Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

40785352 .. 40796214

Gene Structure 10863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2823 bp

ATGAAACCCAAACCCAGGCCCAAGCTCCGGAGCTCCAAATCCAAATCGGACCCCGACTCCCTCGCCCTCACGGTCTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCACTGAACTTCGTCGATTCGAGATCTGCATTCTCGGCCGGCCTGCCGGAGCTCACTTCGGGGCCGGAGATGGCCGGGAAAGACGGCGTGCGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCGCCGAGACTGTCTCCATTGCCCGATCTGGCCTCGCCTAGCAAGAAGGCCAGGGGTAGTTTCGGAAATGTGGCTATTGACAGTTGTGTGAGGAGGTCGCCCAGACTTGCGTCTGCTGACGTGGGAGCTGGGAAGGGCAAAACTGATAGTACCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATGAAGAGAAAGATACTGAGAAGTTTACAAGGAGATCTCCTAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACCAGAGTTATCTTCGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCGATATCATTGAGAACTGCAGAAGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCGAAGGAGAAATGCCCTTCCAAGAAGATTTTGGTCAACAAATTGAATGAGAAGCACATAAGAAGATCTCCTAGACTTTCCCCTAGTGTGGCAGCAGCTAATTCCAAATCAAATTCTTCCATTGAATTGCCTGGTTCAAAAGGTAAGGGTCCTTCCAAGAAGATTAGGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGATGCTTGAGGCAATCTCCAATAAGAGCGGCATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTAGAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTGGTGAATCAACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGTGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGACGCACAAGAAAGATGGGGTTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAACGATGATAAAGAAGATGAGATAATTTTGAACGTGGAGTGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGACGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTGTTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCGAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTACGTCATCTGACTTCTACTATGATATGGAATACTGCGTAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGAGCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGCCTACCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAATTGAATCATCCAGAAACACATGTAAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTAGATAATGTAGAGAGAACTAATCGATCAAGATCAGAGACCTCAAGAGTACCCAAGCACGATGATGAGATTGAATTCGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATACAAGATTTTGTAAGAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGTGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAATGTCGACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTTCCCCAATTTCCTCGTCCCACACATGATGTTATTATTAGATACTGGCCTCCCCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCATTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGGTAATATTAATACTCGGAATCTGCTCTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

941

Amino Acids

106.05

Weight (kDa)

8.56

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	417 - 526	6.2e-16	BAH domain
