Rorug07G0188100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004859
Physical Location & Seq
Forward (+)
15914156 .. 15917538
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0188100.1

Sequence Viewer

Length: 930 bp
ATGGCGTGGAACGCGTTCAAGCTCTGCACGGCGCTGCGAGCCCTCGGCTACATAATGGTCCTGATCGTTGTCGGCATAGTCGGCCTCACCTACTACGCCGTCGTTTTGCTCAATTACTTACCGGCGCTTCTCCGAGGAGGCGTCGACGCCCTTATTGCTTTCCCGCTCTTGATTTTGTTCCATTTTCTGTTGGTGATGCTGTTGTGGAGCTACTTTTATGTTGTTCTAACGGATCCTGGGGGTATTCCACCAAATTGGAGGCCTGAAATCGATGAGGAGGGAGGCCAGGGAGCCCCATTGGTGGAATCAGAATACAGTGGTGCAGGTCTAGTATCCAACCCTGTCATGGCTTTTGACCCAGCAAATCAAAAAGTACGTTTCTGTCGGAAGTGCAACCACTATAAACCACCTCGTTGTCATCATTGTTCTGTTTGTGGGAGGTGTATTTTGAAAATGGACCATCATTGTGTGTGGGTGGTCAACTGTATTGGAGCATTGAATTACAAGTACTTCCTTCTTTTCTTGTTTTACACATTTCTTGAGACAACTCTTGTCGCATTATCATTATTGAGATATTTCATGGCATTTTTTACCGATGAAGAGATATCTGGAACGCTGGGAACTGTTGCAGCCAGTTTTATCACATTCGTTTTGAATTTAGCATTTGCGTTGAGCGTTTTGGGCTTTATGCTCATGCACCTATCATTGGTGGCATCCAATACCACCACAATTGAGGCATATGAGAAGAAAAGTACTCCCAAATGGCATTATGACCTTGGTCGAAAGAAAAACTTTGAACAGGTGTTTGGGACGGATAAGTGGTATTGGTTCATTCCTGCATATTCAGAGGAGGATTTAAGACGGATACCAGCTCTTCAGGGGATTGATTACCCAACAAGGCCTGAGTTGCATGCACTCCAGCAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

309

Amino Acids

35.11

Weight (kDa)

