Rroxscaffold_3G00239850
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004859
Physical Location & Seq
Reverse (-)
30727823 .. 30729816
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239850.1

Sequence Viewer

Length: 1026 bp
ATGGGTCCTCAACAACATCACCAGATGAGGAGTGACTCTAGTTATTGTCCAGATTTGAACTTTTTTCCATCTCAACTGTGTCTCTCAAAAACCACCTTTGGAGTCGTGGCTTATTCGGAAATGGGTTATGGTGTTCATGACAGAAAGAGCGCCGTGTCTCTGAATCTTGTTGGAGATGAATCTGATCATGATGATGTTATACAGAGCGCTGCTGGCAAAACTAAACTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCCAAACTCCAAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAAAACCATTGGCATGTCATCATGGCTAGAATTTACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCTTCTAATTCTCAGGCTGTTATTATTCCTCAACATGATCATGATAATGGTCAAGAAGATGGGGTTAAGAACAATGCCTCTAGTGATCGTTCAACAATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATGTACTAATCTCTCCCTCACTCCCTCAAACAGACCACTTGTTCCCAGTTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAACCTTTGGATCACAAATGGTCGCAGGCGCTGGCAGGATCAAGGGCAATGAGAATGGTCGGTCATCAGACTCGAACTCAGAAACTTCAGGAGATGAATCAGTACTCACCACCTATAGGACCAACAGCAATAATGTTTCTTCCATGTCCAGAGAAGCTCAAAGTGACAAGATCAGCGTGATGCCCTTCATTGATTTCCTAGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

341

Amino Acids

37.97

Weight (kDa)

