Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

29345710 .. 29358979

Gene Structure 13270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2979 bp

ATGGGATCGAATGGGGATAAAGAGAAAGATACTGAGAAGTTTACAAGGAGATCTCCGAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGACGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCAAAGGAGAAATGTCCTTCTAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCAAATTCCAATTCAAATTCTTCCATTGAATTGTCTGGTTCAAAAGGTAAGGGTTCTTCCAAGAAGATTATGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGAAGCTTGAGGCAATCTCCAATAAGAGCGACATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTACAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCAACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGATTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAATGATGATGGAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGCCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCAAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTGCGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGTCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTACCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTCGATAATGTAGAGAGAACTAATCGATCTAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGACTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATACAAGATTTTGTAAGAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAATGTCAACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCTCGTCCCACACATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCGTTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGATGATTATGCACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTAGGAAGAGACAATGTGGCTCGGAGGGATTTGACTGAAAAGCAGTCAGTGTTGCCATCTGGAAAGCCATTGGTACCAGACTATGCCTTTACTTTTGAACAAGGGAAGTCTAAAAGACCATTTGCGAGGTTATGGTGGGATGAGACCGTGGCCACTGTATTGACATTCCCAAGTTGTCACAACCAGGTTGTATTACATCCTGAGCAGGACCGAATCCTCACTCTACGAGAATGTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGCACGGTTAGAGAGAGATACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTTGCGCGAGCTTTAGGATATGCATTGGGATTGGCAGTTAACAAATCCAGCGGGAATGAACCACTGCTGACTCTCCCCCAAAATTTCTCTCATTCAAACTATTTTCAATTCACAGAAATTTTGCCCCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

992

Amino Acids

112.94

Weight (kDa)

7.82

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	277 - 384	8e-16	BAH domain
Chromo	PF00385	532 - 586	1.4e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	592 - 956	7.3e-36	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2593
AccB1I	GGYRCC	2 cut(s)	1349, 2593
AccI	GTMKAC	2 cut(s)	1229, 1744
AccII	CGCG	1 cut(s)	2851
AciI	CCGC	4 cut(s)	703, 1815, 2180, 2895
AclWI	GGATC	4 cut(s)	13, 656, 893, 2386
