pycom12g01020
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0004859
Physical Location & Seq
Reverse (-)
890801 .. 891693
893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01020.1

Sequence Viewer

Length: 624 bp
ATGATTGCAAGGCTTTTCCCTGGAAGGACTGACAATGCTGTGAAGAACCATTGGCATGTGATCATGGCCAGAAGCCGCAGAGAGCAATCCCATGTTTTCAAGAGGAGAAAGCCCTCTTCTCCTCCACCTCCTTCTCCTCTTCCTCATGTGGTTGCTAATTTCCCGAAGAATCCTTCCACCAGTACTGAATCAACCGTCTCAATAAGCACCATCAATGATGACAGCACTCAGTCTGCCTCAACATGCACTAATCTCTCCCTCACTCCCTCAAACAAACCACCTCCCACCTTTTTCTCCAAGTTCCATCCTTTTCATCGCCCCCAAATCATTGGATCACCTATAGGCTCATCATCATCAAGTGATGGGGGATTTAACAAGATGATTGGTAGCAATGGTAATGGTTTCTGCGAGAGCACTGGGCCAGTGAGAGGAGTTGGAGCAGCAGCTGCAGCTATGAAGGGTGTGGATAATTCTGGTCATCAATCAGATTCAGAAATTTCTGGGGACGAGTCAGTCACCACCACTAGTACCCATCGGTCATTATCTGGGGAAGATCAAGATCTGCATCATGAAAAGACCACCACCATCCATTTCATTGATTTCCTTGGAGTAGGCACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

208

Amino Acids

22.06

Weight (kDa)

8.67

Isoelectric Point (pI)