Chromo	PF00385	672 - 726	1.3e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	732 - 917	1.8e-19	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1769
AccBSI	CCGCTC	1 cut(s)	884
AccI	GTMKAC	3 cut(s)	1563, 2164, 2286
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	3 cut(s)	202, 884, 1123
AclWI	GGATC	3 cut(s)	433, 1076, 1313
AcoI	YGGCCR	3 cut(s)	110, 147, 183
AcsI	RAATTY	2 cut(s)	760, 2012
AcuI	CTGAAG	2 cut(s)	1231, 2216
AfaI	GTAC	3 cut(s)	385, 1272, 1989
AfiI	CCNNNNNNNGG	7 cut(s)	15, 27, 736, 1502, 2138, 2213, 2252
AflII	CTTAAG	1 cut(s)	2143
AflIII	ACRYGT	1 cut(s)	1864
AhlI	ACTAGT	1 cut(s)	1064
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	6 cut(s)	14, 284, 575, 778, 2024, 2212
Alw21I	GWGCWC	4 cut(s)	35, 165, 219, 2533
Alw26I	GTCTC	7 cut(s)	235, 252, 823, 938, 983, 1674, 1970
AlwI	GGATC	3 cut(s)	433, 1076, 1313
AlwNI	CAGNNNCTG	1 cut(s)	605
Aor13HI	TCCGGA	1 cut(s)	27
ApaI	GGGCCC	2 cut(s)	1810, 2243
ApeKI	GCWGC	5 cut(s)	740, 743, 1880, 2477, 2817
ApoI	RAATTY	2 cut(s)	760, 2012
AseI	ATTAAT	1 cut(s)	2796
Asp700I	GAANNNNTTC	1 cut(s)	1025
AspA2I	CCTAGG	2 cut(s)	476, 1496
AspLEI	GCGC	2 cut(s)	2428, 2616
AspS9I	GGNCC	8 cut(s)	18, 49, 173, 797, 1806, 1807, 2239, 2240
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	4 cut(s)	606, 1009, 1485, 2060
AsuII	TTCGAA	3 cut(s)	650, 1469, 2016
AvaII	GGWCC	2 cut(s)	49, 797
AvrII	CCTAGG	2 cut(s)	476, 1496
BaeGI	GKGCMC	2 cut(s)	1810, 2243
BanI	GGYRCC	1 cut(s)	1769
BanII	GRGCYC	4 cut(s)	35, 165, 1810, 2243
BarI	GAAGNNNNNNTAC	2 cut(s)	784, 816
BauI	CACGAG	1 cut(s)	2646
BbsI	GAAGAC	3 cut(s)	67, 2320, 2643
Bbv12I	GWGCWC	4 cut(s)	35, 165, 219, 2533
BbvI	GCAGC	4 cut(s)	752, 755, 1867, 2464
BccI	CCATC	5 cut(s)	175, 845, 1107, 2365, 2690
BceAI	ACGGC	2 cut(s)	125, 211
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	6 cut(s)	16, 286, 577, 780, 2026, 2214
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	7 cut(s)	235, 252, 823, 938, 983, 1674, 1970
BcuI	ACTAGT	1 cut(s)	1064
BfmI	CTRYAG	3 cut(s)	597, 1434, 2815
BfrI	CTTAAG	1 cut(s)	2143
BglII	AGATCT	6 cut(s)	134, 470, 713, 1145, 1723, 2199
BisI	GCNGC	6 cut(s)	741, 744, 885, 1881, 2478, 2818
BlnI	CCTAGG	2 cut(s)	476, 1496
BlsI	GCNGC	6 cut(s)	742, 745, 886, 1882, 2479, 2819
Bme1390I	CCNGG	7 cut(s)	16, 187, 286, 577, 780, 2026, 2214
Bme18I	GGWCC	2 cut(s)	49, 797
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	8 cut(s)	18, 49, 173, 797, 1806, 1807, 2239, 2240
BmrFI	CCNGG	7 cut(s)	16, 187, 286, 577, 780, 2026, 2214
BmrI	ACTGGG	1 cut(s)	1680
BmsI	GCATC	5 cut(s)	848, 896, 1251, 2209, 2668
BmuI	ACTGGG	1 cut(s)	1680
BoxI	GACNNNNGTC	1 cut(s)	343
BpiI	GAAGAC	3 cut(s)	67, 2320, 2643
BplI	GAGNNNNNCTC	4 cut(s)	232, 264, 856, 888
Bpu14I	TTCGAA	3 cut(s)	650, 1469, 2016
BpuEI	CTTGAG	3 cut(s)	883, 1206, 1966
BpuMI	CCSGG	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	1963
