Rh7DG327400
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004859
Physical Location & Seq
Forward (+)
39661277 .. 39662398
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG327400.1

Sequence Viewer

Length: 915 bp
ATGGGTTATGGTGTTCATGACAGAAAGAGCACCATGTATCTGAATCTTGTTGGAGATGAATCTGATCATGATGACGTTATACAGACCACCGCTGCTGGCGAAACTAAGCTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCTAAACTCAAAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAATGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCTTCTAATTCTCAGGCTGTTATTATTCCTCAACATGATCATGATCATGGTCATGGTCAAGAAGATGGGGCTAAGAACAATGCCTCCAGTGATCGTTCAACAATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACGTGTACTAATCTCTCCCTCACTCCCTCAAACACACCACTTCTTCCCAGTTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAACCTTTGGATCACAACTGGTTGCAGGCGCTGGCAGGATCAAGGGCAATGAGAATGGTCAGTTATCAGACTCGAACTCAGAAACTTCAGGAGATGAATCAGTACTCACCACCTATAGGACCAACAGCAATTATGTTTCTTCCATGTCCAGAGAAGCTCAAAGTGACAAGATCAGCGTGATGCCATTTATTGATTTCCTAGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

33.88

Weight (kDa)

7.24

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 40 - 86 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 43 - 103 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 92 - 134 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 95 - 143 2.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclI AACGTT 1 cut(s) 438
AclWI GGATC 4 cut(s) 254, 275, 715, 743
AcuI CTGAAG 2 cut(s) 159, 768
AfaI GTAC 2 cut(s) 619, 801
AfiI CCNNNNNNNGG 1 cut(s) 813
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 2 cut(s) 558, 670
AjnI CCWGG 1 cut(s) 364
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
AluBI AGCT 4 cut(s) 109, 137, 256, 854
AluI AGCT 4 cut(s) 109, 137, 256, 854
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 4 cut(s) 254, 275, 715, 743
AlwNI CAGNNNCTG 2 cut(s) 605, 728
AoxI GGCC 4 cut(s) 121, 131, 165, 342
ApeKI GCWGC 2 cut(s) 92, 599
AspA2I CCTAGG 1 cut(s) 895
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 4 cut(s) 166, 176, 342, 816
AsuHPI GGTGA 1 cut(s) 796
AvaII GGWCC 2 cut(s) 176, 816
AvrII CCTAGG 1 cut(s) 895
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 79, 611
BccI CCATC 2 cut(s) 206, 518
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 3 cut(s) 64, 496, 502
BfaI CTAG 3 cut(s) 257, 414, 896
BfmI CTRYAG 1 cut(s) 811
BfoI RGCGCY 1 cut(s) 729
BisI GCNGC 2 cut(s) 93, 600
BlnI CCTAGG 1 cut(s) 895
BlpI GCTNAGC 2 cut(s) 201, 595
BlsI GCNGC 2 cut(s) 94, 601
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 2 cut(s) 176, 816
BmgT120I GGNCC 4 cut(s) 166, 176, 342, 816
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 2 cut(s) 163, 654
BmsI GCATC 2 cut(s) 214, 867
BmuI ACTGGG 2 cut(s) 163, 654
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 529
Bpu1102I GCTNAGC 2 cut(s) 201, 595
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 263, 364, 895
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse1I ACTGG 6 cut(s) 169, 191, 546, 576, 660, 720
Bse3DI GCAATG 1 cut(s) 751
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 263, 364, 895
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 5 cut(s) 192, 230, 485, 609, 789
BseNI ACTGG 6 cut(s) 169, 191, 546, 576, 660, 720
BseXI GCAGC 2 cut(s) 79, 611
BshFI GGCC 4 cut(s) 123, 133, 167, 344
BsiHKAI GWGCWC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 813
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 4 cut(s) 123, 133, 167, 344
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1720I GCTNAGC 2 cut(s) 201, 595
BspACI CCGC 1 cut(s) 90
BspANI GGCC 4 cut(s) 123, 133, 167, 344
BspCNI CTCAG 5 cut(s) 193, 231, 484, 608, 788
BspHI TCATGA 3 cut(s) 16, 67, 499
BspPI GGATC 4 cut(s) 254, 275, 715, 743
BspQI GCTCTTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 6 cut(s) 169, 191, 546, 576, 660, 720
BssECI CCNNGG 3 cut(s) 263, 364, 895
BssT1I CCWWGG 2 cut(s) 263, 895
Bst2UI CCWGG 1 cut(s) 366
Bst6I CTCTTC 3 cut(s) 294, 365, 466
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 4 cut(s) 97, 135, 724, 730