AcoI	YGGCCR	1 cut(s)	2670
AcsI	RAATTY	7 cut(s)	328, 340, 1592, 2410, 2494, 2926, 2961
AcuI	CTGAAG	2 cut(s)	811, 1796
AfaI	GTAC	4 cut(s)	852, 1343, 1569, 2595
AfiI	CCNNNNNNNGG	5 cut(s)	316, 1082, 1718, 1793, 1832
AflII	CTTAAG	1 cut(s)	1723
AflIII	ACRYGT	1 cut(s)	1444
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	5 cut(s)	155, 1604, 1792, 2509, 2703
Alw21I	GWGCWC	1 cut(s)	2113
Alw26I	GTCTC	8 cut(s)	403, 518, 563, 1254, 1550, 1580, 2523, 2657
AlwI	GGATC	4 cut(s)	13, 656, 893, 2386
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	6 cut(s)	159, 1386, 1819, 2071, 2174, 2670
ApaI	GGGCCC	2 cut(s)	1390, 1823
ApeKI	GCWGC	4 cut(s)	320, 323, 1460, 2057
ApoI	RAATTY	7 cut(s)	328, 340, 1592, 2410, 2494, 2926, 2961
Asp700I	GAANNNNTTC	1 cut(s)	605
Asp718I	GGTACC	1 cut(s)	2593
AspA2I	CCTAGG	1 cut(s)	1076
AspLEI	GCGC	3 cut(s)	2008, 2196, 2851
AspS9I	GGNCC	7 cut(s)	159, 1386, 1387, 1819, 1820, 2503, 2728
AsuC2I	CCSGG	1 cut(s)	2501
AsuHPI	GGTGA	3 cut(s)	186, 1065, 1640
AvaII	GGWCC	2 cut(s)	2503, 2728
AvrII	CCTAGG	1 cut(s)	1076
BaeGI	GKGCMC	2 cut(s)	1390, 1823
BalI	TGGCCA	1 cut(s)	2672
BanI	GGYRCC	2 cut(s)	1349, 2593
BanII	GRGCYC	2 cut(s)	1390, 1823
BarI	GAAGNNNNNNTAC	2 cut(s)	364, 396
BauI	CACGAG	2 cut(s)	2226, 2460
BbsI	GAAGAC	2 cut(s)	1900, 2223
Bbv12I	GWGCWC	1 cut(s)	2113
BbvI	GCAGC	4 cut(s)	332, 335, 1447, 2044
BccI	CCATC	9 cut(s)	425, 687, 752, 905, 1945, 2270, 2365, 2433, 2584
BciT130I	CCWGG	5 cut(s)	157, 1606, 1794, 2511, 2705
BcnI	CCSGG	1 cut(s)	2501
BcoDI	GTCTC	8 cut(s)	403, 518, 563, 1254, 1550, 1580, 2523, 2657
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	8 cut(s)	198, 300, 312, 645, 1077, 1548, 2045, 2234
BfmI	CTRYAG	3 cut(s)	177, 534, 1014
BfrI	CTTAAG	1 cut(s)	1723
BglII	AGATCT	5 cut(s)	50, 293, 725, 1303, 1779
BisI	GCNGC	4 cut(s)	321, 324, 1461, 2058
BlnI	CCTAGG	1 cut(s)	1076
BlsI	GCNGC	4 cut(s)	322, 325, 1462, 2059
Bme1390I	CCNGG	6 cut(s)	157, 1606, 1794, 2501, 2511, 2705
Bme18I	GGWCC	2 cut(s)	2503, 2728
BmgT120I	GGNCC	7 cut(s)	159, 1386, 1387, 1819, 1820, 2503, 2728
BmiI	GGNNCC	8 cut(s)	1190, 1351, 1388, 1710, 1820, 1821, 2504, 2595
BmrFI	CCNGG	6 cut(s)	157, 1606, 1794, 2501, 2511, 2705
BmrI	ACTGGG	1 cut(s)	1260
BmsI	GCATC	3 cut(s)	831, 1789, 2248
BmuI	ACTGGG	1 cut(s)	1260
BpiI	GAAGAC	2 cut(s)	1900, 2223
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu10I	CCTNAGC	1 cut(s)	2721
BpuEI	CTTGAG	3 cut(s)	463, 786, 1546
BpuMI	CCSGG	1 cut(s)	2501
Bsa29I	ATCGAT	2 cut(s)	1543, 2428
BsaBI	GATNNNNATC	1 cut(s)	1549
BsaI	GGTCTC	3 cut(s)	403, 1550, 2657
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 1082, 1718, 1793, 1832
