Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

2353844 .. 2355741

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01850.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATTTTCGGGTCTTTAACCCTCTGGATCCTTCGGTGTTTTTGGATCCTATGCTTTTGTGCACTCAAAGCATATCATCACATCCTCTGGTTATTATTGAAATTCCTGAAGCATAAAACAACGTGGTTTAGCTACTGTTTTGTTACTGCTACTTACAAAACTTGTGTGTTACCATATACATGGGAACCAATTGAAGGCTTAAGTAACTGCCAAGAAAGTATACAGGATTTTGTAAGAAATGGGAGGAAAGTGAAAATTTTGCCACTTCCAGTAAGTAGAGATGTTGATGTAATATGCGGGGGCCCTCCTTGCCAAGGAATTAGTGGCTATAATCACTATAGAAACGTTGTTTCTCCATTGGATGATGAGAGGAATCATCAAATTGTAGTCTTCATGGATATTGTAAACTTCTTGAAGCCAAAGTTTGTGCTGATGGAAAATGTTGTTGACATTTTGAGATTTGACAAAGCTTCTCTGGGAAGATATGCACTTAGTCGTTTGGTGGATATGAAGTACCAAGCGAGGCTGGGAATCCTTGCTGCTGGTTGTTATGGCCTTCCTCAATTTCGGTTGCGTGTTTTCTTGTGGGGTGCTCATGCTTGTGAGTCACACACATATACATGCACAGACAAAGCTAAAAGGCATGCCCAATGCATAAAATCCATAACCAGATTTATGAAACATAAGTCAAGCTCACTCAAATTCTCACGTTACCGTTTAATAATTCATTCATTCATTTTGGAAGGCCAAAAGAGCCTGACGTATTTTCCCCTCTTTTTTTTATCTTCGCAGAATCTGCCACAGTTTCCTCTTCCAACACATGATGTCATAATGAGATACTGGCCTCCACCAGAGTTCGAGCGGAACACTGTTGCTTACGATGAAGAACAACCTCGTGAATTATTAGAAAAAGCTCTTGTTCTTCGTGATGCCATCTCGGATCTTCCTTCTGTCTCAAACGATGAAAAAAGAGAAGAAATGCCATTCCAAAAGCCTCCTGAAACAGATTTCCAAAGATATATATTGATTTTTCTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

347

Amino Acids

40.53

Weight (kDa)

