Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Forward (+)

30090805 .. 30104051

Gene Structure 13247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3396 bp

ATGAAACCCAAACCCAGGCCCAAGCTCCGGAGCTCCAAATCCAAATCCAAATCGGAGTCCAATTCCCTGGCCGTCACGGTGTTCGACGAGAATGTGGCTTGCGACGAACATGCACGGCCGCTGAACTTCGTCGATTCGAGATCTGCATTCTCGGAGGGCCTGCCGGAGCTGACTTCGGCGCCGGAGATGGCCGGGAAAGACGGCGTACGGGAAATGCAGGAGCACCGGAGCCTGAGAAGGTCGCCGAGACTGTCTCCATTGCCCGATCTGCCCTCGCCTAGCAAGAAGGCCAGGGGTAGTTTGGGAAATGTGGCTATTGACAATTGTGTGAGGAGCTCGCCTAGACTTGCGTCTGCTGACGTGGAAGCCGGAAACGGCAAAACCTTTGTTCAGCATAAGAAGTGCAAGGGTGGAAGCATGGGATCGAATGGGGATGAAAAGAAAGATACTGAGAAGTTTACAAGGACATCTCCGAGGTTGATGAATCAGTCTGAAATGAAATGTTGCTATCCAAAAGTTTCAACACAAGAGTTATCTTTGAGAAACTTGGAATCCTGTGAAAAGGGCTGTTCCAGGGCCATGTCATTGAGAACTGCAGATGCTGAAAGATCACCTAGAGATATAAAACTTGAACACTTATCTGATTCAAAGGAGAAATGTCCTTCTAAGAAGATTTTGGTCAACACATTGAATGAGAAGCACATAAGAAGATCTCCTAGATTTTCCCCTAGTGTGGCAGCAGCAAATTCCAATTCAAATTCTTCCATTGAATTGTCCGGTTCAAAAGGTATGGGTTCTTCCAAGAAGATTATGGTCTCATTAGGAACATCTGATTTAAAATGTTTTGATGGGAGATGCTTGAGGCAATCTCCAATAAGAGCGACATCTATGTTTGAGGTTAAAAGAAAAGAAACAGAATGTGCTTTCATTCAATTGCCTGAGACTGAAACTAGAGAAACAGAACATGCTTTTATTGAATTGCCTGAGACATTTGTGAATCAACCTCCAAAGAACGTGAAAACCTTCGGTTCTTCAAAAAACAGAAAAAAGAACTGCGAAACTAGTTTCTTTATCGGAGATCCGATTCCTGATGTTGAAGCACAAGAAAGATGGGGTTGGCGGTATCAATTGAAGAGTCAAAGATCTAACAGTCAGAGCATGAAGCTAAACGATGATGGAGAAGATGAGATAATTTTGAACGTGGAATGCCATTTTGCTCAAGCTAAAATTGGCAATTGCATCTTCAGTCTTGGGGATTGTGTATATGTACAGGGTAATGAAGGAAAAAAAGATGTGGGGAGGATCATAGAGTTTTTCAAGACAACTGATGGAGAAAATTATTTCAGAGTTCAGTGGTTTTATAGGGTTGAAGATACTGTTATCAAAGAAGTTGGAAGTTTTCATGACAAGAGGCGTTTATTCTATTCAACTGTAGTGAACGATAATTTGATAGATTGCATTATTTCGAAAGTCAATGTTACACAGATATCACCTAGGGTAGGATTAAAAGTGAAATCCATTGCGTCGTCTGACTTCTACTATGATATGGAATACTGCATAGACTATTCCACATTTCGCACCTTGGTCACTGATAATTCTCTTAGGATCCATAGCTTCTCATCAAGCAATTTGATAGAAATGGAGTCTGCCTTGCAAACTGCCAAGTCTCTGGGGAACAGTCCCAGTTGTGATACTTACAATGCAGAGTTTTCACTTTTAGATCTCTATTGTGGTTGTGGTGGAATGTCAACTGGATTGTGCCTTGGTGCCAAACTTTCTTCTGTTAACCTTGTCACGAAATGGGCCCTTGACAGTGATAAATCTGCCTGTGAAAGCTTAAAGTTGAATCATCCAGAAACACATGTCAGGAATGAAGCTGCCGAGGATTTTCTTGAACTATTGAAGGAATGGGAAAAGTTATGCAGACAGTATGAGGTCGATAATGTAGAGAGAACTAATCGATCTAGATCAGAGACCTCAAGAGTACCCAAGCACAATGATGAGACTGAATTTGAAGTTTCCAGGATTATTGATATCTGCTATGGTGACCCCAATAAGACAGGCAAGCGTGGAGTAAACTTTAGGGTGCGTTGGAAGGGTTATGGTAGCAGTGACGATACATGGGAACCAATTGGAGGCTTAAGTAACTGCAAAGAGAGTATACGAGATTTTGTAAAAAATGGGAAGAAGCTGAAGATCTTGCCACTTCCAGGGGATGCTGATGTAATTTGCGGGGGCCCACCTTGCCAAGGAATTAGTGGCTATAATCGCTTTAGAAATGTCGACTCTCCTTTGGATGATGAGAAAAATCGTCAAATTATAGTCTTCATGGATATAGTAAATCTGTTAAAGCCAAAGTATGTGTTGATGGAAAATGTAGCAGACATTCTGAGATTTGATAAGGCTTCTCTTGGAAGGTATGCGCTCAGTCGTTTGGTGCAGATGACTTACCAAGCAAGGCTAGGAATAATTGCTGCTGGTTGTTATGGCCTTCCACAATTTCGATTGCGTGTTTTCTTGTGGGGTGCTCATCCTTCTGAGAATCTACCCCAATTTCCTCGTCCCACACATGATGTTATTATTAGATACTGGCCTCCGCCAGAGTTTGAGCGCAATGTTGTTGCTTATGATGAAGACCAACCTCGTGAGCTAGAAAAAGCTCTTCTTCTTCAAGATGCCATCTCTGATCTTCCTGCTGTCAAACACAATGAAACAAGTGAAGAAATGTCGTTCAAAAACCCTCCTGAAACAGATTTCCAAAGATATATAAGATCAACACAATATGAGATGGTTGGATCTGCATTAGATGACACTAAGAAAAAGGAAAATTTGCTGTATGACCATCGATCTTACCCTTTACACGAAGATGATTATGCACGAGTTTGTCAGATTCCGAAAAGAAAGGGAGCAAATTTCCGGGACCTACCTGGTGTTGTTGTAGGAAGAGACAATGTGGCTCGGAGGGATTTGACTGAAAAGCAGTCAGTGTTGCCATCTGGAAAGCCATTGGTACCAGACTATGCCTTTACTTTTGAACAAGGGAAGTCTAAAAGACCATTTGCGAGGTTATGGTGGGATGAGACCGTGGCCACTGTATTGACATTCCCAAGTTGTCACAACCAGGTTGTATTACATCCTGAGCAGGACCGAATCCTCACTCTACGAGAATGTGCAAGATTGCAAGGCTTTCCTGATTATTATAGGTTCTGTGGCACGGTTAGAGAGAGATACTGTCAGGTTGGAAATGCAGTTGCAATTCCTGTCGCGCGAGCTTTAGGATATGCATTGGGATTGGCAGTTAACAAATCCAACGGGAATGAACCACTGCTGACTCTCCCCCAAAATTTTTCTCATTCAAACTATTTTCAATTCACAGAAATTTTGCCCCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

1131

Amino Acids

127.83

Weight (kDa)

8.44

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	416 - 523	9.6e-16	BAH domain
Chromo	PF00385	671 - 726	3.2e-10	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	730 - 1095	1.4e-35	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	3010
AccB1I	GGYRCC	3 cut(s)	178, 1766, 3010
AccI	GTMKAC	2 cut(s)	2161, 2283
AccII	CGCG	2 cut(s)	3266, 3268
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	4 cut(s)	119, 1120, 2232, 2597
AclWI	GGATC	6 cut(s)	430, 1073, 1310, 1600, 1613, 2803
AcoI	YGGCCR	4 cut(s)	69, 116, 189, 3087
AcsI	RAATTY	7 cut(s)	745, 757, 2009, 2827, 2911, 3343, 3378
AcuI	CTGAAG	2 cut(s)	1228, 2213
AcyI	GRCGYC	1 cut(s)	179
AfaI	GTAC	4 cut(s)	207, 1269, 1986, 3012
AfiI	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
