Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

28050256 .. 28062973

Gene Structure 12718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3396 bp

ATGAAACCCAAACCCAGGCCCAAGCTCCGGAGCTCCAAATCCAAATCCAAATCGGAGTCCAATTCCCTGGCCGTCACGGTGTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCGCTGAACTTCGTCGATTCGAGATCTGCATTCTCGGCGGGCCTGCCGGAGCTCGCTTCGGCGCCGGAGATGGCCGGGAAAGACGGCGTAGGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCGCCGAGACTGTCTCCATTGCCCGATCTGCCCTCGCCCAGCAAGAAGGCAAGGGGTAGTTTGGGAAATGTGGCTATTGACAATTGTGTGAGGATGTCGCCCAGACTTGCGTCTGCTGACGTGGAAGCCGGAAAGGGCAAAACCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATAAAGAGAAAGATACTGAGAAGTTTACAAGGAGATCTCCGAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGACGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCAAAGGAGAAATGTCCTTCTAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCAAATTCCAATTCAAATTCTTCCATTGAATTGTCTGGTTCAAAAGGTAAGGGTTCTTCCAAGAAGATTATGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGAAGCTTGAGGCAATCTCCAATAAGAGCGACATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTACAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCAACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGATTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAATGATGATGGAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGCCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCAAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTGCGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGTCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTACCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTCGATAATGTAGAGAGAACTAATCGATCTAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGACTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATACAAGATTTTGTAAGAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAATGTCAACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCTCGTCCCACACATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCGTTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGATGATTATGCACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTAGGAAGAGACAATGTGGCTCGGAGGGATTTGACTGAAAAGCAGTCAGTGTTGCCATCTGGAAAGCCATTGGTACCAGACTATGCCTTTACTTTTGAACAAGGGAAGTCTAAAAGACCATTTGCGAGGTTATGGTGGGATGAGACCGTGGCCACTGTATTGACATTCCCAAGTTGTCACAACCAGGTTGTATTACATCCTGAGCAGGACCGAATCCTCACTCTACGAGAATGTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGCACGGTTAGAGAGAGATACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTTGCGCGAGCTTTAGGATATGCATTGGGATTGGCAGTTAACAAATCCAGCGGGAATGAACCACTGCTGACTCTCCCCCAAAATTTCTCTCATTCAAACTATTTTCAATTCACAGAAATTTTGCCCCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1131

Amino Acids

127.8

Weight (kDa)

8.55

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	416 - 523	9.6e-16	BAH domain
Chromo	PF00385	671 - 725	1.7e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	731 - 1095	9.6e-36	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	3010
AccB1I	GGYRCC	3 cut(s)	178, 1766, 3010
AccI	GTMKAC	2 cut(s)	1646, 2161
AccII	CGCG	1 cut(s)	3268
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	6 cut(s)	119, 155, 1120, 2232, 2597, 3312
AclWI	GGATC	4 cut(s)	430, 1073, 1310, 2803
AcoI	YGGCCR	4 cut(s)	69, 116, 189, 3087
AcsI	RAATTY	7 cut(s)	745, 757, 2009, 2827, 2911, 3343, 3378
AcuI	CTGAAG	2 cut(s)	1228, 2213
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	4 cut(s)	1269, 1760, 1986, 3012
AfiI	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
AflII	CTTAAG	1 cut(s)	2140
AflIII	ACRYGT	1 cut(s)	1861
AhlI	ACTAGT	1 cut(s)	1061
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	7 cut(s)	14, 66, 572, 2021, 2209, 2926, 3120
Alw21I	GWGCWC	4 cut(s)	35, 171, 225, 2530
AlwI	GGATC	4 cut(s)	430, 1073, 1310, 2803
AlwNI	CAGNNNCTG	1 cut(s)	602
Aor13HI	TCCGGA	1 cut(s)	27
ApaI	GGGCCC	2 cut(s)	1807, 2240
ApeKI	GCWGC	4 cut(s)	737, 740, 1877, 2474
ApoI	RAATTY	7 cut(s)	745, 757, 2009, 2827, 2911, 3343, 3378
Asp700I	GAANNNNTTC	1 cut(s)	1022
Asp718I	GGTACC	1 cut(s)	3010
AspA2I	CCTAGG	1 cut(s)	1493
AspLEI	GCGC	4 cut(s)	181, 2425, 2613, 3268
AspS9I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
AsuC2I	CCSGG	2 cut(s)	193, 2918
AsuHPI	GGTGA	3 cut(s)	603, 1482, 2057
AvaII	GGWCC	2 cut(s)	2920, 3145
AvrII	CCTAGG	1 cut(s)	1493
BaeGI	GKGCMC	2 cut(s)	1807, 2240
BalI	TGGCCA	1 cut(s)	3089
BanI	GGYRCC	3 cut(s)	178, 1766, 3010
BanII	GRGCYC	4 cut(s)	35, 171, 1807, 2240
BarI	GAAGNNNNNNTAC	2 cut(s)	781, 813
BauI	CACGAG	2 cut(s)	2643, 2877
BbsI	GAAGAC	2 cut(s)	2317, 2640
Bbv12I	GWGCWC	4 cut(s)	35, 171, 225, 2530
BbvI	GCAGC	4 cut(s)	749, 752, 1864, 2461
BceAI	ACGGC	3 cut(s)	56, 131, 217
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	7 cut(s)	16, 68, 574, 2023, 2211, 2928, 3122
BcnI	CCSGG	2 cut(s)	193, 2918
BcuI	ACTAGT	1 cut(s)	1061
BfaI	CTAG	8 cut(s)	615, 717, 729, 1062, 1494, 1965, 2462, 2651
BfmI	CTRYAG	3 cut(s)	594, 951, 1431
BfoI	RGCGCY	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	2140
BglII	AGATCT	6 cut(s)	140, 467, 710, 1142, 1720, 2196
BisI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
BlnI	CCTAGG	1 cut(s)	1493
BlsI	GCNGC	5 cut(s)	120, 739, 742, 1879, 2476
Bme1390I	CCNGG	9 cut(s)	16, 68, 193, 574, 2023, 2211, 2918, 2928, 3122
Bme18I	GGWCC	2 cut(s)	2920, 3145
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
BmrFI	CCNGG	9 cut(s)	16, 68, 193, 574, 2023, 2211, 2918, 2928, 3122
BmrI	ACTGGG	1 cut(s)	1677
BmsI	GCATC	3 cut(s)	1248, 2206, 2665
BmuI	ACTGGG	1 cut(s)	1677
BoxI	GACNNNNGTC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	2317, 2640
BplI	GAGNNNNNCTC	4 cut(s)	238, 270, 853, 885
Bpu10I	CCTNAGC	1 cut(s)	3138
BpuEI	CTTGAG	3 cut(s)	880, 1203, 1963
BpuMI	CCSGG	2 cut(s)	193, 2918
Bsa29I	ATCGAT	2 cut(s)	1960, 2845
BsaBI	GATNNNNATC	1 cut(s)	1966