8.24

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 79 - 125 1.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 82 - 142 9.9e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 131 - 173 4.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 134 - 183 1.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 555
AclWI GGATC 4 cut(s) 371, 392, 826, 854
AcsI RAATTY 1 cut(s) 534
AcuI CTGAAG 2 cut(s) 276, 879
AfaI GTAC 2 cut(s) 730, 912
AfeI AGCGCT 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 924
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 3 cut(s) 58, 669, 781
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 3 cut(s) 254, 373, 965
AluI AGCT 3 cut(s) 254, 373, 965
Alw26I GTCTC 2 cut(s) 86, 162
AlwI GGATC 4 cut(s) 371, 392, 826, 854
AlwNI CAGNNNCTG 2 cut(s) 716, 839
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 4 cut(s) 238, 248, 282, 459
ApeKI GCWGC 2 cut(s) 209, 710
ApoI RAATTY 1 cut(s) 534
AspA2I CCTAGG 1 cut(s) 1006
AspLEI GCGC 3 cut(s) 152, 209, 839
AspS9I GGNCC 5 cut(s) 5, 283, 293, 459, 927
AsuHPI GGTGA 2 cut(s) 11, 907
AvaII GGWCC 3 cut(s) 5, 293, 927
AvrII CCTAGG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 196, 722
BccI CCATC 3 cut(s) 76, 323, 629
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 2 cut(s) 184, 613
BcoDI GTCTC 2 cut(s) 86, 162
BfaI CTAG 5 cut(s) 39, 374, 531, 657, 1007
BfmI CTRYAG 1 cut(s) 922
BfoI RGCGCY 3 cut(s) 153, 210, 840
BisI GCNGC 2 cut(s) 210, 711
BlnI CCTAGG 1 cut(s) 1006
BlpI GCTNAGC 2 cut(s) 318, 706
BlsI GCNGC 2 cut(s) 211, 712
BmcAI AGTACT 1 cut(s) 912
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 3 cut(s) 5, 293, 927
BmgT120I GGNCC 5 cut(s) 5, 283, 293, 459, 927
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 280, 765
BmsI GCATC 2 cut(s) 331, 978
BmuI ACTGGG 2 cut(s) 280, 765
BpiI GAAGAC 1 cut(s) 264
Bpu1102I GCTNAGC 2 cut(s) 318, 706
BsaJI CCNNGG 3 cut(s) 380, 481, 1006
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse1I ACTGG 4 cut(s) 286, 308, 687, 771
Bse3DI GCAATG 1 cut(s) 862
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 380, 481, 1006
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 5 cut(s) 309, 347, 602, 720, 900
BseNI ACTGG 4 cut(s) 286, 308, 687, 771
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 196, 722
BshFI GGCC 4 cut(s) 240, 250, 284, 461
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 2 cut(s) 86, 162
BsnI GGCC 4 cut(s) 240, 250, 284, 461
Bsp143I GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
Bsp1720I GCTNAGC 2 cut(s) 318, 706
BspANI GGCC 4 cut(s) 240, 250, 284, 461
BspCNI CTCAG 5 cut(s) 310, 348, 601, 719, 899
BspHI TCATGA 3 cut(s) 136, 187, 616
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 371, 392, 826, 854
BspQI GCTCTTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 4 cut(s) 286, 308, 687, 771
BssECI CCNNGG 3 cut(s) 380, 481, 1006
BssMI GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
BssT1I CCWWGG 2 cut(s) 380, 1006
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 411, 482, 583
BstAPI GCANNNNNTGC 1 cut(s) 716
BstC8I GCNNGC 4 cut(s) 214, 252, 835, 841
BstDEI CTNAG 5 cut(s) 318, 356, 588, 706, 886
BstH2I RGCGCY 3 cut(s) 153, 210, 840
BstHHI GCGC 3 cut(s) 152, 209, 839
BstKTI GATC 9 cut(s) 187, 338, 379, 387, 616, 664, 821, 849, 981
BstMAI GTCTC 2 cut(s) 86, 162
BstMBI GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
BstMWI GCNNNNNNNGC 3 cut(s) 213, 467, 716
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 2 cut(s) 521, 729
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 922
BstV1I GCAGC 2 cut(s) 196, 722
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 240, 250, 284, 461
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 4 cut(s) 214, 252, 835, 841
CaiI CAGNNNCTG 2 cut(s) 716, 839
CciI TCATGA 3 cut(s) 136, 187, 616
CfoI GCGC 3 cut(s) 152, 209, 839
Cfr13I GGNCC 5 cut(s) 5, 283, 293, 459, 927
Csp6I GTAC 2 cut(s) 729, 911
CviAII CATG 9 cut(s) 137, 188, 463, 518, 526, 611, 617, 726, 952
CviQI GTAC 2 cut(s) 729, 911
DdeI CTNAG 5 cut(s) 318, 356, 588, 706, 886
DpnI GATC 9 cut(s) 186, 337, 378, 386, 615, 663, 820, 848, 980
DpnII GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
Eam1104I CTCTTC 3 cut(s) 411, 482, 583
EarI CTCTTC 3 cut(s) 411, 482, 583