BsaBI	GATNNNNATC	1 cut(s)	1969
BsaI	GGTCTC	2 cut(s)	823, 1970
BsaWI	WCCGGW	2 cut(s)	27, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 27, 736, 1502, 2138, 2213, 2252
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	3 cut(s)	1686, 1759, 2597
Bse3DI	GCAATG	2 cut(s)	251, 2623
Bse8I	GATNNNNATC	1 cut(s)	1969
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	6 cut(s)	16, 286, 577, 780, 2026, 2214
BseCI	ATCGAT	1 cut(s)	1963
BseGI	GGATG	5 cut(s)	442, 1852, 2224, 2305, 2533
BseJI	GATNNNNATC	1 cut(s)	1969
BseLI	CCNNNNNNNGG	7 cut(s)	15, 27, 736, 1502, 2138, 2213, 2252
BseMI	GCAATG	2 cut(s)	251, 2623
BseMII	CTCAG	7 cut(s)	218, 444, 933, 978, 2384, 2443, 2532
BseNI	ACTGG	3 cut(s)	1686, 1759, 2597
BseRI	GAGGAG	1 cut(s)	340
BseSI	GKGCMC	2 cut(s)	1810, 2243
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	752, 755, 1867, 2464
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	2462
Bsh1285I	CGRYCG	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	1769
BshVI	ATCGAT	1 cut(s)	1963
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	4 cut(s)	35, 165, 219, 2533
BsiSI	CCGG	6 cut(s)	28, 150, 158, 176, 186, 220
BslFI	GGGAC	2 cut(s)	1668, 2550
BslI	CCNNNNNNNGG	7 cut(s)	15, 27, 736, 1502, 2138, 2213, 2252
BsmAI	GTCTC	7 cut(s)	235, 252, 823, 938, 983, 1674, 1970
BsmFI	GGGAC	2 cut(s)	1668, 2550
BsmI	GAATGC	1 cut(s)	140
Bso31I	GGTCTC	2 cut(s)	823, 1970
Bsp119I	TTCGAA	3 cut(s)	650, 1469, 2016
Bsp120I	GGGCCC	2 cut(s)	1806, 2239
Bsp1286I	GDGCHC	6 cut(s)	35, 165, 219, 1810, 2243, 2533
Bsp13I	TCCGGA	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	1270
BspACI	CCGC	3 cut(s)	202, 884, 1123
BspCNI	CTCAG	7 cut(s)	219, 445, 934, 979, 2385, 2442, 2533
BspDI	ATCGAT	1 cut(s)	1963
BspEI	TCCGGA	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	1405
BspMAI	CTGCAG	2 cut(s)	601, 2819
BspPI	GGATC	3 cut(s)	433, 1076, 1313
BspQI	GCTCTTC	1 cut(s)	2670
BspT104I	TTCGAA	3 cut(s)	650, 1469, 2016
BspT107I	GGYRCC	1 cut(s)	1769
BspTI	CTTAAG	1 cut(s)	2143
BspTNI	GGTCTC	2 cut(s)	823, 1970
BsrBI	CCGCTC	1 cut(s)	884
BsrDI	GCAATG	2 cut(s)	251, 2623
BsrFI	RCCGGY	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	3 cut(s)	1686, 1759, 2597
BssAI	RCCGGY	1 cut(s)	149
BssNAI	GTATAC	1 cut(s)	2165
BssSI	CACGAG	1 cut(s)	2646
BssT1I	CCWWGG	5 cut(s)	476, 1496, 1584, 1765, 2251
Bst1107I	GTATAC	1 cut(s)	2165
Bst2BI	CACGAG	1 cut(s)	2646
Bst2UI	CCWGG	6 cut(s)	16, 286, 577, 780, 2026, 2214
Bst6I	CTCTTC	3 cut(s)	435, 1130, 2670
BstAFI	CTTAAG	1 cut(s)	2143
BstAUI	TGTACA	1 cut(s)	1270
BstBI	TTCGAA	3 cut(s)	650, 1469, 2016
BstC8I	GCNNGC	5 cut(s)	94, 151, 155, 200, 2069
BstDEI	CTNAG	8 cut(s)	227, 453, 942, 987, 1604, 2393, 2429, 2541
BstEII	GGTNACC	1 cut(s)	2048
BstENI	CCTNNNNNAGG	2 cut(s)	1500, 2250
BstF5I	GGATG	5 cut(s)	442, 1852, 2224, 2305, 2533
