pycom14g00900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0004859
Physical Location & Seq
Reverse (-)
616335 .. 617734
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g00900.1

Sequence Viewer

Length: 957 bp
ATGGGTTTTCAACATCTGAGGAGTGATTGTGATGGTTTCACCAGATACAAAGATTTGAACTTTTTGCCACCACCTCCTGTTTCTAATCAACTTTCTCTCTCAAACACCTTTGGTGGTTCTTCTACTTCTGCAATGGGGCTTGGGCCTTTCAGTCCCTCATCATCCCAGCAAACCAACAAACCATGGAGTTTTCAAGCTTTGGAAAATGGGGGACCAAAAAATATAAGCGATCATGGTGTGCTTTTTGGGGTCGATCTGAAAAGGCCCGTGCCTTTGAATTTGAATCTTGTTGGAGAGGAAGATGATGATGAAGATAGGAGCCCTGCTGGTGGGAGAACTAGTGCTAAGAGTTGTGCCAGAGGCCATTGGAGACCAGCTGAAGACTCAAAGCTCAAAGAACTTGTGGGACAATATGGTCCTCAAAACTGGAACATAATAGCTGAGAAACTTGATGGTAGATCAGGGAAGAGTTGCAGATTGAGGTGGTTCAACCAGCTAGATCCAAGGATCAACAAAAGGGCCTTCAGTGAGGATGAAGAAGAGAGGCTGTTGGTTGCCCACAGACTCTATGGCAACAAATGGGCAATGATTGCAAGGCTCTTCCCTGGAAGGACTGACAATGCTGTGAAGAACCATTGGCATGCGATCATGGCCAGAAGACACCGAGAGCAATCCAATGTTTTCAAGAGGAGAAAGCCCTCTTCTCCTCCACCTCCATCTCCTCCTGCACCTCCTCCTCATGTGGTTGCTAATTTCCCAAAAAATCCTTCCACCAGTACTGAATCAACCATCTCAATAAGCACCATCAATGATGACAGCACTCAGTCTGCCTCAACATGCACTGATCTCTCCCTCACTCCCTCAAACAAACCACCTCCCACCTTTTTCACCAAGTTCCATCATTTTCATCACCACCAAAACTTTGGATCACATATAGGTATGCTCATCATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

319

Amino Acids

35.45

Weight (kDa)

9.49

Isoelectric Point (pI)