AflII	CTTAAG	1 cut(s)	2140
AflIII	ACRYGT	1 cut(s)	1861
AhlI	ACTAGT	1 cut(s)	1061
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	8 cut(s)	14, 66, 290, 572, 2021, 2209, 2926, 3120
Alw21I	GWGCWC	4 cut(s)	35, 225, 338, 2530
AlwI	GGATC	6 cut(s)	430, 1073, 1310, 1600, 1613, 2803
AlwNI	CAGNNNCTG	1 cut(s)	602
Aor13HI	TCCGGA	1 cut(s)	27
ApaI	GGGCCC	2 cut(s)	1807, 2240
ApeKI	GCWGC	4 cut(s)	737, 740, 1877, 2474
ApoI	RAATTY	7 cut(s)	745, 757, 2009, 2827, 2911, 3343, 3378
Asp700I	GAANNNNTTC	1 cut(s)	1022
Asp718I	GGTACC	1 cut(s)	3010
AspA2I	CCTAGG	1 cut(s)	1493
AspLEI	GCGC	4 cut(s)	181, 2425, 2613, 3268
AspS9I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
AsuC2I	CCSGG	2 cut(s)	193, 2918
AsuHPI	GGTGA	3 cut(s)	603, 1482, 2057
AsuII	TTCGAA	1 cut(s)	1466
AvaII	GGWCC	2 cut(s)	2920, 3145
AvrII	CCTAGG	1 cut(s)	1493
BaeGI	GKGCMC	2 cut(s)	1807, 2240
BalI	TGGCCA	1 cut(s)	3089
BamHI	GGATCC	1 cut(s)	1605
BanI	GGYRCC	3 cut(s)	178, 1766, 3010
BanII	GRGCYC	4 cut(s)	35, 338, 1807, 2240
BarI	GAAGNNNNNNTAC	2 cut(s)	781, 813
BauI	CACGAG	2 cut(s)	2643, 2877
BbsI	GAAGAC	2 cut(s)	2317, 2640
Bbv12I	GWGCWC	4 cut(s)	35, 225, 338, 2530
BbvI	GCAGC	4 cut(s)	749, 752, 1864, 2461
BceAI	ACGGC	4 cut(s)	56, 131, 217, 391
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	8 cut(s)	16, 68, 292, 574, 2023, 2211, 2928, 3122
BcnI	CCSGG	2 cut(s)	193, 2918
BcuI	ACTAGT	1 cut(s)	1061
BfmI	CTRYAG	2 cut(s)	594, 1431
BfoI	RGCGCY	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	2140
BglII	AGATCT	5 cut(s)	140, 710, 1142, 1720, 2196
BisI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
BlnI	CCTAGG	1 cut(s)	1493
BlsI	GCNGC	5 cut(s)	120, 739, 742, 1879, 2476
Bme18I	GGWCC	2 cut(s)	2920, 3145
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
BmrI	ACTGGG	1 cut(s)	1677
BmsI	GCATC	5 cut(s)	589, 845, 1248, 2206, 2665
BmuI	ACTGGG	1 cut(s)	1677
BoxI	GACNNNNGTC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	2317, 2640
BplI	GAGNNNNNCTC	4 cut(s)	238, 270, 853, 885
Bpu10I	CCTNAGC	1 cut(s)	3138
Bpu14I	TTCGAA	1 cut(s)	1466
BpuEI	CTTGAG	3 cut(s)	880, 1203, 1963
BpuMI	CCSGG	2 cut(s)	193, 2918
Bsa29I	ATCGAT	2 cut(s)	1960, 2845
BsaBI	GATNNNNATC	1 cut(s)	1966
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	3 cut(s)	820, 1967, 3074
