Rh7BG321300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004859
Physical Location & Seq
Reverse (-)
31418308 .. 31420691
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG321300.1

Sequence Viewer

Length: 951 bp
ATGGCTCTTCAACAGCATCACCAGATGAGGAGTGACTCTAGTTATCGTCAAGATTTGAACTTTTTTCCATCTCAACTGTGTCTCTCAAAAACCACCTTTGGAGTCGTGGCTAATTCGGAAATGGGTTATGGTGTTCATGACAGAAAGACCACCATGTATCTGAATCTTGTTGGAGATGAATCTGATCATGATGATGTTATACAGAGCACGGCTGCTGGCAAAACTAAGCTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCAAAACTCAAAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAAAGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCCTCTAGTTCTCAGCCTATTATTATTCCTCATCATGATCATGATGAAGAAGATGGGACTAAGAATAATGCCTCTAGTGATCGTTCAACAATCTCAATCAACACCAGTAGTGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATGTACTAATCTTTCCCTCACTCCCTCACACAGACCACTTGTTCCCAGCTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAATCTTTGGATCACAAATGAGTATGTTTCGTTTTCCACTCCGAGTCATAAAATCAAATGCATACTATTTGTTTGTTTTTTTCTTTCCTAGTTTTCTTTTTTCTTTTTGTTTTAATCAAAATTTTGCGACTTATTGCATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

316

Amino Acids

36.36

Weight (kDa)