66.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 1.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 123 - 183 4.6e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 172 - 214 7.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 175 - 223 1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
AclWI GGATC 3 cut(s) 494, 515, 934
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 2 cut(s) 399, 508
AfaI GTAC 1 cut(s) 778
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 7 cut(s) 11, 58, 194, 277, 283, 490, 685
AhlI ACTAGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 751, 783
AluBI AGCT 5 cut(s) 197, 377, 391, 440, 496
AluI AGCT 5 cut(s) 197, 377, 391, 440, 496
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 3 cut(s) 494, 515, 934
AoxI GGCC 5 cut(s) 143, 263, 361, 519, 651
ApoI RAATTY 1 cut(s) 277
AspS9I GGNCC 5 cut(s) 143, 212, 264, 416, 519
AsuHPI GGTGA 3 cut(s) 31, 880, 902
AvaII GGWCC 2 cut(s) 212, 416
BalI TGGCCA 1 cut(s) 653
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 387, 664
BccI CCATC 6 cut(s) 26, 446, 724, 797, 812, 906
BciT130I CCWGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 364
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 2 cut(s) 339, 497
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 1 cut(s) 606
Bme18I GGWCC 2 cut(s) 212, 416
BmgT120I GGNCC 5 cut(s) 143, 212, 264, 416, 519
BmiI GGNNCC 2 cut(s) 213, 320
BmrFI CCNGG 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 387, 664
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 3 cut(s) 182, 503, 604
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 431, 774
Bse3DI GCAATG 2 cut(s) 138, 591
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 182, 503, 604
BseGI GGATG 2 cut(s) 161, 538
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 2 cut(s) 138, 591
BseMII CTCAG 3 cut(s) 8, 432, 836
BseNI ACTGG 2 cut(s) 431, 774
BseRI GAGGAG 6 cut(s) 34, 696, 703, 711, 723, 726
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 711
BshFI GGCC 5 cut(s) 145, 265, 363, 521, 653
BslFI GGGAC 3 cut(s) 138, 225, 420
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 3 cut(s) 138, 225, 420
BsnI GGCC 5 cut(s) 145, 265, 363, 521, 653
Bso31I GGTCTC 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
Bsp19I CCATGG 1 cut(s) 182
BspANI GGCC 5 cut(s) 145, 265, 363, 521, 653
BspCNI CTCAG 3 cut(s) 9, 433, 835
BspLI GGNNCC 2 cut(s) 213, 320
BspPI GGATC 3 cut(s) 494, 515, 934
BspQI GCTCTTC 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 2 cut(s) 138, 591
BsrI ACTGG 2 cut(s) 431, 774
BssECI CCNNGG 3 cut(s) 182, 503, 604
BssMI GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
BssT1I CCWWGG 2 cut(s) 182, 503
Bst2UI CCWGG 1 cut(s) 606
Bst6I CTCTTC 4 cut(s) 461, 534, 605, 706
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 4 cut(s) 17, 345, 441, 822
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 161, 538
BstKTI GATC 8 cut(s) 232, 256, 461, 502, 510, 648, 847, 929
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
BstMWI GCNNNNNNNGC 2 cut(s) 590, 650
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 2 cut(s) 644, 840
BstSCI CCNGG 1 cut(s) 604
BstV2I GAAGAC 2 cut(s) 387, 664
BstX2I RGATCY 1 cut(s) 499
BstXI CCANNNNNNTGG 1 cut(s) 923
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 5 cut(s) 145, 265, 363, 521, 653
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 161, 538
BtsIMutI CAGTG 2 cut(s) 532, 840
Cac8I GCNNGC 1 cut(s) 642
Cfr13I GGNCC 5 cut(s) 143, 212, 264, 416, 519
Csp6I GTAC 1 cut(s) 777
CviAII CATG 6 cut(s) 183, 233, 641, 649, 740, 837
CviQI GTAC 1 cut(s) 777
DdeI CTNAG 4 cut(s) 17, 345, 441, 822
DpnI GATC 8 cut(s) 231, 255, 460, 501, 509, 647, 846, 928
DpnII GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 4 cut(s) 461, 534, 605, 706
EarI CTCTTC 4 cut(s) 461, 534, 605, 706
Eco130I CCWWGG 2 cut(s) 182, 503
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 212, 416
Eco57I CTGAAG 2 cut(s) 399, 508
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 182, 503
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 182, 503
FaeI CATG 6 cut(s) 186, 236, 644, 652, 743, 840
FaqI GGGAC 3 cut(s) 138, 225, 420
FatI CATG 6 cut(s) 182, 232, 640, 648, 739, 836
FokI GGATG 2 cut(s) 148, 545
FriOI GRGCYC 1 cut(s) 323
FspBI CTAG 2 cut(s) 339, 497
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 5 cut(s) 145, 265, 363, 521, 653
Hin1II CATG 6 cut(s) 186, 236, 644, 652, 743, 840
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 4 cut(s) 283, 383, 564, 782
HphI GGTGA 3 cut(s) 31, 880, 902
Hpy188I TCNGA 2 cut(s) 18, 258
Hpy188III TCNNGA 1 cut(s) 685
HpyAV CCTTC 3 cut(s) 532, 603, 777
HpyCH4V TGCA 5 cut(s) 131, 474, 593, 728, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 650
HpyF3I CTNAG 4 cut(s) 17, 345, 441, 822
Hsp92II CATG 6 cut(s) 186, 236, 644, 652, 743, 840
Kzo9I GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
LguI GCTCTTC 1 cut(s) 605
LmnI GCTCC 1 cut(s) 318
MaeI CTAG 2 cut(s) 339, 497
MalI GATC 8 cut(s) 231, 255, 460, 501, 509, 647, 846, 928
MboI GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 2 cut(s) 277, 751
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 2 cut(s) 377, 558
MmeI TCCRAC 1 cut(s) 271
Mox20I TGGCCA 1 cut(s) 653
MscI TGGCCA 1 cut(s) 653
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 590, 650
NcoI CCATGG 1 cut(s) 182
NdeII GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
NlaIII CATG 6 cut(s) 186, 236, 644, 652, 743, 840
NlaIV GGNNCC 2 cut(s) 213, 320
NspI RCATGY 2 cut(s) 644, 840
PaeI GCATGC 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 283, 782
PleI GAGTC 2 cut(s) 377, 558
PpsI GAGTC 2 cut(s) 377, 558
Psp6I CCWGG 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 213, 320
PspPI GGNCC 5 cut(s) 143, 212, 264, 416, 519
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 778
RsaNI GTAC 1 cut(s) 777
RseI CAYNNNNRTG 1 cut(s) 639
SapI GCTCTTC 1 cut(s) 605
Sau3AI GATC 8 cut(s) 229, 253, 458, 499, 507, 645, 844, 926
Sau96I GGNCC 5 cut(s) 143, 212, 264, 416, 519
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 2 cut(s) 377, 558
ScrFI CCNGG 1 cut(s) 606
SduI GDGCHC 1 cut(s) 323
SinI GGWCC 2 cut(s) 212, 416
SmiMI CAYNNNNRTG 1 cut(s) 639
SpeI ACTAGT 1 cut(s) 338
SphI GCATGC 1 cut(s) 644
Sse9I AATT 2 cut(s) 277, 751
SspMI CTAG 2 cut(s) 339, 497
StyD4I CCNGG 1 cut(s) 604
StyI CCWWGG 2 cut(s) 182, 503
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 277, 751
TatI WGTACW 1 cut(s) 776
TfiI GAWTC 2 cut(s) 283, 782
TscAI CASTG 2 cut(s) 532, 847
TspDTI ATGAA 3 cut(s) 324, 549, 896
TspRI CASTG 2 cut(s) 532, 847
VpaK11BI GGWCC 2 cut(s) 212, 416
XapI RAATTY 1 cut(s) 277
XceI RCATGY 2 cut(s) 644, 840
XcmI CCANNNNNNNNNTGG 2 cut(s) 566, 920
XspI CTAG 2 cut(s) 339, 497
ZrmI AGTACT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.