BsaWI	WCCGGW	3 cut(s)	27, 225, 776
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
Bse1I	ACTGG	3 cut(s)	1683, 1756, 2594
Bse3DI	GCAATG	3 cut(s)	257, 1518, 2620
Bse8I	GATNNNNATC	1 cut(s)	1966
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	8 cut(s)	16, 68, 292, 574, 2023, 2211, 2928, 3122
BseCI	ATCGAT	2 cut(s)	1960, 2845
BseGI	GGATG	7 cut(s)	439, 1849, 2221, 2302, 2530, 3082, 3133
BseJI	GATNNNNATC	1 cut(s)	1966
BseLI	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
BseMI	GCAATG	3 cut(s)	257, 1518, 2620
BseMII	CTCAG	8 cut(s)	224, 441, 930, 975, 2381, 2440, 2529, 3129
BseNI	ACTGG	3 cut(s)	1683, 1756, 2594
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	2 cut(s)	1807, 2240
BseX3I	CGGCCG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	749, 752, 1864, 2461
BsgI	GTGCAG	1 cut(s)	2459
Bsh1236I	CGCG	2 cut(s)	3266, 3268
Bsh1285I	CGRYCG	1 cut(s)	119
BshNI	GGYRCC	3 cut(s)	178, 1766, 3010
BshVI	ATCGAT	2 cut(s)	1960, 2845
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	4 cut(s)	35, 225, 338, 2530
BsiSI	CCGG	8 cut(s)	28, 164, 182, 192, 226, 369, 777, 2917
BsiWI	CGTACG	1 cut(s)	205
BslFI	GGGAC	3 cut(s)	1665, 2547, 2933
BslI	CCNNNNNNNGG	7 cut(s)	15, 27, 733, 1499, 2135, 2210, 2249
BsmFI	GGGAC	3 cut(s)	1665, 2547, 2933
BsmI	GAATGC	2 cut(s)	146, 1211
Bso31I	GGTCTC	3 cut(s)	820, 1967, 3074
Bsp119I	TTCGAA	1 cut(s)	1466
Bsp120I	GGGCCC	2 cut(s)	1803, 2236
Bsp1286I	GDGCHC	6 cut(s)	35, 225, 338, 1807, 2240, 2530
Bsp13I	TCCGGA	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	1267
BspACI	CCGC	4 cut(s)	119, 1120, 2232, 2597
BspCNI	CTCAG	8 cut(s)	225, 442, 931, 976, 2382, 2439, 2530, 3130
BspDI	ATCGAT	2 cut(s)	1960, 2845
BspEI	TCCGGA	1 cut(s)	27
BspFNI	CGCG	2 cut(s)	3266, 3268
BspHI	TCATGA	1 cut(s)	1402
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	6 cut(s)	430, 1073, 1310, 1600, 1613, 2803
BspQI	GCTCTTC	1 cut(s)	2667
BspT104I	TTCGAA	1 cut(s)	1466
BspT107I	GGYRCC	3 cut(s)	178, 1766, 3010
BspTI	CTTAAG	1 cut(s)	2140
BspTNI	GGTCTC	3 cut(s)	820, 1967, 3074
BsrDI	GCAATG	3 cut(s)	257, 1518, 2620
BsrGI	TGTACA	1 cut(s)	1267
BsrI	ACTGG	3 cut(s)	1683, 1756, 2594
BssNAI	GTATAC	1 cut(s)	2162
BssNI	GRCGYC	1 cut(s)	179
BssSI	CACGAG	2 cut(s)	2643, 2877
