, 584, 2051, 2239, 2956, 3150
PspEI	GGTNACC	1 cut(s)	2075
PspGI	CCWGG	7 cut(s)	14, 302, 584, 2051, 2239, 2956, 3150
PspLI	CGTACG	1 cut(s)	217
PspOMI	GGGCCC	2 cut(s)	1833, 2266
PspPPI	RGGWCCY	2 cut(s)	806, 2950
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	8 cut(s)	152, 479, 722, 1090, 1154, 1750, 2226, 2825
RigI	GGCCGGCC	1 cut(s)	171
RsaI	GTAC	7 cut(s)	219, 1281, 2016, 2907, 3042, 3192, 3260
RsaNI	GTAC	7 cut(s)	218, 1280, 2015, 2906, 3041, 3191, 3259
RseI	CAYNNNNRTG	2 cut(s)	89, 2028
SacI	GAGCTC	2 cut(s)	35, 183
SalI	GTCGAC	1 cut(s)	2312
SapI	GCTCTTC	1 cut(s)	2697
SaqAI	TTAA	7 cut(s)	848, 912, 1517, 1815, 1868, 2171, 2378
SatI	GCNGC	6 cut(s)	131, 750, 753, 894, 1908, 2505
SchI	GAGTC	3 cut(s)	1156, 2309, 3355
ScrFI	CCNGG	9 cut(s)	16, 205, 304, 586, 2053, 2241, 2948, 2958, 3152
SduI	GDGCHC	6 cut(s)	35, 183, 237, 1837, 2270, 2560
SexAI	ACCWGGT	2 cut(s)	2956, 3150
SfaNI	GCATC	5 cut(s)	448, 857, 1260, 2236, 2695
SfcI	CTRYAG	2 cut(s)	606, 1443
SfoI	GGCGCC	1 cut(s)	192
SfuI	TTCGAA	2 cut(s)	659, 1478
SinI	GGWCC	4 cut(s)	67, 806, 2950, 3175
SmiMI	CAYNNNNRTG	2 cut(s)	89, 2028
SmlI	CTYRAG	4 cut(s)	871, 1230, 2008, 2170
SmoI	CTYRAG	4 cut(s)	871, 1230, 2008, 2170
SpeI	ACTAGT	1 cut(s)	1073
SphI	GCATGC	1 cut(s)	980
SsiI	CCGC	6 cut(s)	131, 893, 1132, 2262, 2627, 3342
SspDI	GGCGCC	1 cut(s)	190
SspMI	CTAG	9 cut(s)	291, 627, 729, 741, 963, 1074, 1506, 2492, 2681
SstI	GAGCTC	2 cut(s)	35, 183
StyD4I	CCNGG	9 cut(s)	14, 203, 302, 584, 2051, 2239, 2946, 2956, 3150
StyI	CCWWGG	4 cut(s)	1505, 1593, 1792, 2278
TaiI	ACGT	4 cut(s)	375, 1029, 1215, 1538
TaqII	GACCGA	1 cut(s)	3192
TatI	WGTACW	1 cut(s)	1279
TauI	GCSGC	2 cut(s)	133, 896
Tru1I	TTAA	7 cut(s)	848, 912, 1517, 1815, 1868, 2171, 2378
Tru9I	TTAA	7 cut(s)	848, 912, 1517, 1815, 1868, 2171, 2378
TscAI	CASTG	9 cut(s)	1370, 1606, 1849, 2146, 2293, 3021, 3127, 3193, 3360
TseFI	GTSAC	5 cut(s)	1597, 1822, 2075, 2141, 3143
TseI	GCWGC	4 cut(s)	749, 752, 1907, 2504
Tsp45I	GTSAC	5 cut(s)	1597, 1822, 2075, 2141, 3143
TspRI	CASTG	9 cut(s)	1370, 1606, 1849, 2146, 2293, 3021, 3127, 3193, 3360
Vha464I	CTTAAG	1 cut(s)	2170
VpaK11BI	GGWCC	4 cut(s)	67, 806, 2950, 3175
XagI	CCTNNNNNAGG	2 cut(s)	1509, 2277
XapI	RAATTY	6 cut(s)	769, 2039, 2857, 2941, 3373, 3408
XceI	RCATGY	3 cut(s)	125, 980, 1895
XcmI	CCANNNNNNNNNTGG	4 cut(s)	310, 685, 820, 2285
XmaJI	CCTAGG	1 cut(s)	1505
XmiI	GTMKAC	2 cut(s)	2191, 2313
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	9 cut(s)	291, 627, 729, 741, 963, 1074, 1506, 2492, 2681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.