FvH4_5g27870
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004859
Physical Location & Seq
Reverse (-)
19099412 .. 19101704
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27870.t3

Sequence Viewer

Length: 1023 bp
ATGGGTTCTCAACAACAATCCCAGATGAGGTGTAGTGACTCTAGTTATCGTCAAGATTTGAACTTTTTTCCATCTCAACTTTCTCTCTCAAACACCACCTTTGGAGTCGTGGCTAGTTCTGAAATGGGTGACGGTGTTCATGACAGAAAGAGAAAGAGCACCATGTCTCTGAATCTTGCTGGAGACGAATCTGATCATGAAGATGTTATACAGAACCCTGCTGCTGCTGGAAGCACTAAGCTTTGTGTTAGAGGTCATTGGAGGCCAGCTGAAGACTCCAAACTCAAACAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTAATTGCTGAGCACCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCACAGGCTCTATGGCAACAAATGGGCCATGATTGCAAGGCTCTTCCCAGGAAGGACTGATAATGCTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAGCACAGAGAGGAATCCAATGTTTTCAAGAGAAGGAAGCCCTCTTCTAATTCACTGCCTCAACATGATCATGATCAACAAGATGGGACTAAGAATAATGCCTCCAGTGATCGTTCAACAATCTCAATCAATACCAGCAATGATGAATCTGGGTCTGCAGCCTCTGCCTCAACATGTACTAATCTCTCCCTCACTCCCTCAAACAGGCCAGCGCTGCTTCCCAGCTTATTTAGCAACATCAAAAATCCATTTCAGCAACAGAAAATCTTTGGATCACAAATGGACTCTGGCAGGATCAAGGGCAATGGGAATGGTCAGTCATCAGATTCAAACTCTGAAGTTTCTGGAGAAGAATCGGTTCTTACCACCTATAGGACCAACAACAATAATGTTTCTTCCATGTCTGGAGAAGATCAAATTGAGAAGATGAGCCTGATCCCATTCATTGATTTCCTTGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

341

Amino Acids

37.8

Weight (kDa)