BssT1I	CCWWGG	4 cut(s)	1493, 1581, 1762, 2248
Bst1107I	GTATAC	1 cut(s)	2162
Bst2BI	CACGAG	2 cut(s)	2643, 2877
Bst2UI	CCWGG	8 cut(s)	16, 68, 292, 574, 2023, 2211, 2928, 3122
Bst6I	CTCTTC	3 cut(s)	1127, 2667, 2938
BstACI	GRCGYC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	2140
BstAUI	TGTACA	1 cut(s)	1267
BstBI	TTCGAA	1 cut(s)	1466
BstC8I	GCNNGC	5 cut(s)	100, 161, 338, 2066, 3270
BstDSI	CCRYGG	1 cut(s)	3084
BstEII	GGTNACC	1 cut(s)	2045
BstENI	CCTNNNNNAGG	2 cut(s)	1497, 2247
BstF5I	GGATG	7 cut(s)	439, 1849, 2221, 2302, 2530, 3082, 3133
BstFNI	CGCG	2 cut(s)	3266, 3268
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	4 cut(s)	181, 2425, 2613, 3268
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 2244, 2268
BstNI	CCWGG	8 cut(s)	16, 68, 292, 574, 2023, 2211, 2928, 3122
BstNSI	RCATGY	3 cut(s)	113, 968, 1865
BstPAI	GACNNNNGTC	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	2045
BstSFI	CTRYAG	2 cut(s)	594, 1431
BstSLI	GKGCMC	2 cut(s)	1807, 2240
BstUI	CGCG	2 cut(s)	3266, 3268
BstV1I	GCAGC	4 cut(s)	749, 752, 1864, 2461
BstV2I	GAAGAC	2 cut(s)	2317, 2640
BstX2I	RGATCY	8 cut(s)	140, 710, 1078, 1142, 1605, 1720, 2196, 2795
BstXI	CCANNNNNNTGG	2 cut(s)	67, 1669
BstYI	RGATCY	8 cut(s)	140, 710, 1078, 1142, 1605, 1720, 2196, 2795
BstZ17I	GTATAC	1 cut(s)	2162
BstZI	CGGCCG	1 cut(s)	116
Bsu15I	ATCGAT	2 cut(s)	1960, 2845
BsuTUI	ATCGAT	2 cut(s)	1960, 2845
BtgI	CCRYGG	1 cut(s)	3084
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	7 cut(s)	439, 1849, 2221, 2302, 2530, 3082, 3133
BtsI	GCAGTG	2 cut(s)	2116, 3323
BtsIMutI	CAGTG	7 cut(s)	1358, 1587, 1819, 2116, 2991, 3090, 3323
Cac8I	GCNNGC	5 cut(s)	100, 161, 338, 2066, 3270
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	1402
CfoI	GCGC	4 cut(s)	181, 2425, 2613, 3268
Cfr13I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
ClaI	ATCGAT	2 cut(s)	1960, 2845
CseI	GACGC	2 cut(s)	339, 1512
CsiI	ACCWGGT	2 cut(s)	2926, 3120
Csp6I	GTAC	4 cut(s)	206, 1268, 1985, 3011
CviQI	GTAC	4 cut(s)	206, 1268, 1985, 3011
DinI	GGCGCC	1 cut(s)	180
DraI	TTTAAA	1 cut(s)	837
EaeI	YGGCCR	4 cut(s)	69, 116, 189, 3087
EagI	CGGCCG	1 cut(s)	116
Eam1104I	CTCTTC	3 cut(s)	1127, 2667, 2938
EarI	CTCTTC	3 cut(s)	1127, 2667, 2938