BstDEI CTNAG 7 cut(s) 105, 201, 239, 471, 531, 595, 775
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 1 cut(s) 728
BstMWI GCNNNNNNNGC 3 cut(s) 350, 427, 605
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 811
BstV1I GCAGC 2 cut(s) 79, 611
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 4 cut(s) 123, 133, 167, 344
BtsIMutI CAGTG 2 cut(s) 292, 553
Cac8I GCNNGC 4 cut(s) 97, 135, 724, 730
CaiI CAGNNNCTG 2 cut(s) 605, 728
CciI TCATGA 3 cut(s) 16, 67, 499
CfoI GCGC 1 cut(s) 728
Cfr13I GGNCC 4 cut(s) 166, 176, 342, 816
Csp6I GTAC 2 cut(s) 618, 800
CviQI GTAC 2 cut(s) 618, 800
DdeI CTNAG 7 cut(s) 105, 201, 239, 471, 531, 595, 775
Eam1104I CTCTTC 3 cut(s) 294, 365, 466
EarI CTCTTC 3 cut(s) 294, 365, 466
Eco130I CCWWGG 2 cut(s) 263, 895
Eco47I GGWCC 2 cut(s) 176, 816
Eco57I CTGAAG 2 cut(s) 159, 768
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 263, 895
ErhI CCWWGG 2 cut(s) 263, 895
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FbaI TGATCA 3 cut(s) 64, 496, 502
Fnu4HI GCNGC 2 cut(s) 93, 600
Fsp4HI GCNGC 2 cut(s) 93, 600
FspBI CTAG 3 cut(s) 257, 414, 896
GlaI GCGC 1 cut(s) 727
GluI GCNGC 2 cut(s) 93, 600
GsuI CTGGAG 1 cut(s) 529
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 4 cut(s) 123, 133, 167, 344
HhaI GCGC 1 cut(s) 728
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 6 cut(s) 43, 59, 143, 587, 767, 794
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 2 cut(s) 442, 618
Hpy188I TCNGA 4 cut(s) 42, 64, 766, 778
Hpy188III TCNNGA 9 cut(s) 17, 68, 209, 388, 500, 518, 670, 786, 846
Hpy8I GTNNAC 2 cut(s) 442, 618
HpyAV CCTTC 2 cut(s) 270, 363
HpyCH4IV ACGT 3 cut(s) 75, 438, 614
HpyCH4V TGCA 3 cut(s) 234, 421, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 427, 605
HpyF3I CTNAG 7 cut(s) 105, 201, 239, 471, 531, 595, 775
HpySE526I ACGT 3 cut(s) 75, 438, 614
HspAI GCGC 1 cut(s) 726
Ksp22I TGATCA 3 cut(s) 64, 496, 502
LguI GCTCTTC 1 cut(s) 365
Lsp1109I GCAGC 2 cut(s) 79, 611
LweI GCATC 2 cut(s) 214, 867
MaeI CTAG 3 cut(s) 257, 414, 896
MaeII ACGT 3 cut(s) 75, 438, 614
MaeIII GTNAC 1 cut(s) 860
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 2 cut(s) 466, 826
MlyI GAGTC 2 cut(s) 137, 761
MmeI TCCRAC 2 cut(s) 31, 459
MseI TTAA 2 cut(s) 249, 913
MslI CAYNNNNRTG 5 cut(s) 210, 399, 498, 504, 510
MspA1I CMGCKG 2 cut(s) 92, 137
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 350, 427, 605
NmuCI GTSAC 1 cut(s) 860
NspI RCATGY 1 cut(s) 404
PagI TCATGA 3 cut(s) 16, 67, 499
PciSI GCTCTTC 1 cut(s) 365
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 4 cut(s) 43, 59, 587, 794
PkrI GCNGC 2 cut(s) 94, 601
PleI GAGTC 2 cut(s) 137, 761
PpsI GAGTC 2 cut(s) 137, 761
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 4 cut(s) 166, 176, 342, 816
PstNI CAGNNNCTG 2 cut(s) 605, 728
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 619, 801
RsaNI GTAC 2 cut(s) 618, 800
RseI CAYNNNNRTG 5 cut(s) 210, 399, 498, 504, 510
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 249, 913
SatI GCNGC 2 cut(s) 93, 600
Sau96I GGNCC 4 cut(s) 166, 176, 342, 816
ScaI AGTACT 1 cut(s) 801
SchI GAGTC 2 cut(s) 137, 761
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 2 cut(s) 214, 867
SfcI CTRYAG 1 cut(s) 811
SinI GGWCC 2 cut(s) 176, 816
SmiMI CAYNNNNRTG 5 cut(s) 210, 399, 498, 504, 510
Sse9I AATT 2 cut(s) 466, 826
SsiI CCGC 1 cut(s) 90
SspMI CTAG 3 cut(s) 257, 414, 896
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 2 cut(s) 263, 895
TaiI ACGT 3 cut(s) 78, 441, 617
TaqI TCGA 1 cut(s) 770
TasI AATT 2 cut(s) 466, 826
TatI WGTACW 2 cut(s) 617, 799
TfiI GAWTC 4 cut(s) 43, 59, 587, 794
Tru1I TTAA 2 cut(s) 249, 913
Tru9I TTAA 2 cut(s) 249, 913
TscAI CASTG 2 cut(s) 292, 553
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 2 cut(s) 92, 599
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 4 cut(s) 5, 72, 600, 807
TspRI CASTG 2 cut(s) 292, 553
VpaK11BI GGWCC 2 cut(s) 176, 816
XceI RCATGY 1 cut(s) 404
XmaJI CCTAGG 1 cut(s) 895
XspI CTAG 3 cut(s) 257, 414, 896
ZrmI AGTACT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.