8.98

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	2 cut(s)	297, 862
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	5 cut(s)	22, 35, 40, 53, 948
AcsI	RAATTY	3 cut(s)	101, 255, 701
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	194, 314
AflII	CTTAAG	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	100, 194, 415
AluBI	AGCT	5 cut(s)	132, 470, 635, 693, 914
AluI	AGCT	5 cut(s)	132, 470, 635, 693, 914
Alw21I	GWGCWC	2 cut(s)	64, 595
Alw26I	GTCTC	1 cut(s)	958
Alw44I	GTGCAC	1 cut(s)	60
AlwI	GGATC	5 cut(s)	22, 35, 40, 53, 948
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	4 cut(s)	301, 553, 745, 842
ApaI	GGGCCC	1 cut(s)	305
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	3 cut(s)	101, 255, 701
AspS9I	GGNCC	2 cut(s)	301, 302
BaeGI	GKGCMC	2 cut(s)	64, 305
BamHI	GGATCC	2 cut(s)	27, 45
BanII	GRGCYC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	64, 595
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	427, 941
BcoDI	GTCTC	1 cut(s)	958
BfmI	CTRYAG	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	301, 302
BmiI	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
BmsI	GCATC	1 cut(s)	919
BpiI	GAAGAC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 314
Bse1I	ACTGG	2 cut(s)	269, 845
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	81, 367
BseLI	CCNNNNNNNGG	2 cut(s)	194, 314
BseNI	ACTGG	2 cut(s)	269, 845
BseSI	GKGCMC	2 cut(s)	64, 305
BseXI	GCAGC	1 cut(s)	526
BseYI	CCCAGC	1 cut(s)	526
BshFI	GGCC	4 cut(s)	303, 555, 747, 844
BsiHKAI	GWGCWC	2 cut(s)	64, 595
BslI	CCNNNNNNNGG	2 cut(s)	194, 314
BsmAI	GTCTC	1 cut(s)	958
BsnI	GGCC	4 cut(s)	303, 555, 747, 844
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	3 cut(s)	64, 305, 595
Bsp143I	GATC	3 cut(s)	27, 45, 940
BspACI	CCGC	2 cut(s)	297, 862
BspANI	GGCC	4 cut(s)	303, 555, 747, 844
BspLI	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
BspPI	GGATC	5 cut(s)	22, 35, 40, 53, 948
BspTI	CTTAAG	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	269, 845
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	27, 45, 940
BssNAI	GTATAC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	894
Bst4CI	ACNGT	4 cut(s)	137, 716, 804, 871
Bst6I	CTCTTC	1 cut(s)	816
BstAFI	CTTAAG	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	81, 367
BstKTI	GATC	3 cut(s)	30, 48, 943
BstMAI	GTCTC	1 cut(s)	958
BstMBI	GATC	3 cut(s)	27, 45, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 309, 753, 796
BstNSI	RCATGY	2 cut(s)	624, 647
BstSFI	CTRYAG	1 cut(s)	337
BstSLI	GKGCMC	2 cut(s)	64, 305
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	3 cut(s)	27, 45, 940
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	3 cut(s)	27, 45, 940
BstZ17I	GTATAC	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	303, 555, 747, 844
BtsCI	GGATG	2 cut(s)	81, 367
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	1 cut(s)	645
CaiI	CAGNNNCTG	1 cut(s)	796
Cfr13I	GGNCC	2 cut(s)	301, 302
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	6 cut(s)	180, 394, 596, 621, 644, 821
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	3 cut(s)	29, 47, 942
DpnII	GATC	3 cut(s)	27, 45, 940
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	301, 302
EcoT14I	CCWWGG	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
FatI	CATG	6 cut(s)	179, 393, 595, 620, 643, 820
FauI	CCCGC	1 cut(s)	290
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	68, 374
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	4 cut(s)	303, 555, 747, 844
Hin1II	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	4 cut(s)	373, 531, 605, 793
Hpy166II	GTNNAC	4 cut(s)	62, 221, 406, 448
Hpy188I	TCNGA	1 cut(s)	940
Hpy188III	TCNNGA	6 cut(s)	25, 106, 412, 896, 926, 998
Hpy8I	GTNNAC	4 cut(s)	62, 221, 406, 448
HpyAV	CCTTC	5 cut(s)	41, 188, 566, 737, 957
HpyCH4III	ACNGT	4 cut(s)	137, 716, 804, 871
HpyCH4IV	ACGT	4 cut(s)	122, 345, 709, 761
HpyCH4V	TGCA	4 cut(s)	62, 488, 624, 654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 309, 753, 796
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	4 cut(s)	122, 345, 709, 761
Hsp92II	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
Kzo9I	GATC	3 cut(s)	27, 45, 940
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	1 cut(s)	919
MaeII	ACGT	4 cut(s)	122, 345, 709, 761
MaeIII	GTNAC	5 cut(s)	142, 168, 203, 606, 710
MalI	GATC	3 cut(s)	29, 47, 942
MbiI	CCGCTC	1 cut(s)	862
MboI	GATC	3 cut(s)	27, 45, 940
MboII	GAAGA	8 cut(s)	382, 492, 777, 803, 896, 914, 935, 986
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	3 cut(s)	27, 45, 940
MhlI	GDGCHC	3 cut(s)	64, 305, 595
MluCI	AATT	9 cut(s)	101, 189, 255, 318, 381, 563, 701, 723, 899
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	839
Mph1103I	ATGCAT	1 cut(s)	656
MseI	TTAA	3 cut(s)	17, 200, 719
MslI	CAYNNNNRTG	3 cut(s)	178, 600, 619
MspCI	CTTAAG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	68, 309, 753, 796
NdeII	GATC	3 cut(s)	27, 45, 940
NlaIII	CATG	6 cut(s)	183, 397, 599, 624, 647, 824
NlaIV	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
NmuCI	GTSAC	1 cut(s)	606
NsiI	ATGCAT	1 cut(s)	656
NspI	RCATGY	2 cut(s)	624, 647
PaeI	GCATGC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	373, 531, 793
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
Psp1406I	AACGTT	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	526
PspN4I	GGNNCC	5 cut(s)	29, 47, 186, 302, 303
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	301, 302
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	3 cut(s)	27, 45, 940
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	3 cut(s)	178, 600, 619
SaqAI	TTAA	3 cut(s)	17, 200, 719
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	3 cut(s)	27, 45, 940
Sau96I	GGNCC	2 cut(s)	301, 302
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	3 cut(s)	64, 305, 595
SfaNI	GCATC	1 cut(s)	919
SfcI	CTRYAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	3 cut(s)	178, 600, 619
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	9 cut(s)	101, 189, 255, 318, 381, 563, 701, 723, 899
SsiI	CCGC	2 cut(s)	297, 862
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	137, 716, 804, 871
TaiI	ACGT	4 cut(s)	125, 348, 712, 764
TaqI	TCGA	1 cut(s)	858
TasI	AATT	9 cut(s)	101, 189, 255, 318, 381, 563, 701, 723, 899
TfiI	GAWTC	3 cut(s)	373, 531, 793
Tru1I	TTAA	3 cut(s)	17, 200, 719
Tru9I	TTAA	3 cut(s)	17, 200, 719
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	8 cut(s)	382, 524, 692, 716, 720, 724, 897, 978
TspRI	CASTG	1 cut(s)	874
Vha464I	CTTAAG	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	312
XapI	RAATTY	3 cut(s)	101, 255, 701
XceI	RCATGY	2 cut(s)	624, 647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.