BstHHI	GCGC	2 cut(s)	2428, 2616
BstMAI	GTCTC	7 cut(s)	235, 252, 823, 938, 983, 1674, 1970
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 208, 1654, 2247, 2271
BstNI	CCWGG	6 cut(s)	16, 286, 577, 780, 2026, 2214
BstNSI	RCATGY	3 cut(s)	107, 971, 1868
BstPAI	GACNNNNGTC	1 cut(s)	343
BstPI	GGTNACC	1 cut(s)	2048
BstSCI	CCNGG	7 cut(s)	14, 185, 284, 575, 778, 2024, 2212
BstSFI	CTRYAG	3 cut(s)	597, 1434, 2815
BstSLI	GKGCMC	2 cut(s)	1810, 2243
BstV1I	GCAGC	4 cut(s)	752, 755, 1867, 2464
BstV2I	GAAGAC	3 cut(s)	67, 2320, 2643
BstX2I	RGATCY	7 cut(s)	134, 470, 713, 1081, 1145, 1723, 2199
BstXI	CCANNNNNNTGG	1 cut(s)	1672
BstYI	RGATCY	7 cut(s)	134, 470, 713, 1081, 1145, 1723, 2199
BstZ17I	GTATAC	1 cut(s)	2165
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	1963
BsuTUI	ATCGAT	1 cut(s)	1963
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	5 cut(s)	442, 1852, 2224, 2305, 2533
BtsI	GCAGTG	1 cut(s)	2119
BtsIMutI	CAGTG	5 cut(s)	113, 1361, 1590, 1822, 2119
Cac8I	GCNNGC	5 cut(s)	94, 151, 155, 200, 2069
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	1405
CfoI	GCGC	2 cut(s)	2428, 2616
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	8 cut(s)	18, 49, 173, 797, 1806, 1807, 2239, 2240
ClaI	ATCGAT	1 cut(s)	1963
CseI	GACGC	2 cut(s)	333, 1109
Csp6I	GTAC	3 cut(s)	384, 1271, 1988
CviAII	CATG	9 cut(s)	104, 421, 968, 1162, 1406, 1865, 2124, 2332, 2573
CviQI	GTAC	3 cut(s)	384, 1271, 1988
DdeI	CTNAG	8 cut(s)	227, 453, 942, 987, 1604, 2393, 2429, 2541
DraI	TTTAAA	1 cut(s)	840
EaeI	YGGCCR	3 cut(s)	110, 147, 183
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	435, 1130, 2670
EarI	CTCTTC	3 cut(s)	435, 1130, 2670
Ecl136II	GAGCTC	2 cut(s)	33, 163
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	5 cut(s)	476, 1496, 1584, 1765, 2251
Eco24I	GRGCYC	4 cut(s)	35, 165, 1810, 2243
Eco31I	GGTCTC	2 cut(s)	823, 1970
Eco32I	GATATC	3 cut(s)	585, 1491, 2038
Eco47I	GGWCC	2 cut(s)	49, 797
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	33, 163
Eco57I	CTGAAG	2 cut(s)	1231, 2216
Eco91I	GGTNACC	1 cut(s)	2048
EcoICRI	GAGCTC	2 cut(s)	33, 163
EcoNI	CCTNNNNNAGG	2 cut(s)	1500, 2250
EcoO109I	RGGNCCY	3 cut(s)	797, 1807, 2239
EcoO65I	GGTNACC	1 cut(s)	2048
EcoRI	GAATTC	1 cut(s)	2012
EcoRII	CCWGG	6 cut(s)	14, 284, 575, 778, 2024, 2212
EcoRV	GATATC	3 cut(s)	585, 1491, 2038
EcoT14I	CCWWGG	5 cut(s)	476, 1496, 1584, 1765, 2251
EcoT38I	GRGCYC	4 cut(s)	35, 165, 1810, 2243
ErhI	CCWWGG	5 cut(s)	476, 1496, 1584, 1765, 2251
FaeI	CATG	9 cut(s)	107, 424, 971, 1165, 1409, 1868, 2127, 2335, 2576
FalI	AAGNNNNNCTT	2 cut(s)	2652, 2684
FaqI	GGGAC	2 cut(s)	1668, 2550
FatI	CATG	9 cut(s)	103, 420, 967, 1161, 1405, 1864, 2123, 2331, 2572
FauI	CCCGC	1 cut(s)	195
FblI	GTMKAC	3 cut(s)	1563, 2164, 2286
Fnu4HI	GCNGC	6 cut(s)	741, 744, 885, 1881, 2478, 2818