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	3 cut(s)	820, 1967, 3074
BsaWI	WCCGGW	2 cut(s)	27, 225
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
Bse1I	ACTGG	3 cut(s)	1683, 1756, 2594
Bse3DI	GCAATG	3 cut(s)	257, 1518, 2620
Bse8I	GATNNNNATC	1 cut(s)	1966
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	7 cut(s)	16, 68, 574, 2023, 2211, 2928, 3122
BseCI	ATCGAT	2 cut(s)	1960, 2845
BseGI	GGATG	7 cut(s)	339, 1849, 2221, 2302, 2530, 3082, 3133
BseJI	GATNNNNATC	1 cut(s)	1966
BseLI	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
BseMI	GCAATG	3 cut(s)	257, 1518, 2620
BseMII	CTCAG	8 cut(s)	224, 441, 930, 975, 2381, 2440, 2529, 3129
BseNI	ACTGG	3 cut(s)	1683, 1756, 2594
BseSI	GKGCMC	2 cut(s)	1807, 2240
BseX3I	CGGCCG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	749, 752, 1864, 2461
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	2459
Bsh1236I	CGCG	1 cut(s)	3268
Bsh1285I	CGRYCG	1 cut(s)	119
BshNI	GGYRCC	3 cut(s)	178, 1766, 3010
BshVI	ATCGAT	2 cut(s)	1960, 2845
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	4 cut(s)	35, 171, 225, 2530
BsiSI	CCGG	7 cut(s)	28, 164, 182, 192, 226, 369, 2917
BslFI	GGGAC	3 cut(s)	1665, 2547, 2933
BslI	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
BsmFI	GGGAC	3 cut(s)	1665, 2547, 2933
BsmI	GAATGC	2 cut(s)	146, 1211
Bso31I	GGTCTC	3 cut(s)	820, 1967, 3074
Bsp120I	GGGCCC	2 cut(s)	1803, 2236
Bsp1286I	GDGCHC	6 cut(s)	35, 171, 225, 1807, 2240, 2530
Bsp13I	TCCGGA	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	1267
BspACI	CCGC	6 cut(s)	119, 155, 1120, 2232, 2597, 3312
BspCNI	CTCAG	8 cut(s)	225, 442, 931, 976, 2382, 2439, 2530, 3130
BspDI	ATCGAT	2 cut(s)	1960, 2845
BspEI	TCCGGA	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	3268
BspHI	TCATGA	1 cut(s)	1402
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	4 cut(s)	430, 1073, 1310, 2803
BspQI	GCTCTTC	1 cut(s)	2667
BspT107I	GGYRCC	3 cut(s)	178, 1766, 3010
BspTI	CTTAAG	1 cut(s)	2140
BspTNI	GGTCTC	3 cut(s)	820, 1967, 3074
BsrDI	GCAATG	3 cut(s)	257, 1518, 2620
BsrGI	TGTACA	1 cut(s)	1267
BsrI	ACTGG	3 cut(s)	1683, 1756, 2594
BssNAI	GTATAC	1 cut(s)	2162
BssNI	GRCGYC	1 cut(s)	179
BssSI	CACGAG	2 cut(s)	2643, 2877
BssT1I	CCWWGG	5 cut(s)	1249, 1493, 1581, 1762, 2248
Bst1107I	GTATAC	1 cut(s)	2162
Bst2BI	CACGAG	2 cut(s)	2643, 2877
Bst2UI	CCWGG	7 cut(s)	16, 68, 574, 2023, 2211, 2928, 3122
Bst6I	CTCTTC	3 cut(s)	1127, 2667, 2938
BstACI	GRCGYC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	2140
BstAUI	TGTACA	1 cut(s)	1267
BstC8I	GCNNGC	6 cut(s)	100, 157, 161, 171, 2066, 3270
BstDSI	CCRYGG	1 cut(s)	3084
BstEII	GGTNACC	1 cut(s)	2045
BstENI	CCTNNNNNAGG	2 cut(s)	1497, 2247
BstF5I	GGATG	7 cut(s)	339, 1849, 2221, 2302, 2530, 3082, 3133
BstFNI	CGCG	1 cut(s)	3268
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	4 cut(s)	181, 2425, 2613, 3268
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 268, 1245, 2244, 2268