7.09

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 124 - 249 3e-39 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 164
AclWI GGATC 2 cut(s) 227, 240
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 860
AcyI GRCGYC 2 cut(s) 141, 147
AfaI GTAC 3 cut(s) 375, 509, 754
AfiI CCNNNNNNNGG 3 cut(s) 301, 346, 706
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 5 cut(s) 19, 451, 499, 655, 797
AjnI CCWGG 2 cut(s) 235, 285
AjuI GAANNNNNNNTTGG 2 cut(s) 789, 821
AluBI AGCT 3 cut(s) 22, 210, 872
AluI AGCT 3 cut(s) 22, 210, 872
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 2 cut(s) 227, 240
AoxI GGCC 4 cut(s) 82, 260, 283, 899
ApeKI GCWGC 2 cut(s) 34, 629
ApoI RAATTY 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 34, 127
AspS9I GGNCC 2 cut(s) 58, 457
AsuHPI GGTGA 2 cut(s) 79, 205
AvaII GGWCC 2 cut(s) 58, 457
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 43, 295
BbvI GCAGC 2 cut(s) 21, 641
BccI CCATC 1 cut(s) 468
BceAI ACGGC 2 cut(s) 45, 83
BciT130I CCWGG 2 cut(s) 237, 287
BciVI GTATCC 2 cut(s) 343, 858
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 2 cut(s) 35, 128
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 2 cut(s) 343, 858
BisI GCNGC 2 cut(s) 35, 630
BlsI GCNGC 2 cut(s) 36, 631
BmcAI AGTACT 2 cut(s) 509, 754
Bme1390I CCNGG 2 cut(s) 237, 287
Bme18I GGWCC 2 cut(s) 58, 457
BmgT120I GGNCC 2 cut(s) 58, 457
BmiI GGNNCC 2 cut(s) 234, 292
BmrFI CCNGG 2 cut(s) 237, 287
BmsI GCATC 2 cut(s) 186, 722
BoxI GACNNNNGTC 1 cut(s) 777
BpmI CTGGAG 1 cut(s) 902
BpuEI CTTGAG 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 141, 147
BsaJI CCNNGG 5 cut(s) 43, 133, 236, 286, 775
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 346, 706
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 633
BseBI CCWGG 2 cut(s) 237, 287
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 5 cut(s) 43, 133, 236, 286, 775
BseGI GGATG 1 cut(s) 713
BseLI CCNNNNNNNGG 3 cut(s) 301, 346, 706
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 3 cut(s) 150, 290, 863
BseXI GCAGC 2 cut(s) 21, 641
BseYI CCCAGC 2 cut(s) 358, 616
BsgI GTGCAG 2 cut(s) 10, 342
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 4 cut(s) 84, 262, 285, 901
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 823
BslI CCNNNNNNNGG 3 cut(s) 301, 346, 706
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 823
BsnI GGCC 4 cut(s) 84, 262, 285, 901
Bsp1286I GDGCHC 2 cut(s) 43, 295
Bsp143I GATC 2 cut(s) 63, 232
BspACI CCGC 1 cut(s) 164
BspANI GGCC 4 cut(s) 84, 262, 285, 901
BspCNI CTCAG 1 cut(s) 895
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 234, 292
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 227, 240
BspQI GCTCTTC 1 cut(s) 879
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 633
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 5 cut(s) 43, 133, 236, 286, 775
BssMI GATC 2 cut(s) 63, 232
BssNI GRCGYC 2 cut(s) 141, 147
BssT1I CCWWGG 1 cut(s) 775
Bst2UI CCWGG 2 cut(s) 237, 287
Bst4CI ACNGT 3 cut(s) 317, 485, 625
Bst6I CTCTTC 2 cut(s) 594, 879
BstACI GRCGYC 2 cut(s) 141, 147
BstC8I GCNNGC 2 cut(s) 39, 912
BstDEI CTNAG 1 cut(s) 903
BstF5I GGATG 1 cut(s) 713
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 35, 128
BstHHI GCGC 2 cut(s) 34, 127
BstKTI GATC 2 cut(s) 66, 235
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 2 cut(s) 63, 232
BstMWI GCNNNNNNNGC 6 cut(s) 11, 38, 81, 155, 681, 907
BstNI CCWGG 2 cut(s) 237, 287
BstNSI RCATGY 1 cut(s) 914
BstPAI GACNNNNGTC 1 cut(s) 777
BstSCI CCNGG 2 cut(s) 235, 285
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 21, 641
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 270
BsuI GTATCC 2 cut(s) 343, 858
BsuRI GGCC 4 cut(s) 84, 262, 285, 901
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 1 cut(s) 713
BtsIMutI CAGTG 1 cut(s) 322
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 39, 912
CfoI GCGC 2 cut(s) 34, 127
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 58, 457
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 2 cut(s) 130, 155
Csp6I GTAC 3 cut(s) 374, 508, 753
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 4 cut(s) 346, 580, 694, 911
CviQI GTAC 3 cut(s) 374, 508, 753
DdeI CTNAG 1 cut(s) 903
DpnI GATC 2 cut(s) 65, 234
DpnII GATC 2 cut(s) 63, 232
Eam1104I CTCTTC 2 cut(s) 594, 879
EarI CTCTTC 2 cut(s) 594, 879
Eco130I CCWWGG 1 cut(s) 775
Eco147I AGGCCT 2 cut(s) 262, 901
Eco24I GRGCYC 2 cut(s) 43, 295