8.32

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 84 - 130 5.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 87 - 147 6.4e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 136 - 178 3.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 139 - 180 8.7e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 386, 407, 829, 851, 979
AcuI CTGAAG 2 cut(s) 291, 906
AfaI GTAC 1 cut(s) 727
AfeI AGCGCT 1 cut(s) 762
AfiI CCNNNNNNNGG 3 cut(s) 27, 753, 921
AflIII ACRYGT 1 cut(s) 722
AgsI TTSAA 4 cut(s) 61, 577, 666, 879
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 4 cut(s) 241, 269, 388, 774
AluI AGCT 4 cut(s) 241, 269, 388, 774
Alw21I GWGCWC 2 cut(s) 161, 339
Alw26I GTCTC 2 cut(s) 171, 177
AlwI GGATC 5 cut(s) 386, 407, 829, 851, 979
AlwNI CAGNNNCTG 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 762
AoxI GGCC 4 cut(s) 263, 297, 474, 755
ApeKI GCWGC 4 cut(s) 221, 224, 707, 763
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 4 cut(s) 298, 308, 474, 924
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 308, 924
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 2 cut(s) 161, 339
BbvI GCAGC 4 cut(s) 208, 211, 719, 750
BccI CCATC 3 cut(s) 79, 338, 626
BciT130I CCWGG 1 cut(s) 498
BclI TGATCA 3 cut(s) 193, 616, 622
BcoDI GTCTC 2 cut(s) 171, 177
BfaI CTAG 4 cut(s) 42, 114, 389, 546
BfmI CTRYAG 2 cut(s) 705, 919
BfoI RGCGCY 1 cut(s) 764
BisI GCNGC 4 cut(s) 222, 225, 708, 764
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 4 cut(s) 223, 226, 709, 765
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 2 cut(s) 308, 924
BmgT120I GGNCC 4 cut(s) 298, 308, 474, 924
BmrFI CCNGG 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 4 cut(s) 201, 637, 915, 975
Bpu1102I GCTNAGC 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 395, 496, 1003
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 753, 921
Bse1I ACTGG 3 cut(s) 301, 323, 654
Bse3DI GCAATG 2 cut(s) 694, 859
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 395, 496, 1003
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 3 cut(s) 27, 753, 921
BseMI GCAATG 2 cut(s) 694, 859
BseMII CTCAG 2 cut(s) 324, 362
BseNI ACTGG 3 cut(s) 301, 323, 654
BseXI GCAGC 4 cut(s) 208, 211, 719, 750
BseYI CCCAGC 1 cut(s) 770
BshFI GGCC 4 cut(s) 265, 299, 476, 757
BsiHKAI GWGCWC 2 cut(s) 161, 339
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 3 cut(s) 27, 753, 921
BsmAI GTCTC 2 cut(s) 171, 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 4 cut(s) 265, 299, 476, 757
Bsp1286I GDGCHC 2 cut(s) 161, 339
Bsp1720I GCTNAGC 1 cut(s) 333
BspANI GGCC 4 cut(s) 265, 299, 476, 757
BspCNI CTCAG 2 cut(s) 325, 363
BspHI TCATGA 3 cut(s) 139, 196, 619
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 5 cut(s) 386, 407, 829, 851, 979
BspQI GCTCTTC 1 cut(s) 497
BsrDI GCAATG 2 cut(s) 694, 859
BsrI ACTGG 3 cut(s) 301, 323, 654
BssECI CCNNGG 3 cut(s) 395, 496, 1003
BssT1I CCWWGG 2 cut(s) 395, 1003
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 3 cut(s) 426, 497, 598
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 2 cut(s) 267, 759
BstDEI CTNAG 4 cut(s) 237, 333, 371, 639
BstENI CCTNNNNNAGG 1 cut(s) 751
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstMAI GTCTC 2 cut(s) 171, 177
BstMWI GCNNNNNNNGC 4 cut(s) 482, 713, 763, 780
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 2 cut(s) 536, 726
BstSCI CCNGG 1 cut(s) 496
BstSFI CTRYAG 2 cut(s) 705, 919
BstV1I GCAGC 4 cut(s) 208, 211, 719, 750
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 4 cut(s) 265, 299, 476, 757
BtsI GCAGTG 1 cut(s) 602
BtsIMutI CAGTG 3 cut(s) 424, 602, 661
Cac8I GCNNGC 2 cut(s) 267, 759
CaiI CAGNNNCTG 1 cut(s) 713
CciI TCATGA 3 cut(s) 139, 196, 619
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 4 cut(s) 298, 308, 474, 924
Csp6I GTAC 1 cut(s) 726
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 4 cut(s) 237, 333, 371, 639
Eam1104I CTCTTC 3 cut(s) 426, 497, 598
EarI CTCTTC 3 cut(s) 426, 497, 598
Eco130I CCWWGG 2 cut(s) 395, 1003
Eco47I GGWCC 2 cut(s) 308, 924
Eco47III AGCGCT 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 291, 906
EcoNI CCTNNNNNAGG 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 395, 1003
ErhI CCWWGG 2 cut(s) 395, 1003
Esp3I CGTCTC 1 cut(s) 177
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 649
FbaI TGATCA 3 cut(s) 193, 616, 622
Fnu4HI GCNGC 4 cut(s) 222, 225, 708, 764
Fsp4HI GCNGC 4 cut(s) 222, 225, 708, 764
FspBI CTAG 4 cut(s) 42, 114, 389, 546
GlaI GCGC 1 cut(s) 762
GluI GCNGC 4 cut(s) 222, 225, 708, 764
GsaI CCCAGC 1 cut(s) 774
GsuI CTGGAG 4 cut(s) 201, 637, 915, 975
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 265, 299, 476, 757
HhaI GCGC 1 cut(s) 763
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 5 cut(s) 121, 171, 193, 874, 886
Hpy188III TCNNGA 8 cut(s) 53, 140, 197, 520, 577, 620, 894, 954
HpyAV CCTTC 3 cut(s) 402, 495, 576
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 366, 485, 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 482, 713, 763, 780
HpyF3I CTNAG 4 cut(s) 237, 333, 371, 639
HspAI GCGC 1 cut(s) 761
Ksp22I TGATCA 3 cut(s) 193, 616, 622
LguI GCTCTTC 1 cut(s) 497
Lsp1109I GCAGC 4 cut(s) 208, 211, 719, 750
MaeI CTAG 4 cut(s) 42, 114, 389, 546
MaeIII GTNAC 2 cut(s) 35, 128
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 161, 339
MluCI AATT 3 cut(s) 327, 598, 966
MlyI GAGTC 4 cut(s) 32, 114, 269, 827
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 3 cut(s) 326, 381, 1021
MslI CAYNNNNRTG 4 cut(s) 201, 342, 531, 618
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 482, 713, 763, 780
NmuCI GTSAC 2 cut(s) 35, 128
NspI RCATGY 2 cut(s) 536, 726
PagI TCATGA 3 cut(s) 139, 196, 619
PciI ACATGT 1 cut(s) 722
PciSI GCTCTTC 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 7 cut(s) 172, 188, 523, 563, 695, 875, 902
PkrI GCNGC 4 cut(s) 223, 226, 709, 765
PleI GAGTC 4 cut(s) 32, 113, 269, 827
PpsI GAGTC 4 cut(s) 32, 113, 269, 827
PscI ACATGT 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 770
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 4 cut(s) 298, 308, 474, 924
PstI CTGCAG 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
RseI CAYNNNNRTG 4 cut(s) 201, 342, 531, 618
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 3 cut(s) 326, 381, 1021
SatI GCNGC 4 cut(s) 222, 225, 708, 764
Sau96I GGNCC 4 cut(s) 298, 308, 474, 924
SchI GAGTC 4 cut(s) 32, 114, 269, 827
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 2 cut(s) 161, 339
SfcI CTRYAG 2 cut(s) 705, 919
SinI GGWCC 2 cut(s) 308, 924
SmiMI CAYNNNNRTG 4 cut(s) 201, 342, 531, 618
Sse9I AATT 3 cut(s) 327, 598, 966
SspMI CTAG 4 cut(s) 42, 114, 389, 546
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 2 cut(s) 395, 1003
TaaI ACNGT 1 cut(s) 134
TasI AATT 3 cut(s) 327, 598, 966
TatI WGTACW 1 cut(s) 725
TfiI GAWTC 7 cut(s) 172, 188, 523, 563, 695, 875, 902
Tru1I TTAA 3 cut(s) 326, 381, 1021
Tru9I TTAA 3 cut(s) 326, 381, 1021
TscAI CASTG 3 cut(s) 424, 609, 661
TseFI GTSAC 2 cut(s) 35, 128
TseI GCWGC 4 cut(s) 221, 224, 707, 763
Tsp45I GTSAC 2 cut(s) 35, 128
TspDTI ATGAA 4 cut(s) 128, 213, 708, 982
TspRI CASTG 3 cut(s) 424, 609, 661
VpaK11BI GGWCC 2 cut(s) 308, 924
XagI CCTNNNNNAGG 1 cut(s) 751
XceI RCATGY 2 cut(s) 536, 726
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 4 cut(s) 42, 114, 389, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.