BstNI	CCWGG	7 cut(s)	16, 68, 574, 2023, 2211, 2928, 3122
BstNSI	RCATGY	3 cut(s)	113, 968, 1865
BstPAI	GACNNNNGTC	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	2045
BstSCI	CCNGG	9 cut(s)	14, 66, 191, 572, 2021, 2209, 2916, 2926, 3120
BstSFI	CTRYAG	3 cut(s)	594, 951, 1431
BstSLI	GKGCMC	2 cut(s)	1807, 2240
BstUI	CGCG	1 cut(s)	3268
BstV1I	GCAGC	4 cut(s)	749, 752, 1864, 2461
BstV2I	GAAGAC	2 cut(s)	2317, 2640
BstX2I	RGATCY	8 cut(s)	140, 467, 710, 1078, 1142, 1720, 2196, 2795
BstXI	CCANNNNNNTGG	2 cut(s)	67, 1669
BstYI	RGATCY	8 cut(s)	140, 467, 710, 1078, 1142, 1720, 2196, 2795
BstZ17I	GTATAC	1 cut(s)	2162
BstZI	CGGCCG	1 cut(s)	116
Bsu15I	ATCGAT	2 cut(s)	1960, 2845
BsuTUI	ATCGAT	2 cut(s)	1960, 2845
BtgI	CCRYGG	1 cut(s)	3084
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	7 cut(s)	339, 1849, 2221, 2302, 2530, 3082, 3133
BtsI	GCAGTG	2 cut(s)	2116, 3323
BtsIMutI	CAGTG	7 cut(s)	1358, 1587, 1819, 2116, 2991, 3090, 3323
Cac8I	GCNNGC	6 cut(s)	100, 157, 161, 171, 2066, 3270
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	1402
CfoI	GCGC	4 cut(s)	181, 2425, 2613, 3268
Cfr13I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
ClaI	ATCGAT	2 cut(s)	1960, 2845
CseI	GACGC	3 cut(s)	339, 608, 1512
CsiI	ACCWGGT	2 cut(s)	2926, 3120
Csp6I	GTAC	4 cut(s)	1268, 1759, 1985, 3011
CviQI	GTAC	4 cut(s)	1268, 1759, 1985, 3011
DinI	GGCGCC	1 cut(s)	180
DraI	TTTAAA	1 cut(s)	837
EaeI	YGGCCR	4 cut(s)	69, 116, 189, 3087
EagI	CGGCCG	1 cut(s)	116
Eam1104I	CTCTTC	3 cut(s)	1127, 2667, 2938
EarI	CTCTTC	3 cut(s)	1127, 2667, 2938
EciI	GGCGGA	1 cut(s)	2586
Ecl136II	GAGCTC	2 cut(s)	33, 169
EclXI	CGGCCG	1 cut(s)	116
Eco130I	CCWWGG	5 cut(s)	1249, 1493, 1581, 1762, 2248
Eco24I	GRGCYC	4 cut(s)	35, 171, 1807, 2240
Eco31I	GGTCTC	3 cut(s)	820, 1967, 3074
Eco32I	GATATC	2 cut(s)	1488, 2035
Eco47I	GGWCC	2 cut(s)	2920, 3145
Eco52I	CGGCCG	1 cut(s)	116
Eco53kI	GAGCTC	2 cut(s)	33, 169
Eco57I	CTGAAG	2 cut(s)	1228, 2213
Eco91I	GGTNACC	1 cut(s)	2045
EcoICRI	GAGCTC	2 cut(s)	33, 169
EcoNI	CCTNNNNNAGG	2 cut(s)	1497, 2247
EcoO109I	RGGNCCY	3 cut(s)	1804, 2236, 2920
EcoO65I	GGTNACC	1 cut(s)	2045
EcoRII	CCWGG	7 cut(s)	14, 66, 572, 2021, 2209, 2926, 3120
EcoRV	GATATC	2 cut(s)	1488, 2035
EcoT14I	CCWWGG	5 cut(s)	1249, 1493, 1581, 1762, 2248
EcoT22I	ATGCAT	1 cut(s)	3286
EcoT38I	GRGCYC	4 cut(s)	35, 171, 1807, 2240
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
ErhI	CCWWGG	5 cut(s)	1249, 1493, 1581, 1762, 2248
FalI	AAGNNNNNCTT	2 cut(s)	2649, 2681
FaqI	GGGAC	3 cut(s)	1665, 2547, 2933
FauI	CCCGC	3 cut(s)	148, 2225, 3305
FblI	GTMKAC	2 cut(s)	1646, 2161
Fnu4HI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
FokI	GGATG	7 cut(s)	346, 1836, 2228, 2309, 2517, 3089, 3120
FriOI	GRGCYC	4 cut(s)	35, 171, 1807, 2240
Fsp4HI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
FspBI	CTAG	8 cut(s)	615, 717, 729, 1062, 1494, 1965, 2462, 2651