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 58, 457
Eco57I CTGAAG 1 cut(s) 860
EcoRII CCWGG 2 cut(s) 235, 285
EcoRV GATATC 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 775
EcoT38I GRGCYC 2 cut(s) 43, 295
ErhI CCWWGG 1 cut(s) 775
FaeI CATG 4 cut(s) 349, 583, 697, 914
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 1 cut(s) 823
FatI CATG 4 cut(s) 345, 579, 693, 910
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 1 cut(s) 739
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 35, 630
FokI GGATG 1 cut(s) 700
FriOI GRGCYC 2 cut(s) 43, 295
Fsp4HI GCNGC 2 cut(s) 35, 630
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 33, 126
GluI GCNGC 2 cut(s) 35, 630
GsaI CCCAGC 2 cut(s) 362, 620
GsuI CTGGAG 1 cut(s) 902
HaeII RGCGCY 2 cut(s) 35, 128
HaeIII GGCC 4 cut(s) 84, 262, 285, 901
HapII CCGG 1 cut(s) 122
HgaI GACGC 2 cut(s) 130, 155
HhaI GCGC 2 cut(s) 34, 127
Hin1I GRCGYC 2 cut(s) 141, 147
Hin1II CATG 4 cut(s) 349, 583, 697, 914
Hin6I GCGC 2 cut(s) 32, 125
HinP1I GCGC 2 cut(s) 32, 125
HincII GTYRAC 2 cut(s) 145, 481
HindII GTYRAC 2 cut(s) 145, 481
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 79, 205
Hpy166II GTNNAC 2 cut(s) 145, 481
Hpy188I TCNGA 4 cut(s) 134, 310, 387, 847
Hpy188III TCNNGA 4 cut(s) 61, 169, 539, 609
Hpy8I GTNNAC 2 cut(s) 145, 481
Hpy99I CGWCG 3 cut(s) 104, 146, 149
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 3 cut(s) 317, 485, 625
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 8 cut(s) 27, 323, 393, 629, 697, 839, 910, 914
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 38, 81, 155, 681, 907
HpyF3I CTNAG 1 cut(s) 903
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 2 cut(s) 141, 147
Hsp92II CATG 4 cut(s) 349, 583, 697, 914
HspAI GCGC 2 cut(s) 32, 125
Kzo9I GATC 2 cut(s) 63, 232
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 3 cut(s) 207, 290, 491
Lsp1109I GCAGC 2 cut(s) 21, 641
LweI GCATC 2 cut(s) 186, 722
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 376
MalI GATC 2 cut(s) 65, 234
MbiI CCGCTC 1 cut(s) 166
MboI GATC 2 cut(s) 63, 232
MboII GAAGA 3 cut(s) 611, 757, 866
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 43, 295
MluCI AATT 5 cut(s) 112, 253, 499, 655, 729
MluI ACGCGT 1 cut(s) 12
MmeI TCCRAC 2 cut(s) 360, 365
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 857
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 237, 287
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 2 cut(s) 237, 287
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 6 cut(s) 11, 38, 81, 155, 681, 907
NdeI CATATG 1 cut(s) 739
NdeII GATC 2 cut(s) 63, 232
NlaIII CATG 4 cut(s) 349, 583, 697, 914
NlaIV GGNNCC 2 cut(s) 234, 292
NmeAIII GCCGAG 1 cut(s) 24
NspI RCATGY 1 cut(s) 914
PaeI GCATGC 1 cut(s) 914
PceI AGGCCT 2 cut(s) 262, 901
PciSI GCTCTTC 1 cut(s) 879
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 36, 631
PshAI GACNNNNGTC 1 cut(s) 777
PsiI TTATAA 1 cut(s) 928
Psp6I CCWGG 2 cut(s) 235, 285
PspFI CCCAGC 2 cut(s) 358, 616
PspGI CCWGG 2 cut(s) 235, 285
PspN4I GGNNCC 2 cut(s) 234, 292
PspPI GGNCC 2 cut(s) 58, 457
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 3 cut(s) 375, 509, 754
RsaNI GTAC 3 cut(s) 374, 508, 753
RseI CAYNNNNRTG 1 cut(s) 465
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 1 cut(s) 857
SatI GCNGC 2 cut(s) 35, 630
Sau3AI GATC 2 cut(s) 63, 232
Sau96I GGNCC 2 cut(s) 58, 457
ScaI AGTACT 2 cut(s) 509, 754
ScrFI CCNGG 2 cut(s) 237, 287
SduI GDGCHC 2 cut(s) 43, 295
SfaNI GCATC 2 cut(s) 186, 722
SgrDI CGTCGACG 1 cut(s) 143
SinI GGWCC 2 cut(s) 58, 457
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SphI GCATGC 1 cut(s) 914
Sse9I AATT 5 cut(s) 112, 253, 499, 655, 729
SseBI AGGCCT 2 cut(s) 262, 901
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 2 cut(s) 262, 901
StyD4I CCNGG 2 cut(s) 235, 285
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 317, 485, 625
TaiI ACGT 1 cut(s) 379
TaqI TCGA 3 cut(s) 144, 270, 781
TasI AATT 5 cut(s) 112, 253, 499, 655, 729
TatI WGTACW 2 cut(s) 507, 752
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 1 cut(s) 322
TseI GCWGC 2 cut(s) 34, 629
TspDTI ATGAA 3 cut(s) 568, 612, 820
TspGWI ACGGA 3 cut(s) 245, 827, 877
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 58, 457
XapI RAATTY 1 cut(s) 655
XceI RCATGY 1 cut(s) 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 329
ZrmI AGTACT 2 cut(s) 509, 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.