Bse1I	ACTGG	3 cut(s)	1266, 1339, 2177
Bse3DI	GCAATG	2 cut(s)	1101, 2203
Bse8I	GATNNNNATC	1 cut(s)	1549
BseBI	CCWGG	5 cut(s)	157, 1606, 1794, 2511, 2705
BseCI	ATCGAT	2 cut(s)	1543, 2428
BseGI	GGATG	6 cut(s)	1432, 1804, 1885, 2113, 2665, 2716
BseJI	GATNNNNATC	1 cut(s)	1549
BseLI	CCNNNNNNNGG	5 cut(s)	316, 1082, 1718, 1793, 1832
BseMI	GCAATG	2 cut(s)	1101, 2203
BseMII	CTCAG	7 cut(s)	24, 513, 558, 1964, 2023, 2112, 2712
BseNI	ACTGG	3 cut(s)	1266, 1339, 2177
BseSI	GKGCMC	2 cut(s)	1390, 1823
BseXI	GCAGC	4 cut(s)	332, 335, 1447, 2044
BsgI	GTGCAG	1 cut(s)	2042
Bsh1236I	CGCG	1 cut(s)	2851
BshFI	GGCC	6 cut(s)	161, 1388, 1821, 2073, 2176, 2672
BshNI	GGYRCC	2 cut(s)	1349, 2593
BshVI	ATCGAT	2 cut(s)	1543, 2428
BsiHKAI	GWGCWC	1 cut(s)	2113
BsiSI	CCGG	1 cut(s)	2500
BslFI	GGGAC	3 cut(s)	1248, 2130, 2516
BslI	CCNNNNNNNGG	5 cut(s)	316, 1082, 1718, 1793, 1832
BsmAI	GTCTC	8 cut(s)	403, 518, 563, 1254, 1550, 1580, 2523, 2657
BsmFI	GGGAC	3 cut(s)	1248, 2130, 2516
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	6 cut(s)	161, 1388, 1821, 2073, 2176, 2672
Bso31I	GGTCTC	3 cut(s)	403, 1550, 2657
Bsp120I	GGGCCC	2 cut(s)	1386, 1819
Bsp1286I	GDGCHC	3 cut(s)	1390, 1823, 2113
Bsp1407I	TGTACA	1 cut(s)	850
BspACI	CCGC	4 cut(s)	703, 1815, 2180, 2895
BspANI	GGCC	6 cut(s)	161, 1388, 1821, 2073, 2176, 2672
BspCNI	CTCAG	7 cut(s)	25, 514, 559, 1965, 2022, 2113, 2713
BspDI	ATCGAT	2 cut(s)	1543, 2428
BspFNI	CGCG	1 cut(s)	2851
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	8 cut(s)	1190, 1351, 1388, 1710, 1820, 1821, 2504, 2595
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	4 cut(s)	13, 656, 893, 2386
BspQI	GCTCTTC	1 cut(s)	2250
BspT107I	GGYRCC	2 cut(s)	1349, 2593
BspTI	CTTAAG	1 cut(s)	1723
BspTNI	GGTCTC	3 cut(s)	403, 1550, 2657
BsrDI	GCAATG	2 cut(s)	1101, 2203
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	3 cut(s)	1266, 1339, 2177
BssNAI	GTATAC	1 cut(s)	1745
BssSI	CACGAG	2 cut(s)	2226, 2460
BssT1I	CCWWGG	5 cut(s)	832, 1076, 1164, 1345, 1831
Bst1107I	GTATAC	1 cut(s)	1745
Bst2BI	CACGAG	2 cut(s)	2226, 2460
Bst2UI	CCWGG	5 cut(s)	157, 1606, 1794, 2511, 2705
Bst6I	CTCTTC	3 cut(s)	710, 2250, 2521
BstAFI	CTTAAG	1 cut(s)	1723
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	2 cut(s)	1649, 2853
BstDSI	CCRYGG	1 cut(s)	2667
BstEII	GGTNACC	1 cut(s)	1628
BstENI	CCTNNNNNAGG	2 cut(s)	1080, 1830
BstF5I	GGATG	6 cut(s)	1432, 1804, 1885, 2113, 2665, 2716
BstFNI	CGCG	1 cut(s)	2851
BstHHI	GCGC	3 cut(s)	2008, 2196, 2851
BstMAI	GTCTC	8 cut(s)	403, 518, 563, 1254, 1550, 1580, 2523, 2657
BstMWI	GCNNNNNNNGC	3 cut(s)	828, 1827, 1851
BstNI	CCWGG	5 cut(s)	157, 1606, 1794, 2511, 2705