EciI	GGCGGA	1 cut(s)	2586
Ecl136II	GAGCTC	2 cut(s)	33, 336
EclXI	CGGCCG	1 cut(s)	116
Eco130I	CCWWGG	4 cut(s)	1493, 1581, 1762, 2248
Eco24I	GRGCYC	4 cut(s)	35, 338, 1807, 2240
Eco31I	GGTCTC	3 cut(s)	820, 1967, 3074
Eco32I	GATATC	2 cut(s)	1488, 2035
Eco47I	GGWCC	2 cut(s)	2920, 3145
Eco52I	CGGCCG	1 cut(s)	116
Eco53kI	GAGCTC	2 cut(s)	33, 336
Eco57I	CTGAAG	2 cut(s)	1228, 2213
Eco91I	GGTNACC	1 cut(s)	2045
EcoICRI	GAGCTC	2 cut(s)	33, 336
EcoNI	CCTNNNNNAGG	2 cut(s)	1497, 2247
EcoO109I	RGGNCCY	4 cut(s)	157, 1804, 2236, 2920
EcoO65I	GGTNACC	1 cut(s)	2045
EcoRII	CCWGG	8 cut(s)	14, 66, 290, 572, 2021, 2209, 2926, 3120
EcoRV	GATATC	2 cut(s)	1488, 2035
EcoT14I	CCWWGG	4 cut(s)	1493, 1581, 1762, 2248
EcoT22I	ATGCAT	1 cut(s)	3286
EcoT38I	GRGCYC	4 cut(s)	35, 338, 1807, 2240
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
ErhI	CCWWGG	4 cut(s)	1493, 1581, 1762, 2248
FalI	AAGNNNNNCTT	2 cut(s)	2649, 2681
FaqI	GGGAC	3 cut(s)	1665, 2547, 2933
FauI	CCCGC	1 cut(s)	2225
FblI	GTMKAC	2 cut(s)	2161, 2283
Fnu4HI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
FokI	GGATG	7 cut(s)	446, 1836, 2228, 2309, 2517, 3089, 3120
FriOI	GRGCYC	4 cut(s)	35, 338, 1807, 2240
Fsp4HI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
GlaI	GCGC	4 cut(s)	180, 2424, 2612, 3267
GluI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	8 cut(s)	28, 164, 182, 192, 226, 369, 777, 2917
HgaI	GACGC	2 cut(s)	339, 1512
HhaI	GCGC	4 cut(s)	181, 2425, 2613, 3268
Hin1I	GRCGYC	1 cut(s)	179
Hin6I	GCGC	4 cut(s)	179, 2423, 2611, 3266
HinP1I	GCGC	4 cut(s)	179, 2423, 2611, 3266
HincII	GTYRAC	5 cut(s)	682, 1749, 1786, 2284, 3301
HindII	GTYRAC	5 cut(s)	682, 1749, 1786, 2284, 3301
HindIII	AAGCTT	1 cut(s)	1834
HpaI	GTTAAC	2 cut(s)	1786, 3301
HpaII	CCGG	8 cut(s)	28, 164, 182, 192, 226, 369, 777, 2917
HphI	GGTGA	3 cut(s)	603, 1482, 2057
Hpy166II	GTNNAC	9 cut(s)	459, 682, 1438, 1749, 1786, 2077, 2162, 2284, 3301
Hpy8I	GTNNAC	9 cut(s)	459, 682, 1438, 1749, 1786, 2077, 2162, 2284, 3301
Hpy99I	CGWCG	4 cut(s)	89, 107, 134, 1528
HpyCH4IV	ACGT	3 cut(s)	360, 1014, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 2244, 2268
HpySE526I	ACGT	3 cut(s)	360, 1014, 1200
Hsp92I	GRCGYC	1 cut(s)	179
HspAI	GCGC	4 cut(s)	179, 2423, 2611, 3266