GlaI	GCGC	4 cut(s)	180, 2424, 2612, 3267
GluI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
GsaI	CCCAGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	7 cut(s)	28, 164, 182, 192, 226, 369, 2917
HgaI	GACGC	3 cut(s)	339, 608, 1512
HhaI	GCGC	4 cut(s)	181, 2425, 2613, 3268
Hin1I	GRCGYC	1 cut(s)	179
Hin6I	GCGC	4 cut(s)	179, 2423, 2611, 3266
HinP1I	GCGC	4 cut(s)	179, 2423, 2611, 3266
HincII	GTYRAC	5 cut(s)	682, 1749, 1786, 2284, 3301
HindII	GTYRAC	5 cut(s)	682, 1749, 1786, 2284, 3301
HindIII	AAGCTT	2 cut(s)	856, 1834
HpaI	GTTAAC	2 cut(s)	1786, 3301
HpaII	CCGG	7 cut(s)	28, 164, 182, 192, 226, 369, 2917
HphI	GGTGA	3 cut(s)	603, 1482, 2057
Hpy99I	CGWCG	4 cut(s)	89, 107, 134, 1528
HpyCH4IV	ACGT	3 cut(s)	360, 1014, 1200
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 268, 1245, 2244, 2268
HpySE526I	ACGT	3 cut(s)	360, 1014, 1200
Hsp92I	GRCGYC	1 cut(s)	179
HspAI	GCGC	4 cut(s)	179, 2423, 2611, 3266
KasI	GGCGCC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	3014
KspAI	GTTAAC	2 cut(s)	1786, 3301
LguI	GCTCTTC	1 cut(s)	2667
LmnI	GCTCC	8 cut(s)	30, 30, 38, 166, 220, 228, 1605, 2906
Lsp1109I	GCAGC	4 cut(s)	749, 752, 1864, 2461
LweI	GCATC	3 cut(s)	1248, 2206, 2665
MabI	ACCWGGT	2 cut(s)	2926, 3120
MaeI	CTAG	8 cut(s)	615, 717, 729, 1062, 1494, 1965, 2462, 2651
MaeII	ACGT	3 cut(s)	360, 1014, 1200
MaeIII	GTNAC	8 cut(s)	73, 1477, 1585, 1792, 2045, 2111, 2144, 3113
MfeI	CAATTG	5 cut(s)	322, 932, 1127, 1234, 2130
MflI	RGATCY	8 cut(s)	140, 467, 710, 1078, 1142, 1720, 2196, 2795
MhlI	GDGCHC	6 cut(s)	35, 171, 225, 1807, 2240, 2530
MlsI	TGGCCA	1 cut(s)	3089
MluNI	TGGCCA	1 cut(s)	3089
Mly113I	GGCGCC	1 cut(s)	179
MlyI	GAGTC	4 cut(s)	65, 1144, 1652, 3325
MmeI	TCCRAC	4 cut(s)	1372, 2072, 2773, 3220
Mox20I	TGGCCA	1 cut(s)	3089
Mph1103I	ATGCAT	1 cut(s)	3286
MroI	TCCGGA	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	1022
MscI	TGGCCA	1 cut(s)	3089
MseI	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
MslI	CAYNNNNRTG	2 cut(s)	1998, 2865
Msp20I	TGGCCA	1 cut(s)	3089
MspA1I	CMGCKG	2 cut(s)	121, 3312
MspCI	CTTAAG	1 cut(s)	2140
MspI	CCGG	7 cut(s)	28, 164, 182, 192, 226, 369, 2917
MspR9I	CCNGG	9 cut(s)	16, 68, 193, 574, 2023, 2211, 2918, 2928, 3122
MunI	CAATTG	5 cut(s)	322, 932, 1127, 1234, 2130
Mva1269I	GAATGC	2 cut(s)	146, 1211
MvaI	CCWGG	7 cut(s)	16, 68, 574, 2023, 2211, 2928, 3122
MvnI	CGCG	1 cut(s)	3268
MwoI	GCNNNNNNNGC	5 cut(s)	152, 268, 1245, 2244, 2268
NarI	GGCGCC	1 cut(s)	179
NciI	CCSGG	2 cut(s)	193, 2918
NmeAIII	GCCGAG	3 cut(s)	131, 270, 1906
NmuCI	GTSAC	6 cut(s)	73, 1585, 1792, 2045, 2111, 3113
NsiI	ATGCAT	1 cut(s)	3286
NspI	RCATGY	3 cut(s)	113, 968, 1865
PagI	TCATGA	1 cut(s)	1402
PciI	ACATGT	1 cut(s)	1861
PciSI	GCTCTTC	1 cut(s)	2667
PctI	GAATGC	2 cut(s)	146, 1211
PdmI	GAANNNNTTC	1 cut(s)	1022
PfoI	TCCNGGA	2 cut(s)	2021, 2916
PkrI	GCNGC	5 cut(s)	120, 739, 742, 1879, 2476