BstNSI	RCATGY	2 cut(s)	551, 1448
BstPI	GGTNACC	1 cut(s)	1628
BstSCI	CCNGG	6 cut(s)	155, 1604, 1792, 2499, 2509, 2703
BstSFI	CTRYAG	3 cut(s)	177, 534, 1014
BstSLI	GKGCMC	2 cut(s)	1390, 1823
BstUI	CGCG	1 cut(s)	2851
BstV1I	GCAGC	4 cut(s)	332, 335, 1447, 2044
BstV2I	GAAGAC	2 cut(s)	1900, 2223
BstX2I	RGATCY	7 cut(s)	50, 293, 661, 725, 1303, 1779, 2378
BstXI	CCANNNNNNTGG	1 cut(s)	1252
BstYI	RGATCY	7 cut(s)	50, 293, 661, 725, 1303, 1779, 2378
BstZ17I	GTATAC	1 cut(s)	1745
Bsu15I	ATCGAT	2 cut(s)	1543, 2428
BsuRI	GGCC	6 cut(s)	161, 1388, 1821, 2073, 2176, 2672
BsuTUI	ATCGAT	2 cut(s)	1543, 2428
BtgI	CCRYGG	1 cut(s)	2667
BtsCI	GGATG	6 cut(s)	1432, 1804, 1885, 2113, 2665, 2716
BtsI	GCAGTG	2 cut(s)	1699, 2906
BtsIMutI	CAGTG	7 cut(s)	941, 1170, 1402, 1699, 2574, 2673, 2906
Cac8I	GCNNGC	2 cut(s)	1649, 2853
CaiI	CAGNNNCTG	1 cut(s)	185
CciI	TCATGA	1 cut(s)	985
CfoI	GCGC	3 cut(s)	2008, 2196, 2851
Cfr13I	GGNCC	7 cut(s)	159, 1386, 1387, 1819, 1820, 2503, 2728
ClaI	ATCGAT	2 cut(s)	1543, 2428
CseI	GACGC	2 cut(s)	191, 1095
CsiI	ACCWGGT	2 cut(s)	2509, 2703
Csp6I	GTAC	4 cut(s)	851, 1342, 1568, 2594
CviAII	CATG	8 cut(s)	163, 548, 742, 986, 1445, 1704, 1912, 2153
CviQI	GTAC	4 cut(s)	851, 1342, 1568, 2594
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	2670
Eam1104I	CTCTTC	3 cut(s)	710, 2250, 2521
EarI	CTCTTC	3 cut(s)	710, 2250, 2521
EciI	GGCGGA	1 cut(s)	2169
Eco130I	CCWWGG	5 cut(s)	832, 1076, 1164, 1345, 1831
Eco24I	GRGCYC	2 cut(s)	1390, 1823
Eco31I	GGTCTC	3 cut(s)	403, 1550, 2657
Eco32I	GATATC	2 cut(s)	1071, 1618
Eco47I	GGWCC	2 cut(s)	2503, 2728
Eco57I	CTGAAG	2 cut(s)	811, 1796
Eco91I	GGTNACC	1 cut(s)	1628
EcoNI	CCTNNNNNAGG	2 cut(s)	1080, 1830
EcoO109I	RGGNCCY	3 cut(s)	1387, 1819, 2503
EcoO65I	GGTNACC	1 cut(s)	1628
EcoRII	CCWGG	5 cut(s)	155, 1604, 1792, 2509, 2703
EcoRV	GATATC	2 cut(s)	1071, 1618
EcoT14I	CCWWGG	5 cut(s)	832, 1076, 1164, 1345, 1831
EcoT22I	ATGCAT	1 cut(s)	2869
EcoT38I	GRGCYC	2 cut(s)	1390, 1823
ErhI	CCWWGG	5 cut(s)	832, 1076, 1164, 1345, 1831
FaeI	CATG	8 cut(s)	166, 551, 745, 989, 1448, 1707, 1915, 2156
FalI	AAGNNNNNCTT	2 cut(s)	2232, 2264
FaqI	GGGAC	3 cut(s)	1248, 2130, 2516
FatI	CATG	8 cut(s)	162, 547, 741, 985, 1444, 1703, 1911, 2152
FauI	CCCGC	2 cut(s)	1808, 2888
FblI	GTMKAC	2 cut(s)	1229, 1744
Fnu4HI	GCNGC	4 cut(s)	321, 324, 1461, 2058
FokI	GGATG	6 cut(s)	1419, 1811, 1892, 2100, 2672, 2703
FriOI	GRGCYC	2 cut(s)	1390, 1823
Fsp4HI	GCNGC	4 cut(s)	321, 324, 1461, 2058
FspBI	CTAG	8 cut(s)	198, 300, 312, 645, 1077, 1548, 2045, 2234
GlaI	GCGC	3 cut(s)	2007, 2195, 2850
GluI	GCNGC	4 cut(s)	321, 324, 1461, 2058
HaeIII	GGCC	6 cut(s)	161, 1388, 1821, 2073, 2176, 2672