KasI	GGCGCC	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	3014
KspAI	GTTAAC	2 cut(s)	1786, 3301
LguI	GCTCTTC	1 cut(s)	2667
LmnI	GCTCC	8 cut(s)	30, 30, 38, 166, 220, 228, 333, 2906
Lsp1109I	GCAGC	4 cut(s)	749, 752, 1864, 2461
LweI	GCATC	5 cut(s)	589, 845, 1248, 2206, 2665
MabI	ACCWGGT	2 cut(s)	2926, 3120
MaeII	ACGT	3 cut(s)	360, 1014, 1200
MaeIII	GTNAC	8 cut(s)	73, 1477, 1585, 1792, 2045, 2111, 2144, 3113
MfeI	CAATTG	5 cut(s)	322, 932, 1127, 1234, 2130
MflI	RGATCY	8 cut(s)	140, 710, 1078, 1142, 1605, 1720, 2196, 2795
MhlI	GDGCHC	6 cut(s)	35, 225, 338, 1807, 2240, 2530
MlsI	TGGCCA	1 cut(s)	3089
MluNI	TGGCCA	1 cut(s)	3089
Mly113I	GGCGCC	1 cut(s)	179
MlyI	GAGTC	5 cut(s)	65, 1144, 1652, 2279, 3325
MmeI	TCCRAC	5 cut(s)	1372, 2072, 2773, 3220, 3333
Mox20I	TGGCCA	1 cut(s)	3089
Mph1103I	ATGCAT	1 cut(s)	3286
MroI	TCCGGA	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	1022
MscI	TGGCCA	1 cut(s)	3089
MseI	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
MslI	CAYNNNNRTG	2 cut(s)	1998, 2865
Msp20I	TGGCCA	1 cut(s)	3089
MspA1I	CMGCKG	1 cut(s)	121
MspCI	CTTAAG	1 cut(s)	2140
MspI	CCGG	8 cut(s)	28, 164, 182, 192, 226, 369, 777, 2917
MunI	CAATTG	5 cut(s)	322, 932, 1127, 1234, 2130
Mva1269I	GAATGC	2 cut(s)	146, 1211
MvaI	CCWGG	8 cut(s)	16, 68, 292, 574, 2023, 2211, 2928, 3122
MvnI	CGCG	2 cut(s)	3266, 3268
MwoI	GCNNNNNNNGC	3 cut(s)	268, 2244, 2268
NarI	GGCGCC	1 cut(s)	179
NciI	CCSGG	2 cut(s)	193, 2918
NmeAIII	GCCGAG	2 cut(s)	270, 1906
NmuCI	GTSAC	6 cut(s)	73, 1585, 1792, 2045, 2111, 3113
NsiI	ATGCAT	1 cut(s)	3286
NspI	RCATGY	3 cut(s)	113, 968, 1865
NspV	TTCGAA	1 cut(s)	1466
PagI	TCATGA	1 cut(s)	1402
PciI	ACATGT	1 cut(s)	1861
PciSI	GCTCTTC	1 cut(s)	2667
PctI	GAATGC	2 cut(s)	146, 1211
PdmI	GAANNNNTTC	1 cut(s)	1022
Pfl23II	CGTACG	1 cut(s)	205
PfoI	TCCNGGA	2 cut(s)	2021, 2916
PkrI	GCNGC	5 cut(s)	120, 739, 742, 1879, 2476
PleI	GAGTC	5 cut(s)	64, 1143, 1651, 2279, 3325
PluTI	GGCGCC	1 cut(s)	182
PpsI	GAGTC	5 cut(s)	64, 1143, 1651, 2279, 3325
PpuMI	RGGWCCY	1 cut(s)	2920
PscI	ACATGT	1 cut(s)	1861
PshAI	GACNNNNGTC	1 cut(s)	349
Psp124BI	GAGCTC	2 cut(s)	35, 338
Psp5II	RGGWCCY	1 cut(s)	2920
Psp6I	CCWGG	8 cut(s)	14, 66, 290, 572, 2021, 2209, 2926, 3120
PspEI	GGTNACC	1 cut(s)	2045