PleI	GAGTC	4 cut(s)	64, 1143, 1651, 3325
PluTI	GGCGCC	1 cut(s)	182
PpsI	GAGTC	4 cut(s)	64, 1143, 1651, 3325
PpuMI	RGGWCCY	1 cut(s)	2920
PscI	ACATGT	1 cut(s)	1861
PshAI	GACNNNNGTC	1 cut(s)	349
Psp124BI	GAGCTC	2 cut(s)	35, 171
Psp5II	RGGWCCY	1 cut(s)	2920
Psp6I	CCWGG	7 cut(s)	14, 66, 572, 2021, 2209, 2926, 3120
PspEI	GGTNACC	1 cut(s)	2045
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	7 cut(s)	14, 66, 572, 2021, 2209, 2926, 3120
PspOMI	GGGCCC	2 cut(s)	1803, 2236
PspPI	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
PspPPI	RGGWCCY	1 cut(s)	2920
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	8 cut(s)	140, 467, 710, 1078, 1142, 1720, 2196, 2795
RsaI	GTAC	4 cut(s)	1269, 1760, 1986, 3012
RsaNI	GTAC	4 cut(s)	1268, 1759, 1985, 3011
RseI	CAYNNNNRTG	2 cut(s)	1998, 2865
SacI	GAGCTC	2 cut(s)	35, 171
SapI	GCTCTTC	1 cut(s)	2667
SaqAI	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
SatI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
Sau96I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
SchI	GAGTC	4 cut(s)	65, 1144, 1652, 3325
ScrFI	CCNGG	9 cut(s)	16, 68, 193, 574, 2023, 2211, 2918, 2928, 3122
SduI	GDGCHC	6 cut(s)	35, 171, 225, 1807, 2240, 2530
SexAI	ACCWGGT	2 cut(s)	2926, 3120
SfaNI	GCATC	3 cut(s)	1248, 2206, 2665
SfcI	CTRYAG	3 cut(s)	594, 951, 1431
SfoI	GGCGCC	1 cut(s)	180
SinI	GGWCC	2 cut(s)	2920, 3145
SmiMI	CAYNNNNRTG	2 cut(s)	1998, 2865
SmlI	CTYRAG	4 cut(s)	859, 1218, 1978, 2140
SmoI	CTYRAG	4 cut(s)	859, 1218, 1978, 2140
SpeI	ACTAGT	1 cut(s)	1061
SsiI	CCGC	6 cut(s)	119, 155, 1120, 2232, 2597, 3312
SspDI	GGCGCC	1 cut(s)	178
SspMI	CTAG	8 cut(s)	615, 717, 729, 1062, 1494, 1965, 2462, 2651
SstI	GAGCTC	2 cut(s)	35, 171
StyD4I	CCNGG	9 cut(s)	14, 66, 191, 572, 2021, 2209, 2916, 2926, 3120
StyI	CCWWGG	5 cut(s)	1249, 1493, 1581, 1762, 2248
TaiI	ACGT	3 cut(s)	363, 1017, 1203
TaqI	TCGA	8 cut(s)	84, 132, 137, 425, 1938, 1960, 2503, 2845
TaqII	GACCGA	1 cut(s)	3162
TatI	WGTACW	1 cut(s)	1267
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
Tru9I	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
TscAI	CASTG	7 cut(s)	1358, 1594, 1819, 2116, 2991, 3097, 3330
TseFI	GTSAC	6 cut(s)	73, 1585, 1792, 2045, 2111, 3113
TseI	GCWGC	4 cut(s)	737, 740, 1877, 2474
Tsp45I	GTSAC	6 cut(s)	73, 1585, 1792, 2045, 2111, 3113
TspRI	CASTG	7 cut(s)	1358, 1594, 1819, 2116, 2991, 3097, 3330
Vha464I	CTTAAG	1 cut(s)	2140
VpaK11BI	GGWCC	2 cut(s)	2920, 3145
XagI	CCTNNNNNAGG	2 cut(s)	1497, 2247
XapI	RAATTY	7 cut(s)	745, 757, 2009, 2827, 2911, 3343, 3378
XbaI	TCTAGA	1 cut(s)	1964
XceI	RCATGY	3 cut(s)	113, 968, 1865
XcmI	CCANNNNNNNNNTGG	2 cut(s)	808, 2255
XmaJI	CCTAGG	1 cut(s)	1493
XmiI	GTMKAC	2 cut(s)	1646, 2161
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	8 cut(s)	615, 717, 729, 1062, 1494, 1965, 2462, 2651
Zsp2I	ATGCAT	1 cut(s)	3286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.