Eco130I CCWWGG 2 cut(s) 380, 1006
Eco47I GGWCC 3 cut(s) 5, 293, 927
Eco47III AGCGCT 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 276, 879
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 380, 1006
ErhI CCWWGG 2 cut(s) 380, 1006
FaeI CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 729, 955
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 9 cut(s) 136, 187, 462, 517, 525, 610, 616, 725, 951
FbaI TGATCA 2 cut(s) 184, 613
Fnu4HI GCNGC 2 cut(s) 210, 711
Fsp4HI GCNGC 2 cut(s) 210, 711
FspBI CTAG 5 cut(s) 39, 374, 531, 657, 1007
GlaI GCGC 3 cut(s) 151, 208, 838
GluI GCNGC 2 cut(s) 210, 711
HaeII RGCGCY 3 cut(s) 153, 210, 840
HaeIII GGCC 4 cut(s) 240, 250, 284, 461
HhaI GCGC 3 cut(s) 152, 209, 839
Hin1II CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 729, 955
Hin6I GCGC 3 cut(s) 150, 207, 837
HinP1I GCGC 3 cut(s) 150, 207, 837
HinfI GANTC 8 cut(s) 35, 102, 163, 179, 260, 698, 878, 905
HphI GGTGA 2 cut(s) 11, 907
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 5 cut(s) 118, 162, 184, 877, 889
Hpy188III TCNNGA 9 cut(s) 50, 137, 188, 326, 617, 629, 781, 897, 957
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 387, 480, 1003
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 467, 716
HpyF3I CTNAG 5 cut(s) 318, 356, 588, 706, 886
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 729, 955
HspAI GCGC 3 cut(s) 150, 207, 837
Ksp22I TGATCA 2 cut(s) 184, 613
Kzo9I GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
LguI GCTCTTC 1 cut(s) 482
Lsp1109I GCAGC 2 cut(s) 196, 722
LweI GCATC 2 cut(s) 331, 978
MaeI CTAG 5 cut(s) 39, 374, 531, 657, 1007
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 2 cut(s) 32, 971
MalI GATC 9 cut(s) 186, 337, 378, 386, 615, 663, 820, 848, 980
MboI GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
MboII GAAGA 9 cut(s) 269, 422, 425, 428, 469, 570, 579, 644, 939
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 534, 583
MlyI GAGTC 4 cut(s) 29, 111, 254, 872
MmeI TCCRAC 2 cut(s) 151, 576
MseI TTAA 3 cut(s) 366, 642, 1024
MslI CAYNNNNRTG 5 cut(s) 192, 327, 516, 615, 621
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 213, 467, 716
NdeII GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
NlaIII CATG 9 cut(s) 140, 191, 466, 521, 529, 614, 620, 729, 955
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 32, 971
NspI RCATGY 2 cut(s) 521, 729
PagI TCATGA 3 cut(s) 136, 187, 616
PciI ACATGT 1 cut(s) 725
PciSI GCTCTTC 1 cut(s) 482
PfeI GAWTC 4 cut(s) 163, 179, 698, 905
PkrI GCNGC 2 cut(s) 211, 712
PleI GAGTC 4 cut(s) 29, 110, 254, 872
PpsI GAGTC 4 cut(s) 29, 110, 254, 872
PpuMI RGGWCCY 1 cut(s) 5
PscI ACATGT 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 5 cut(s) 5, 283, 293, 459, 927
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 2 cut(s) 716, 839
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 730, 912
RsaNI GTAC 2 cut(s) 729, 911
RseI CAYNNNNRTG 5 cut(s) 192, 327, 516, 615, 621
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 3 cut(s) 366, 642, 1024
SatI GCNGC 2 cut(s) 210, 711
Sau3AI GATC 9 cut(s) 184, 335, 376, 384, 613, 661, 818, 846, 978
Sau96I GGNCC 5 cut(s) 5, 283, 293, 459, 927
ScaI AGTACT 1 cut(s) 912
SchI GAGTC 4 cut(s) 29, 111, 254, 872
ScrFI CCNGG 1 cut(s) 483
SetI ASST 8 cut(s) 98, 256, 362, 375, 558, 815, 923, 967
SfaNI GCATC 2 cut(s) 331, 978
SfcI CTRYAG 1 cut(s) 922
SinI GGWCC 3 cut(s) 5, 293, 927
SmiMI CAYNNNNRTG 5 cut(s) 192, 327, 516, 615, 621
Sse9I AATT 2 cut(s) 534, 583
SspMI CTAG 5 cut(s) 39, 374, 531, 657, 1007
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 380, 1006
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 881
TaqII GACCGA 1 cut(s) 858
TasI AATT 2 cut(s) 534, 583
TatI WGTACW 2 cut(s) 728, 910
TfiI GAWTC 4 cut(s) 163, 179, 698, 905
Tru1I TTAA 3 cut(s) 366, 642, 1024
Tru9I TTAA 3 cut(s) 366, 642, 1024
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 32, 971
TseI GCWGC 2 cut(s) 209, 710
Tsp45I GTSAC 2 cut(s) 32, 971
TspDTI ATGAA 5 cut(s) 125, 192, 711, 918, 985
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 3 cut(s) 5, 293, 927
XapI RAATTY 1 cut(s) 534
XceI RCATGY 2 cut(s) 521, 729
XmaJI CCTAGG 1 cut(s) 1006
XspI CTAG 5 cut(s) 39, 374, 531, 657, 1007
ZrmI AGTACT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.