HapII	CCGG	1 cut(s)	2500
HgaI	GACGC	2 cut(s)	191, 1095
HhaI	GCGC	3 cut(s)	2008, 2196, 2851
Hin1II	CATG	8 cut(s)	166, 551, 745, 989, 1448, 1707, 1915, 2156
Hin6I	GCGC	3 cut(s)	2006, 2194, 2849
HinP1I	GCGC	3 cut(s)	2006, 2194, 2849
HincII	GTYRAC	5 cut(s)	265, 1332, 1369, 1867, 2884
HindII	GTYRAC	5 cut(s)	265, 1332, 1369, 1867, 2884
HindIII	AAGCTT	2 cut(s)	439, 1417
HpaI	GTTAAC	2 cut(s)	1369, 2884
HpaII	CCGG	1 cut(s)	2500
HphI	GGTGA	3 cut(s)	186, 1065, 1640
Hpy99I	CGWCG	1 cut(s)	1111
HpyAV	CCTTC	8 cut(s)	255, 616, 857, 1480, 1672, 1992, 2084, 2127
HpyCH4IV	ACGT	2 cut(s)	597, 783
HpyF10VI	GCNNNNNNNGC	3 cut(s)	828, 1827, 1851
HpySE526I	ACGT	2 cut(s)	597, 783
Hsp92II	CATG	8 cut(s)	166, 551, 745, 989, 1448, 1707, 1915, 2156
HspAI	GCGC	3 cut(s)	2006, 2194, 2849
KpnI	GGTACC	1 cut(s)	2597
KspAI	GTTAAC	2 cut(s)	1369, 2884
LguI	GCTCTTC	1 cut(s)	2250
LmnI	GCTCC	2 cut(s)	1188, 2489
Lsp1109I	GCAGC	4 cut(s)	332, 335, 1447, 2044
LweI	GCATC	3 cut(s)	831, 1789, 2248
MabI	ACCWGGT	2 cut(s)	2509, 2703
MaeI	CTAG	8 cut(s)	198, 300, 312, 645, 1077, 1548, 2045, 2234
MaeII	ACGT	2 cut(s)	597, 783
MaeIII	GTNAC	7 cut(s)	1060, 1168, 1375, 1628, 1694, 1727, 2696
MfeI	CAATTG	4 cut(s)	515, 710, 817, 1713
MflI	RGATCY	7 cut(s)	50, 293, 661, 725, 1303, 1779, 2378
MhlI	GDGCHC	3 cut(s)	1390, 1823, 2113
MlsI	TGGCCA	1 cut(s)	2672
MluNI	TGGCCA	1 cut(s)	2672
MlyI	GAGTC	3 cut(s)	727, 1235, 2908
MmeI	TCCRAC	4 cut(s)	955, 1655, 2356, 2803
Mox20I	TGGCCA	1 cut(s)	2672
Mph1103I	ATGCAT	1 cut(s)	2869
MroXI	GAANNNNTTC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	2672
MseI	TTAA	8 cut(s)	419, 483, 1088, 1368, 1421, 1724, 1931, 2883
MslI	CAYNNNNRTG	2 cut(s)	1581, 2448
Msp20I	TGGCCA	1 cut(s)	2672
MspA1I	CMGCKG	1 cut(s)	2895
MspCI	CTTAAG	1 cut(s)	1723
MspI	CCGG	1 cut(s)	2500
MspR9I	CCNGG	6 cut(s)	157, 1606, 1794, 2501, 2511, 2705
MunI	CAATTG	4 cut(s)	515, 710, 817, 1713
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	5 cut(s)	157, 1606, 1794, 2511, 2705
MvnI	CGCG	1 cut(s)	2851
MwoI	GCNNNNNNNGC	3 cut(s)	828, 1827, 1851
NciI	CCSGG	1 cut(s)	2501
NlaIII	CATG	8 cut(s)	166, 551, 745, 989, 1448, 1707, 1915, 2156
NlaIV	GGNNCC	8 cut(s)	1190, 1351, 1388, 1710, 1820, 1821, 2504, 2595
NmeAIII	GCCGAG	1 cut(s)	1489
NmuCI	GTSAC	5 cut(s)	1168, 1375, 1628, 1694, 2696
NsiI	ATGCAT	1 cut(s)	2869
NspI	RCATGY	2 cut(s)	551, 1448
PagI	TCATGA	1 cut(s)	985
PciI	ACATGT	1 cut(s)	1444
PciSI	GCTCTTC	1 cut(s)	2250
PctI	GAATGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	9 cut(s)	67, 134, 227, 580, 667, 1429, 2125, 2473, 2733
PfoI	TCCNGGA	2 cut(s)	1604, 2499
PkrI	GCNGC	4 cut(s)	322, 325, 1462, 2059
