RLG00000002266
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004859
Physical Location & Seq
Reverse (-)
30915688 .. 30916793
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002266

Sequence Viewer

Length: 906 bp
ATGGGGTATGGTGTTCATGACAGAAAGAGCGCCTTGTCTCTGAATCTTGTTGGAGATGAATCTGATCATGATGATGTTATACAGAGCGCTGCTGGCAAAACTAAACTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCTAAACTCAAAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAATGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCTTCTAATTCTCAGGCTGTTATTATTCCTCAACATGATCATGATCATGGTCAAGAAGATGGGGCTAAGAACAATGCCTCTAGTGATCGTTCAACAATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAGCATGTACTAATCTCTCCCTCACTCCCTCAAACAGACCACTTCTTCCCAGTTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAACCTTTGGATCACAAATGGTTGCCGGCGCTGGCAGGATCAAGGGCAATGAGAATGGTCAGTCATCAGACTCGAACTCAGAAACTTCAGGAGATGAATCAGTGCTCACCACCTATAGGACCAACAGCAATAATGTTTCTTCCGTGTCCAGAGAAGCTCAAACTGACAAGATCAGCGTGATGCCATTCATTGATTTCCTTGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

302

Amino Acids

33.39

Weight (kDa)

8.73

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 39 - 85 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 42 - 102 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 91 - 133 3.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 94 - 142 2.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 435
AclWI GGATC 4 cut(s) 251, 272, 706, 734
AcuI CTGAAG 2 cut(s) 156, 759
AfaI GTAC 1 cut(s) 610
AfeI AGCGCT 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 804
AgsI TTSAA 2 cut(s) 549, 661
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 134, 253, 845
AluI AGCT 3 cut(s) 134, 253, 845
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 4 cut(s) 251, 272, 706, 734
AlwNI CAGNNNCTG 1 cut(s) 596
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 4 cut(s) 118, 128, 162, 339
ApeKI GCWGC 2 cut(s) 89, 590
AspLEI GCGC 3 cut(s) 32, 89, 719
AspS9I GGNCC 4 cut(s) 163, 173, 339, 807
AsuHPI GGTGA 1 cut(s) 787
AvaII GGWCC 2 cut(s) 173, 807
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 795
BbvCI CCTCAGC 1 cut(s) 601
BbvI GCAGC 2 cut(s) 76, 602
BccI CCATC 2 cut(s) 203, 509
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 3 cut(s) 64, 493, 499
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 3 cut(s) 254, 411, 537
BfmI CTRYAG 1 cut(s) 802
BfoI RGCGCY 3 cut(s) 33, 90, 720
BisI GCNGC 2 cut(s) 90, 591
BlpI GCTNAGC 2 cut(s) 198, 586
BlsI GCNGC 2 cut(s) 91, 592
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 173, 807
BmgT120I GGNCC 4 cut(s) 163, 173, 339, 807
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 2 cut(s) 160, 645
BmsI GCATC 2 cut(s) 211, 858
BmuI ACTGGG 2 cut(s) 160, 645
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 601
Bpu1102I GCTNAGC 2 cut(s) 198, 586
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 260, 361, 886
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 4 cut(s) 166, 188, 567, 651
Bse3DI GCAATG 1 cut(s) 742
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 260, 361, 886
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 6 cut(s) 189, 227, 482, 600, 615, 780
BseNI ACTGG 4 cut(s) 166, 188, 567, 651
BseXI GCAGC 2 cut(s) 76, 602
BshFI GGCC 4 cut(s) 120, 130, 164, 341
BsiHKAI GWGCWC 1 cut(s) 795
BsiSI CCGG 1 cut(s) 714
BslI CCNNNNNNNGG 1 cut(s) 804
BsmAI GTCTC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 4 cut(s) 120, 130, 164, 341
Bsp1286I GDGCHC 1 cut(s) 795
Bsp1720I GCTNAGC 2 cut(s) 198, 586
BspANI GGCC 4 cut(s) 120, 130, 164, 341
BspCNI CTCAG 6 cut(s) 190, 228, 481, 599, 614, 779
BspHI TCATGA 3 cut(s) 16, 67, 496
BspPI GGATC 4 cut(s) 251, 272, 706, 734
BspQI GCTCTTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 713
BsrI ACTGG 4 cut(s) 166, 188, 567, 651
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 3 cut(s) 260, 361, 886
BssT1I CCWWGG 2 cut(s) 260, 886
Bst2UI CCWGG 1 cut(s) 363
Bst6I CTCTTC 3 cut(s) 291, 362, 463
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 4 cut(s) 94, 132, 715, 721
BstDEI CTNAG 7 cut(s) 198, 236, 468, 522, 586, 601, 766
BstH2I RGCGCY 3 cut(s) 33, 90, 720
BstHHI GCGC 3 cut(s) 32, 89, 719
BstMAI GTCTC 1 cut(s) 42
BstMWI GCNNNNNNNGC 4 cut(s) 93, 347, 424, 596
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 2 cut(s) 401, 609
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 802