9.3

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 80 - 126 4.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 83 - 143 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 132 - 174 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 135 - 176 8.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 558
AclWI GGATC 3 cut(s) 374, 395, 823
AcsI RAATTY 1 cut(s) 925
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 727
AflIII ACRYGT 1 cut(s) 722
AgsI TTSAA 4 cut(s) 11, 58, 666, 778
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 4 cut(s) 229, 257, 376, 771
AluI AGCT 4 cut(s) 229, 257, 376, 771
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 3 cut(s) 374, 395, 823
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 4 cut(s) 241, 251, 285, 462
ApeKI GCWGC 2 cut(s) 212, 707
ApoI RAATTY 1 cut(s) 925
AspS9I GGNCC 3 cut(s) 286, 296, 462
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 199, 719
BccI CCATC 3 cut(s) 76, 326, 626
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 2 cut(s) 184, 616
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 6 cut(s) 39, 377, 534, 585, 654, 894
BisI GCNGC 2 cut(s) 213, 708
BlpI GCTNAGC 2 cut(s) 321, 703
BlsI GCNGC 2 cut(s) 214, 709
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 286, 296, 462
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 25, 334
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 267
Bpu1102I GCTNAGC 2 cut(s) 321, 703
BsaJI CCNNGG 2 cut(s) 383, 484
Bse1I ACTGG 3 cut(s) 289, 311, 684
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 383, 484
BseMII CTCAG 4 cut(s) 312, 350, 605, 717
BseNI ACTGG 3 cut(s) 289, 311, 684
BseRI GAGGAG 2 cut(s) 43, 571
BseXI GCAGC 2 cut(s) 199, 719
BseYI CCCAGC 1 cut(s) 767
BshFI GGCC 4 cut(s) 243, 253, 287, 464
BsiHKAI GWGCWC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 4 cut(s) 243, 253, 287, 464
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
Bsp1720I GCTNAGC 2 cut(s) 321, 703
BspANI GGCC 4 cut(s) 243, 253, 287, 464
BspCNI CTCAG 4 cut(s) 313, 351, 604, 716
BspHI TCATGA 4 cut(s) 136, 187, 613, 619
BspPI GGATC 3 cut(s) 374, 395, 823
BspQI GCTCTTC 2 cut(s) 12, 485
BsrI ACTGG 3 cut(s) 289, 311, 684
BssECI CCNNGG 2 cut(s) 383, 484
BssMI GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 12, 414, 485
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 2 cut(s) 217, 255
BstDEI CTNAG 6 cut(s) 225, 321, 359, 591, 639, 703
BstKTI GATC 7 cut(s) 187, 341, 382, 390, 619, 661, 818
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
BstMWI GCNNNNNNNGC 3 cut(s) 470, 547, 713
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 2 cut(s) 524, 726
BstSCI CCNGG 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 199, 719
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 4 cut(s) 243, 253, 287, 464
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 217, 255
CaiI CAGNNNCTG 1 cut(s) 713
CciI TCATGA 4 cut(s) 136, 187, 613, 619
Cfr13I GGNCC 3 cut(s) 286, 296, 462
Csp6I GTAC 1 cut(s) 726
CviAII CATG 9 cut(s) 137, 154, 188, 466, 521, 529, 614, 620, 723
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 6 cut(s) 225, 321, 359, 591, 639, 703
DpnI GATC 7 cut(s) 186, 340, 381, 389, 618, 660, 817
DpnII GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
Eam1104I CTCTTC 3 cut(s) 12, 414, 485
EarI CTCTTC 3 cut(s) 12, 414, 485
Eco130I CCWWGG 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 383
EcoT22I ATGCAT 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 9 cut(s) 140, 157, 191, 469, 524, 532, 617, 623, 726
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 649
FatI CATG 9 cut(s) 136, 153, 187, 465, 520, 528, 613, 619, 722
FbaI TGATCA 2 cut(s) 184, 616
Fnu4HI GCNGC 2 cut(s) 213, 708
Fsp4HI GCNGC 2 cut(s) 213, 708
FspBI CTAG 6 cut(s) 39, 377, 534, 585, 654, 894
GluI GCNGC 2 cut(s) 213, 708
GsaI CCCAGC 1 cut(s) 771
HaeIII GGCC 4 cut(s) 243, 253, 287, 464
Hin1II CATG 9 cut(s) 140, 157, 191, 469, 524, 532, 617, 623, 726
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 7 cut(s) 35, 102, 163, 179, 263, 695, 849
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 4 cut(s) 118, 162, 184, 848
Hpy188III TCNNGA 8 cut(s) 50, 137, 188, 329, 508, 614, 620, 778
Hpy8I GTNNAC 1 cut(s) 562
HpyAV CCTTC 2 cut(s) 390, 483
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 3 cut(s) 354, 866, 942
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 547, 713
HpyF3I CTNAG 6 cut(s) 225, 321, 359, 591, 639, 703
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 9 cut(s) 140, 157, 191, 469, 524, 532, 617, 623, 726
Ksp22I TGATCA 2 cut(s) 184, 616
Kzo9I GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
LguI GCTCTTC 2 cut(s) 12, 485
Lsp1109I GCAGC 2 cut(s) 199, 719
LweI GCATC 2 cut(s) 25, 334
MaeI CTAG 6 cut(s) 39, 377, 534, 585, 654, 894
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 32
MalI GATC 7 cut(s) 186, 340, 381, 389, 618, 660, 817
MboI GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
MboII GAAGA 8 cut(s) 272, 425, 428, 431, 472, 582, 638, 641
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 112, 925
MlyI GAGTC 4 cut(s) 29, 111, 257, 858
MmeI TCCRAC 2 cut(s) 151, 579
Mph1103I ATGCAT 1 cut(s) 868
MseI TTAA 2 cut(s) 369, 918
MslI CAYNNNNRTG 4 cut(s) 192, 330, 519, 618
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 470, 547, 713
NdeII GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
NlaIII CATG 9 cut(s) 140, 157, 191, 469, 524, 532, 617, 623, 726
NmuCI GTSAC 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 868
NspI RCATGY 2 cut(s) 524, 726
PagI TCATGA 4 cut(s) 136, 187, 613, 619
PciI ACATGT 1 cut(s) 722
PciSI GCTCTTC 2 cut(s) 12, 485
PfeI GAWTC 3 cut(s) 163, 179, 695
PkrI GCNGC 2 cut(s) 214, 709
PleI GAGTC 4 cut(s) 29, 110, 257, 857
PpsI GAGTC 4 cut(s) 29, 110, 257, 857
PscI ACATGT 1 cut(s) 722
Psp1406I AACGTT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 767
PspGI CCWGG 1 cut(s) 484
PspPI GGNCC 3 cut(s) 286, 296, 462
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
RseI CAYNNNNRTG 4 cut(s) 192, 330, 519, 618
SapI GCTCTTC 2 cut(s) 12, 485
SaqAI TTAA 2 cut(s) 369, 918
SatI GCNGC 2 cut(s) 213, 708
Sau3AI GATC 7 cut(s) 184, 338, 379, 387, 616, 658, 815
Sau96I GGNCC 3 cut(s) 286, 296, 462
SchI GAGTC 4 cut(s) 29, 111, 257, 858
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 98, 231, 259, 365, 378, 561, 773
SfaNI GCATC 2 cut(s) 25, 334
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 4 cut(s) 192, 330, 519, 618
Sse9I AATT 2 cut(s) 112, 925
SspMI CTAG 6 cut(s) 39, 377, 534, 585, 654, 894
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 561
TasI AATT 2 cut(s) 112, 925
TatI WGTACW 1 cut(s) 725
TfiI GAWTC 3 cut(s) 163, 179, 695
Tru1I TTAA 2 cut(s) 369, 918
Tru9I TTAA 2 cut(s) 369, 918
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 2 cut(s) 212, 707
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 4 cut(s) 125, 192, 639, 708
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 925
XceI RCATGY 2 cut(s) 524, 726
XspI CTAG 6 cut(s) 39, 377, 534, 585, 654, 894
Zsp2I ATGCAT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.