PleI	GAGTC	3 cut(s)	726, 1234, 2908
PpsI	GAGTC	3 cut(s)	726, 1234, 2908
PpuMI	RGGWCCY	1 cut(s)	2503
PscI	ACATGT	1 cut(s)	1444
Psp5II	RGGWCCY	1 cut(s)	2503
Psp6I	CCWGG	5 cut(s)	155, 1604, 1792, 2509, 2703
PspEI	GGTNACC	1 cut(s)	1628
PspGI	CCWGG	5 cut(s)	155, 1604, 1792, 2509, 2703
PspN4I	GGNNCC	8 cut(s)	1190, 1351, 1388, 1710, 1820, 1821, 2504, 2595
PspOMI	GGGCCC	2 cut(s)	1386, 1819
PspPI	GGNCC	7 cut(s)	159, 1386, 1387, 1819, 1820, 2503, 2728
PspPPI	RGGWCCY	1 cut(s)	2503
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	7 cut(s)	50, 293, 661, 725, 1303, 1779, 2378
RsaI	GTAC	4 cut(s)	852, 1343, 1569, 2595
RsaNI	GTAC	4 cut(s)	851, 1342, 1568, 2594
RseI	CAYNNNNRTG	2 cut(s)	1581, 2448
SapI	GCTCTTC	1 cut(s)	2250
SaqAI	TTAA	8 cut(s)	419, 483, 1088, 1368, 1421, 1724, 1931, 2883
SatI	GCNGC	4 cut(s)	321, 324, 1461, 2058
Sau96I	GGNCC	7 cut(s)	159, 1386, 1387, 1819, 1820, 2503, 2728
SchI	GAGTC	3 cut(s)	727, 1235, 2908
ScrFI	CCNGG	6 cut(s)	157, 1606, 1794, 2501, 2511, 2705
SduI	GDGCHC	3 cut(s)	1390, 1823, 2113
SexAI	ACCWGGT	2 cut(s)	2509, 2703
SfaNI	GCATC	3 cut(s)	831, 1789, 2248
SfcI	CTRYAG	3 cut(s)	177, 534, 1014
SinI	GGWCC	2 cut(s)	2503, 2728
SmiMI	CAYNNNNRTG	2 cut(s)	1581, 2448
SmlI	CTYRAG	4 cut(s)	442, 801, 1561, 1723
SmoI	CTYRAG	4 cut(s)	442, 801, 1561, 1723
SpeI	ACTAGT	1 cut(s)	644
SsiI	CCGC	4 cut(s)	703, 1815, 2180, 2895
SspMI	CTAG	8 cut(s)	198, 300, 312, 645, 1077, 1548, 2045, 2234
StyD4I	CCNGG	6 cut(s)	155, 1604, 1792, 2499, 2509, 2703
StyI	CCWWGG	5 cut(s)	832, 1076, 1164, 1345, 1831
TaiI	ACGT	2 cut(s)	600, 786
TaqI	TCGA	5 cut(s)	8, 1521, 1543, 2086, 2428
TaqII	GACCGA	1 cut(s)	2745
TatI	WGTACW	1 cut(s)	850
TfiI	GAWTC	9 cut(s)	67, 134, 227, 580, 667, 1429, 2125, 2473, 2733
Tru1I	TTAA	8 cut(s)	419, 483, 1088, 1368, 1421, 1724, 1931, 2883
Tru9I	TTAA	8 cut(s)	419, 483, 1088, 1368, 1421, 1724, 1931, 2883
TscAI	CASTG	7 cut(s)	941, 1177, 1402, 1699, 2574, 2680, 2913
TseFI	GTSAC	5 cut(s)	1168, 1375, 1628, 1694, 2696
TseI	GCWGC	4 cut(s)	320, 323, 1460, 2057
Tsp45I	GTSAC	5 cut(s)	1168, 1375, 1628, 1694, 2696
TspRI	CASTG	7 cut(s)	941, 1177, 1402, 1699, 2574, 2680, 2913
Vha464I	CTTAAG	1 cut(s)	1723
VpaK11BI	GGWCC	2 cut(s)	2503, 2728
XagI	CCTNNNNNAGG	2 cut(s)	1080, 1830
XapI	RAATTY	7 cut(s)	328, 340, 1592, 2410, 2494, 2926, 2961
XbaI	TCTAGA	1 cut(s)	1547
XceI	RCATGY	2 cut(s)	551, 1448
XcmI	CCANNNNNNNNNTGG	2 cut(s)	391, 1838
XmaJI	CCTAGG	1 cut(s)	1076
XmiI	GTMKAC	2 cut(s)	1229, 1744
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	8 cut(s)	198, 300, 312, 645, 1077, 1548, 2045, 2234
Zsp2I	ATGCAT	1 cut(s)	2869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.