62.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 495
AfaI GTAC 2 cut(s) 184, 529
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 2 cut(s) 446, 452
AluI AGCT 2 cut(s) 446, 452
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 2 cut(s) 66, 419
ApeKI GCWGC 4 cut(s) 440, 443, 446, 449
ApoI RAATTY 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 327, 508
BalI TGGCCA 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 416
BbvI GCAGC 4 cut(s) 433, 452, 455, 461
BccI CCATC 5 cut(s) 218, 312, 356, 540, 593
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 202
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 2 cut(s) 339, 447
BglII AGATCT 1 cut(s) 559
BisI GCNGC 5 cut(s) 76, 441, 444, 447, 450
BlsI GCNGC 5 cut(s) 77, 442, 445, 448, 451
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 21
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 426
BsaBI GATNNNNATC 2 cut(s) 558, 564
BsaJI CCNNGG 2 cut(s) 19, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 180, 421, 422
Bse3DI GCAATG 1 cut(s) 397
Bse8I GATNNNNATC 2 cut(s) 558, 564
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 19, 604
BseGI GGATG 2 cut(s) 304, 585
BseJI GATNNNNATC 2 cut(s) 558, 564
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 3 cut(s) 180, 421, 422
BseRI GAGGAG 4 cut(s) 111, 118, 126, 444
BseXI GCAGC 4 cut(s) 433, 452, 455, 461
BshFI GGCC 2 cut(s) 68, 421
BsiHKAI GWGCWC 1 cut(s) 416
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 202
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 2 cut(s) 68, 421
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 4 cut(s) 60, 332, 553, 559
BspACI CCGC 1 cut(s) 76
BspANI GGCC 2 cut(s) 68, 421
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 568
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 3 cut(s) 180, 421, 422
BssECI CCNNGG 2 cut(s) 19, 604
BssMI GATC 4 cut(s) 60, 332, 553, 559
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 121, 144
BstAPI GCANNNNNTGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 304, 585
BstKTI GATC 4 cut(s) 63, 335, 556, 562
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 60, 332, 553, 559
BstMWI GCNNNNNNNGC 2 cut(s) 446, 449
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 2 cut(s) 59, 246
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 2 cut(s) 339, 447
BstV1I GCAGC 4 cut(s) 433, 452, 455, 461
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 2 cut(s) 68, 421
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 304, 585
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 3 cut(s) 414, 429, 615
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 568
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 183, 528
CviAII CATG 6 cut(s) 56, 64, 92, 146, 243, 569
CviJI RGCY 8 cut(s) 13, 68, 75, 112, 345, 421, 446, 452
CviKI_1 RGCY 8 cut(s) 13, 68, 75, 112, 345, 421, 446, 452
CviQI GTAC 2 cut(s) 183, 528
DdeI CTNAG 1 cut(s) 228
DpnI GATC 4 cut(s) 62, 334, 555, 561
DpnII GATC 4 cut(s) 60, 332, 553, 559
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 121, 144
EarI CTCTTC 2 cut(s) 121, 144
Eco130I CCWWGG 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 6 cut(s) 59, 67, 95, 149, 246, 572
FaiI YATR 8 cut(s) 57, 65, 93, 147, 244, 341, 455, 570
FaqI GGGAC 1 cut(s) 518
FatI CATG 6 cut(s) 55, 63, 91, 145, 242, 568
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 5 cut(s) 76, 441, 444, 447, 450
FokI GGATG 2 cut(s) 291, 572
Fsp4HI GCNGC 5 cut(s) 76, 441, 444, 447, 450
FspBI CTAG 1 cut(s) 525
GluI GCNGC 5 cut(s) 76, 441, 444, 447, 450
HaeIII GGCC 2 cut(s) 68, 421
Hin1II CATG 6 cut(s) 59, 67, 95, 149, 246, 572
HinfI GANTC 4 cut(s) 169, 188, 488, 509
HphI GGTGA 2 cut(s) 327, 508
Hpy188I TCNGA 2 cut(s) 487, 493
Hpy188III TCNNGA 4 cut(s) 100, 163, 557, 569
HpyAV CCTTC 4 cut(s) 18, 141, 183, 451
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 8, 246, 449, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 449
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 6 cut(s) 59, 67, 95, 149, 246, 572
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 4 cut(s) 60, 332, 553, 559
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 9 cut(s) 6, 33, 82, 193, 402, 435, 459, 486, 531
Lsp1109I GCAGC 4 cut(s) 433, 452, 455, 461
LweI GCATC 1 cut(s) 574
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 514
MalI GATC 4 cut(s) 62, 334, 555, 561
MboI GATC 4 cut(s) 60, 332, 553, 559
MboII GAAGA 5 cut(s) 55, 108, 131, 178, 563
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 416
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 3 cut(s) 157, 469, 495
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 415
Mox20I TGGCCA 1 cut(s) 68
MscI TGGCCA 1 cut(s) 68
MseI TTAA 2 cut(s) 372, 622
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 446, 449
NdeII GATC 4 cut(s) 60, 332, 553, 559
NlaIII CATG 6 cut(s) 59, 67, 95, 149, 246, 572
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 2 cut(s) 59, 246
PagI TCATGA 1 cut(s) 568
PfeI GAWTC 3 cut(s) 169, 188, 488
PkrI GCNGC 5 cut(s) 77, 442, 445, 448, 451
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 184, 529
RsaNI GTAC 2 cut(s) 183, 528
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 372, 622
SatI GCNGC 5 cut(s) 76, 441, 444, 447, 450
Sau3AI GATC 4 cut(s) 60, 332, 553, 559
Sau96I GGNCC 1 cut(s) 419
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 416
SetI ASST 6 cut(s) 130, 283, 290, 340, 448, 454
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 2 cut(s) 339, 447
SmiMI CAYNNNNRTG 1 cut(s) 54
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 3 cut(s) 157, 469, 495
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 1 cut(s) 196
TaqII GACCGA 1 cut(s) 525
TasI AATT 3 cut(s) 157, 469, 495
TatI WGTACW 1 cut(s) 182
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 3 cut(s) 169, 188, 488
Tru1I TTAA 2 cut(s) 372, 622
Tru9I TTAA 2 cut(s) 372, 622
TscAI CASTG 3 cut(s) 421, 429, 622
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 4 cut(s) 440, 443, 446, 449
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 4 cut(s) 302, 470, 583, 585
TspRI CASTG 3 cut(s) 421, 429, 622
XapI RAATTY 1 cut(s) 495
XceI RCATGY 2 cut(s) 59, 246
XspI CTAG 1 cut(s) 525
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.