Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277115.1

Orthogroup ID

OG0001625

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 780

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggagtctaccttgcaaactgccaagtctctggggaacagtcccagttgtgatacttacaatgcagagttttcacttttagatctctattgtggttgtggtggaatgtcaactggattgtgccttggtgccaaactttcttctgttaaccttgtcacgaaatgggcccttgacagtgataaatctgcctgtgaaagcttaaagttgaatcatccagaaacacatgtcaggaatgaagctgccgaggattttcttgaactattgaaggaatgggaaaagttatgcagacagtatgaggtcgataatgtagagagaactaatcgatctagatcagagacctcaagagtacccaagcacaatgatgagcatgagactgaatttgaagtttccaggattattgatatctgctatggtgaccccaataagacaggcaagcgtggagtaaactttagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

151

Amino Acids

17.01

Weight (kDa)

5.26

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80740 AT4G19020 AT4G19020
fragaria_vesca	FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610 FvH4_5g23610
malus_domestica	MD06G1022700.v1.1
prunus_persica	Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1 Prupe.5G024100_v2.0.a1
pyrus_communis	pycom06g01820 pycom06g01830 pycom06g01850 pycom06g01860
rosa_chinensis	RchiOBHm_Chr7g0212911
rosa_laevigata	RLG00000002855
rosa_multiflora	Rmu_co8277115.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246430
rosa_rugosa	Rorug07G0137700 Rorug07G0137800 Rorug07G0137900 Rorug07G0138000 Rorug07G0138100
rosa_samantha	Rh7AG269200 Rh7BG264800 Rh7CG288400 Rh7DG277400
rosa_wichuraiana	Rw7G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	1 cut(s)	348
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	208, 257, 265, 383
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	198, 239
AluI	AGCT	2 cut(s)	198, 239
Alw26I	GTCTC	3 cut(s)	33, 329, 365
AoxI	GGCC	1 cut(s)	165
ApaI	GGGCCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	165, 166
AsuHPI	GGTGA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	33, 329, 365
BfaI	CTAG	1 cut(s)	327
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	165, 166
BmiI	GGNNCC	2 cut(s)	130, 167
BmrFI	CCNGG	1 cut(s)	391
BmrI	ACTGGG	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	124, 243
Bse1I	ACTGG	2 cut(s)	45, 118
Bse8I	GATNNNNATC	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	391
BseCI	ATCGAT	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	124, 243
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	45, 118
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	33, 329, 365
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	329
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	82, 323, 329
BspANI	GGCC	1 cut(s)	167
BspDI	ATCGAT	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	130, 167
BspT107I	GGYRCC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	45, 118
BssECI	CCNNGG	2 cut(s)	124, 243
BssMI	GATC	3 cut(s)	82, 323, 329
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	41, 176, 291
BstC8I	GCNNGC	1 cut(s)	434
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	85, 326, 332
BstMAI	GTCTC	3 cut(s)	33, 329, 365
BstMBI	GATC	3 cut(s)	82, 323, 329
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	165, 166
ClaI	ATCGAT	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	2 cut(s)	224, 368
CviJI	RGCY	3 cut(s)	167, 198, 239
CviKI_1	RGCY	3 cut(s)	167, 198, 239
CviQI	GTAC	1 cut(s)	347
DpnI	GATC	3 cut(s)	84, 325, 331
DpnII	GATC	3 cut(s)	82, 323, 329
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	403
Eco91I	GGTNACC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	227, 371
FaiI	YATR	5 cut(s)	225, 283, 294, 369, 411
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	223, 367
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	227, 371
HincII	GTYRAC	2 cut(s)	111, 148
HindII	GTYRAC	2 cut(s)	111, 148
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	2 cut(s)	5, 208
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	4 cut(s)	9, 111, 148, 445
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	6 cut(s)	157, 215, 229, 254, 327, 342
Hpy8I	GTNNAC	4 cut(s)	9, 111, 148, 445
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	3 cut(s)	41, 176, 291
HpyCH4V	TGCA	3 cut(s)	16, 65, 285
Hsp92II	CATG	2 cut(s)	227, 371
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	82, 323, 329
LpnPI	CCDG	9 cut(s)	17, 58, 99, 202, 214, 228, 376, 403, 414
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	154, 413
MalI	GATC	3 cut(s)	84, 325, 331
MboI	GATC	3 cut(s)	82, 323, 329
MboII	GAAGA	1 cut(s)	132
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	238, 289, 349
MseI	TTAA	2 cut(s)	147, 200
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	82, 323, 329
NlaIII	CATG	2 cut(s)	227, 371
NlaIV	GGNNCC	2 cut(s)	130, 167
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	154, 413
NspI	RCATGY	1 cut(s)	227
PciI	ACATGT	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	130, 167
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	165, 166
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	147, 200
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	82, 323, 329
Sau96I	GGNCC	2 cut(s)	165, 166
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	6 cut(s)	14, 153, 200, 241, 300, 341
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	377
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	41, 176, 291
TaqI	TCGA	2 cut(s)	300, 322
TasI	AATT	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	147, 200
Tru9I	TTAA	2 cut(s)	147, 200
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	154, 413
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	2 cut(s)	154, 413
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	377
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.