FokI	GGATG	5 cut(s)	449, 1839, 2231, 2312, 2520
FriOI	GRGCYC	4 cut(s)	35, 165, 1810, 2243
FseI	GGCCGGCC	1 cut(s)	153
Fsp4HI	GCNGC	6 cut(s)	741, 744, 885, 1881, 2478, 2818
GlaI	GCGC	2 cut(s)	2427, 2615
GluI	GCNGC	6 cut(s)	741, 744, 885, 1881, 2478, 2818
GsaI	CCCAGC	1 cut(s)	366
HapII	CCGG	6 cut(s)	28, 150, 158, 176, 186, 220
HgaI	GACGC	2 cut(s)	333, 1109
HhaI	GCGC	2 cut(s)	2428, 2616
Hin1II	CATG	9 cut(s)	107, 424, 971, 1165, 1409, 1868, 2127, 2335, 2576
Hin6I	GCGC	2 cut(s)	2426, 2614
HinP1I	GCGC	2 cut(s)	2426, 2614
HincII	GTYRAC	5 cut(s)	685, 1099, 1752, 1789, 2287
HindII	GTYRAC	5 cut(s)	685, 1099, 1752, 1789, 2287
HindIII	AAGCTT	1 cut(s)	1837
HpaI	GTTAAC	1 cut(s)	1789
HpaII	CCGG	6 cut(s)	28, 150, 158, 176, 186, 220
HphI	GGTGA	4 cut(s)	606, 1009, 1485, 2060
Hpy99I	CGWCG	3 cut(s)	83, 101, 128
HpyCH4IV	ACGT	4 cut(s)	354, 1017, 1203, 1526
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 208, 1654, 2247, 2271
HpyF3I	CTNAG	8 cut(s)	227, 453, 942, 987, 1604, 2393, 2429, 2541
HpySE526I	ACGT	4 cut(s)	354, 1017, 1203, 1526
Hsp92II	CATG	9 cut(s)	107, 424, 971, 1165, 1409, 1868, 2127, 2335, 2576
HspAI	GCGC	2 cut(s)	2426, 2614
Kpn2I	TCCGGA	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	1789
LguI	GCTCTTC	1 cut(s)	2670
LmnI	GCTCC	9 cut(s)	30, 30, 38, 160, 214, 222, 359, 1608, 1645
Lsp1109I	GCAGC	4 cut(s)	752, 755, 1867, 2464
LweI	GCATC	5 cut(s)	848, 896, 1251, 2209, 2668
MaeII	ACGT	4 cut(s)	354, 1017, 1203, 1526
MaeIII	GTNAC	6 cut(s)	1480, 1588, 1795, 2048, 2114, 2147
MbiI	CCGCTC	1 cut(s)	884
MfeI	CAATTG	4 cut(s)	935, 1130, 1237, 2133
MflI	RGATCY	7 cut(s)	134, 470, 713, 1081, 1145, 1723, 2199
MhlI	GDGCHC	6 cut(s)	35, 165, 219, 1810, 2243, 2533
MlyI	GAGTC	3 cut(s)	50, 1147, 2282
MmeI	TCCRAC	2 cut(s)	1375, 2075
MroI	TCCGGA	1 cut(s)	27
MroNI	GCCGGC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	1025
MseI	TTAA	8 cut(s)	839, 903, 1508, 1788, 1841, 2144, 2351, 2796
MslI	CAYNNNNRTG	1 cut(s)	2001
MspCI	CTTAAG	1 cut(s)	2143
MspI	CCGG	6 cut(s)	28, 150, 158, 176, 186, 220
MspR9I	CCNGG	7 cut(s)	16, 187, 286, 577, 780, 2026, 2214
MunI	CAATTG	4 cut(s)	935, 1130, 1237, 2133
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	6 cut(s)	16, 286, 577, 780, 2026, 2214
MwoI	GCNNNNNNNGC	5 cut(s)	146, 208, 1654, 2247, 2271
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	187
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	9 cut(s)	107, 424, 971, 1165, 1409, 1868, 2127, 2335, 2576
NmeAIII	GCCGAG	3 cut(s)	125, 264, 1909
NmuCI	GTSAC	4 cut(s)	1588, 1795, 2048, 2114
NspI	RCATGY	3 cut(s)	107, 971, 1868
NspV	TTCGAA	3 cut(s)	650, 1469, 2016
PagI	TCATGA	1 cut(s)	1405
PciI	ACATGT	1 cut(s)	1864
PciSI	GCTCTTC	1 cut(s)	2670
PctI	GAATGC	1 cut(s)	140
PdiI	GCCGGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	1025