PspGI	CCWGG	8 cut(s)	14, 66, 290, 572, 2021, 2209, 2926, 3120
PspLI	CGTACG	1 cut(s)	205
PspOMI	GGGCCC	2 cut(s)	1803, 2236
PspPI	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
PspPPI	RGGWCCY	1 cut(s)	2920
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	8 cut(s)	140, 710, 1078, 1142, 1605, 1720, 2196, 2795
RsaI	GTAC	4 cut(s)	207, 1269, 1986, 3012
RsaNI	GTAC	4 cut(s)	206, 1268, 1985, 3011
RseI	CAYNNNNRTG	2 cut(s)	1998, 2865
SacI	GAGCTC	2 cut(s)	35, 338
SalI	GTCGAC	1 cut(s)	2282
SapI	GCTCTTC	1 cut(s)	2667
SaqAI	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
SatI	GCNGC	5 cut(s)	119, 738, 741, 1878, 2475
Sau96I	GGNCC	9 cut(s)	18, 157, 576, 1803, 1804, 2236, 2237, 2920, 3145
SchI	GAGTC	5 cut(s)	65, 1144, 1652, 2279, 3325
SduI	GDGCHC	6 cut(s)	35, 225, 338, 1807, 2240, 2530
SexAI	ACCWGGT	2 cut(s)	2926, 3120
SfaNI	GCATC	5 cut(s)	589, 845, 1248, 2206, 2665
SfcI	CTRYAG	2 cut(s)	594, 1431
SfoI	GGCGCC	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	1466
SinI	GGWCC	2 cut(s)	2920, 3145
SmiMI	CAYNNNNRTG	2 cut(s)	1998, 2865
SmlI	CTYRAG	4 cut(s)	859, 1218, 1978, 2140
SmoI	CTYRAG	4 cut(s)	859, 1218, 1978, 2140
SpeI	ACTAGT	1 cut(s)	1061
SsiI	CCGC	4 cut(s)	119, 1120, 2232, 2597
SspDI	GGCGCC	1 cut(s)	178
SstI	GAGCTC	2 cut(s)	35, 338
StyI	CCWWGG	4 cut(s)	1493, 1581, 1762, 2248
TaiI	ACGT	3 cut(s)	363, 1017, 1203
TaqII	GACCGA	1 cut(s)	3162
TatI	WGTACW	1 cut(s)	1267
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
Tru9I	TTAA	8 cut(s)	836, 900, 1505, 1785, 1838, 2141, 2348, 3300
TscAI	CASTG	7 cut(s)	1358, 1594, 1819, 2116, 2991, 3097, 3330
TseFI	GTSAC	6 cut(s)	73, 1585, 1792, 2045, 2111, 3113
TseI	GCWGC	4 cut(s)	737, 740, 1877, 2474
Tsp45I	GTSAC	6 cut(s)	73, 1585, 1792, 2045, 2111, 3113
TspRI	CASTG	7 cut(s)	1358, 1594, 1819, 2116, 2991, 3097, 3330
Vha464I	CTTAAG	1 cut(s)	2140
VpaK11BI	GGWCC	2 cut(s)	2920, 3145
XagI	CCTNNNNNAGG	2 cut(s)	1497, 2247
XapI	RAATTY	7 cut(s)	745, 757, 2009, 2827, 2911, 3343, 3378
XbaI	TCTAGA	1 cut(s)	1964
XceI	RCATGY	3 cut(s)	113, 968, 1865
XcmI	CCANNNNNNNNNTGG	3 cut(s)	298, 808, 2255
XmaJI	CCTAGG	1 cut(s)	1493
XmiI	GTMKAC	2 cut(s)	2161, 2283
XmnI	GAANNNNTTC	1 cut(s)	1022
Zsp2I	ATGCAT	1 cut(s)	3286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.