BstV1I GCAGC 2 cut(s) 76, 602
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 4 cut(s) 120, 130, 164, 341
BtsIMutI CAGTG 2 cut(s) 289, 795
Cac8I GCNNGC 4 cut(s) 94, 132, 715, 721
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 3 cut(s) 16, 67, 496
CfoI GCGC 3 cut(s) 32, 89, 719
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 4 cut(s) 163, 173, 339, 807
Csp6I GTAC 1 cut(s) 609
CviAII CATG 9 cut(s) 17, 68, 343, 398, 406, 491, 497, 503, 606
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 7 cut(s) 198, 236, 468, 522, 586, 601, 766
Eam1104I CTCTTC 3 cut(s) 291, 362, 463
EarI CTCTTC 3 cut(s) 291, 362, 463
Eco130I CCWWGG 2 cut(s) 260, 886
Eco47I GGWCC 2 cut(s) 173, 807
Eco47III AGCGCT 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 156, 759
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 260, 886
ErhI CCWWGG 2 cut(s) 260, 886
FaeI CATG 9 cut(s) 20, 71, 346, 401, 409, 494, 500, 506, 609
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 288, 320
FatI CATG 9 cut(s) 16, 67, 342, 397, 405, 490, 496, 502, 605
FbaI TGATCA 3 cut(s) 64, 493, 499
Fnu4HI GCNGC 2 cut(s) 90, 591
Fsp4HI GCNGC 2 cut(s) 90, 591
FspBI CTAG 3 cut(s) 254, 411, 537
GlaI GCGC 3 cut(s) 31, 88, 718
GluI GCNGC 2 cut(s) 90, 591
HaeII RGCGCY 3 cut(s) 33, 90, 720
HaeIII GGCC 4 cut(s) 120, 130, 164, 341
HapII CCGG 1 cut(s) 714
HhaI GCGC 3 cut(s) 32, 89, 719
Hin1II CATG 9 cut(s) 20, 71, 346, 401, 409, 494, 500, 506, 609
Hin6I GCGC 3 cut(s) 30, 87, 717
HinP1I GCGC 3 cut(s) 30, 87, 717
HinfI GANTC 6 cut(s) 43, 59, 140, 578, 758, 785
HpaII CCGG 1 cut(s) 714
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 42, 64, 757, 769
Hpy188III TCNNGA 9 cut(s) 17, 68, 206, 385, 497, 509, 661, 777, 837
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 267, 360
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 231, 418
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 347, 424, 596
HpyF3I CTNAG 7 cut(s) 198, 236, 468, 522, 586, 601, 766
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 9 cut(s) 20, 71, 346, 401, 409, 494, 500, 506, 609
HspAI GCGC 3 cut(s) 30, 87, 717
KroI GCCGGC 1 cut(s) 713
KroNI GCCGGC 1 cut(s) 715
Ksp22I TGATCA 3 cut(s) 64, 493, 499
LguI GCTCTTC 1 cut(s) 362
Lsp1109I GCAGC 2 cut(s) 76, 602
LweI GCATC 2 cut(s) 211, 858
MaeI CTAG 3 cut(s) 254, 411, 537
MaeII ACGT 1 cut(s) 435
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 1 cut(s) 463
MlyI GAGTC 2 cut(s) 134, 752
MmeI TCCRAC 2 cut(s) 31, 456
MroNI GCCGGC 1 cut(s) 713
MseI TTAA 2 cut(s) 246, 904
MslI CAYNNNNRTG 5 cut(s) 72, 207, 396, 495, 501
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 714
MspR9I CCNGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 93, 347, 424, 596
NaeI GCCGGC 1 cut(s) 715
NgoMIV GCCGGC 1 cut(s) 713
NlaIII CATG 9 cut(s) 20, 71, 346, 401, 409, 494, 500, 506, 609
NspI RCATGY 2 cut(s) 401, 609
PagI TCATGA 3 cut(s) 16, 67, 496
PciSI GCTCTTC 1 cut(s) 362
PctI GAATGC 1 cut(s) 420
PdiI GCCGGC 1 cut(s) 715
PfeI GAWTC 4 cut(s) 43, 59, 578, 785
PkrI GCNGC 2 cut(s) 91, 592
PleI GAGTC 2 cut(s) 134, 752
PpsI GAGTC 2 cut(s) 134, 752
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 4 cut(s) 163, 173, 339, 807
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
RseI CAYNNNNRTG 5 cut(s) 72, 207, 396, 495, 501
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 246, 904
SatI GCNGC 2 cut(s) 90, 591
Sau96I GGNCC 4 cut(s) 163, 173, 339, 807
SchI GAGTC 2 cut(s) 134, 752
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 795
SetI ASST 7 cut(s) 136, 242, 255, 438, 695, 803, 847
SfaNI GCATC 2 cut(s) 211, 858
SfcI CTRYAG 1 cut(s) 802
SinI GGWCC 2 cut(s) 173, 807
SmiMI CAYNNNNRTG 5 cut(s) 72, 207, 396, 495, 501
Sse9I AATT 1 cut(s) 463
SspMI CTAG 3 cut(s) 254, 411, 537
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 2 cut(s) 260, 886
TaiI ACGT 1 cut(s) 438
TaqI TCGA 1 cut(s) 761
TasI AATT 1 cut(s) 463
TatI WGTACW 1 cut(s) 608
TfiI GAWTC 4 cut(s) 43, 59, 578, 785
Tru1I TTAA 2 cut(s) 246, 904
Tru9I TTAA 2 cut(s) 246, 904
TscAI CASTG 2 cut(s) 289, 795
TseI GCWGC 2 cut(s) 89, 590
TspDTI ATGAA 5 cut(s) 5, 72, 591, 798, 865
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 2 cut(s) 289, 795
VpaK11BI GGWCC 2 cut(s) 173, 807
XceI RCATGY 2 cut(s) 401, 609
XspI CTAG 3 cut(s) 254, 411, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.