PfeI	GAWTC	9 cut(s)	128, 487, 554, 647, 1000, 1087, 1849, 2545, 2806
PfoI	TCCNGGA	1 cut(s)	2024
PkrI	GCNGC	6 cut(s)	742, 745, 886, 1882, 2479, 2819
PleI	GAGTC	3 cut(s)	50, 1146, 2282
PpsI	GAGTC	3 cut(s)	50, 1146, 2282
PpuMI	RGGWCCY	1 cut(s)	797
PscI	ACATGT	1 cut(s)	1864
PshAI	GACNNNNGTC	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	2796
Psp124BI	GAGCTC	2 cut(s)	35, 165
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	6 cut(s)	14, 284, 575, 778, 2024, 2212
PspEI	GGTNACC	1 cut(s)	2048
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	6 cut(s)	14, 284, 575, 778, 2024, 2212
PspOMI	GGGCCC	2 cut(s)	1806, 2239
PspPI	GGNCC	8 cut(s)	18, 49, 173, 797, 1806, 1807, 2239, 2240
PspPPI	RGGWCCY	1 cut(s)	797
PstI	CTGCAG	2 cut(s)	601, 2819
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	7 cut(s)	134, 470, 713, 1081, 1145, 1723, 2199
RigI	GGCCGGCC	1 cut(s)	153
RsaI	GTAC	3 cut(s)	385, 1272, 1989
RsaNI	GTAC	3 cut(s)	384, 1271, 1988
RseI	CAYNNNNRTG	1 cut(s)	2001
SacI	GAGCTC	2 cut(s)	35, 165
SalI	GTCGAC	1 cut(s)	2285
SapI	GCTCTTC	1 cut(s)	2670
SaqAI	TTAA	8 cut(s)	839, 903, 1508, 1788, 1841, 2144, 2351, 2796
SatI	GCNGC	6 cut(s)	741, 744, 885, 1881, 2478, 2818
Sau96I	GGNCC	8 cut(s)	18, 49, 173, 797, 1806, 1807, 2239, 2240
SchI	GAGTC	3 cut(s)	50, 1147, 2282
ScrFI	CCNGG	7 cut(s)	16, 187, 286, 577, 780, 2026, 2214
SduI	GDGCHC	6 cut(s)	35, 165, 219, 1810, 2243, 2533
SfaNI	GCATC	5 cut(s)	848, 896, 1251, 2209, 2668
SfcI	CTRYAG	3 cut(s)	597, 1434, 2815
SfuI	TTCGAA	3 cut(s)	650, 1469, 2016
SinI	GGWCC	2 cut(s)	49, 797
SmiMI	CAYNNNNRTG	1 cut(s)	2001
SmlI	CTYRAG	4 cut(s)	862, 1221, 1981, 2143
SmoI	CTYRAG	4 cut(s)	862, 1221, 1981, 2143
SpeI	ACTAGT	1 cut(s)	1064
SsiI	CCGC	3 cut(s)	202, 884, 1123
SspI	AATATT	1 cut(s)	2794
SstI	GAGCTC	2 cut(s)	35, 165
StyD4I	CCNGG	7 cut(s)	14, 185, 284, 575, 778, 2024, 2212
StyI	CCWWGG	5 cut(s)	476, 1496, 1584, 1765, 2251
TaiI	ACGT	4 cut(s)	357, 1020, 1206, 1529
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	9 cut(s)	128, 487, 554, 647, 1000, 1087, 1849, 2545, 2806
Tru1I	TTAA	8 cut(s)	839, 903, 1508, 1788, 1841, 2144, 2351, 2796
Tru9I	TTAA	8 cut(s)	839, 903, 1508, 1788, 1841, 2144, 2351, 2796
TscAI	CASTG	5 cut(s)	120, 1361, 1597, 1822, 2119
TseFI	GTSAC	4 cut(s)	1588, 1795, 2048, 2114
TseI	GCWGC	5 cut(s)	740, 743, 1880, 2477, 2817
Tsp45I	GTSAC	4 cut(s)	1588, 1795, 2048, 2114
TspGWI	ACGGA	1 cut(s)	1347
TspRI	CASTG	5 cut(s)	120, 1361, 1597, 1822, 2119
Vha464I	CTTAAG	1 cut(s)	2143
VpaK11BI	GGWCC	2 cut(s)	49, 797
VspI	ATTAAT	1 cut(s)	2796
XagI	CCTNNNNNAGG	2 cut(s)	1500, 2250
XapI	RAATTY	2 cut(s)	760, 2012
XceI	RCATGY	3 cut(s)	107, 971, 1868
XcmI	CCANNNNNNNNNTGG	2 cut(s)	676, 2258
XmaJI	CCTAGG	2 cut(s)	476, 1496
XmiI	GTMKAC	3 cut(s)	1563, 2164, 2286
XmnI	GAANNNNTTC	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.