Rorug07G0188000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004859
Physical Location & Seq
Reverse (-)
15907563 .. 15912918
5356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0188000.1

Sequence Viewer

Length: 1032 bp
ATGGCCATAGGACGGGAAATTAGCCAACGCGCCATCACCAATGGTTTGCTGACTTCAACAGCTGCCGATCGTGTTCTGCAAACGGGGTTGTTTCTTTCTGGCTGGTGGAAACTTGGATTTCAGTACGGGATCATGGCTATTGGGTTTTATGGGTGTTTTAGGTGTTTAGTTGTTGAGCTATTTCAAATGCTAGTCGAACTTGAGCTATTTCAAATGCTCAAGTGTTCAGTCATTGTTGAGAAGGTGGAGTCTAGGTCATGCTCCCAGTGGAGGCTGTACATCTTTGAAGCTGCAGAATCAAGCAAGAGGTCTTGTGCGATAAAAAGAGCGTTTGGCTGTTATGAAGACAAGTTCATTCCAATTCCTATTCCTCTCATTGATCTCCATCATCAGGCATTCCTACAAGTTTTTCTCAGATGCAGCAAGAGTAGGAGGCTTAGATGGAGTATTGATACCTTCGGCCTGGGATCAAAAATGGTACTGGAAATCATAACGGCAAACACTGATACTGATCAAACCTTGGTGGGAGGGGCCGATGTTCGTTCTGATAATAATCTGCAGCTGCCACCAATTACATTTCATCTTTTACTATGCGCACTACACAGCTCCTCAAGGCCCCGCACTCCCGCAGGCTACTCTTGCAAAAATCCTGCAAATGTTACGGTGGATGATTTCGTCTACTCTGCCTTAGGAGTTCCTTGTAACACCTCAAATATGATCAAAGCGGGAGTCACCACCGCATTTTCTTCTCAATTCCCTGGTTTGAACGGCCTGGGCGTTGCACTAGCTCGCGCAGACTTGGCTGTTGGTGGAGTTGTCCCAATGCACACACACCATGGAGCTTCAGAAATTGGTGACATCATGGTTATCCCTCAAGGGCTGTTGCACTTCCAAGCGAATGTTGGTGATACTCCAGCTCTTGAGTTTGTTAGCTTCAGCAGTGATAGCCCCGGTTTGCAGATGCTCCATACCGCACTATTTCAAAACAATATACCTACTGATCGCGCGATCCACTTTCCTCAACACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

343

Amino Acids

37.67

Weight (kDa)

7.14

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 231 - 284 2.9e-08 Cupin
Cupin_1 PF00190 285 - 326 1.2e-09 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 595
AccI GTMKAC 1 cut(s) 678
AccII CGCG 4 cut(s) 30, 792, 1005, 1007
AciI CCGC 5 cut(s) 619, 627, 725, 738, 972
AclWI GGATC 3 cut(s) 137, 475, 1003
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 828, 919
AfaI GTAC 3 cut(s) 125, 278, 480
AfiI CCNNNNNNNGG 3 cut(s) 12, 270, 391
AgsI TTSAA 6 cut(s) 57, 185, 212, 287, 766, 983
AjnI CCWGG 3 cut(s) 462, 757, 771
AlwI GGATC 3 cut(s) 137, 475, 1003
AoxI GGCC 5 cut(s) 3, 460, 531, 614, 769
ApeKI GCWGC 5 cut(s) 62, 290, 420, 559, 562
ArsI GACNNNNNNTTYG 2 cut(s) 714, 746
AspLEI GCGC 4 cut(s) 32, 596, 794, 1007
AspS9I GGNCC 2 cut(s) 531, 615
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 4 cut(s) 28, 724, 866, 917
AxyI CCTNAGG 1 cut(s) 688
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 49, 277, 432, 549, 571
BccI CCATC 3 cut(s) 41, 393, 435
BceAI ACGGC 2 cut(s) 510, 784
BciT130I CCWGG 3 cut(s) 464, 759, 773
BclI TGATCA 2 cut(s) 511, 717
BcnI CCSGG 1 cut(s) 951
BfaI CTAG 3 cut(s) 191, 252, 785
BfmI CTRYAG 2 cut(s) 291, 557
BisI GCNGC 5 cut(s) 63, 291, 421, 560, 563
BlsI GCNGC 5 cut(s) 64, 292, 422, 561, 564
Bme1390I CCNGG 4 cut(s) 464, 759, 773, 951
BmgT120I GGNCC 2 cut(s) 531, 615
BmiI GGNNCC 2 cut(s) 532, 617
BmrFI CCNGG 4 cut(s) 464, 759, 773, 951
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 407, 951
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 897
BpuEI CTTGAG 5 cut(s) 203, 221, 595, 858, 941
BpuMI CCSGG 1 cut(s) 951
BsaBI GATNNNNATC 3 cut(s) 384, 510, 552
BsaJI CCNNGG 6 cut(s) 463, 519, 757, 772, 835, 949
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 270, 391
Bse1I ACTGG 2 cut(s) 265, 486
Bse21I CCTNAGG 1 cut(s) 688
Bse8I GATNNNNATC 3 cut(s) 384, 510, 552
BseBI CCWGG 3 cut(s) 464, 759, 773
BseDI CCNNGG 6 cut(s) 463, 519, 757, 772, 835, 949
BseGI GGATG 1 cut(s) 673
BseJI GATNNNNATC 3 cut(s) 384, 510, 552
BseLI CCNNNNNNNGG 3 cut(s) 12, 270, 391
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 2 cut(s) 265, 486
BseRI GAGGAG 1 cut(s) 598
BseXI GCAGC 5 cut(s) 49, 277, 432, 549, 571
Bsh1236I CGCG 4 cut(s) 30, 792, 1005, 1007
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 5 cut(s) 5, 462, 533, 616, 771
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 951
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 3 cut(s) 12, 270, 391
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 5 cut(s) 5, 462, 533, 616, 771
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 5 cut(s) 619, 627, 725, 738, 972
BspANI GGCC 5 cut(s) 5, 462, 533, 616, 771
BspCNI CTCAG 1 cut(s) 426
BspFNI CGCG 4 cut(s) 30, 792, 1005, 1007
BspLI GGNNCC 2 cut(s) 532, 617
BspMAI CTGCAG 2 cut(s) 295, 561
BspPI GGATC 3 cut(s) 137, 475, 1003
BsrGI TGTACA 1 cut(s) 276
BsrI ACTGG 2 cut(s) 265, 486
BssECI CCNNGG 6 cut(s) 463, 519, 757, 772, 835, 949
BssMI GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
BssT1I CCWWGG 2 cut(s) 519, 835
Bst2UI CCWGG 3 cut(s) 464, 759, 773
Bst4CI ACNGT 1 cut(s) 664
BstAUI TGTACA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 631, 790
BstDEI CTNAG 3 cut(s) 413, 437, 688
BstDSI CCRYGG 1 cut(s) 835
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 4 cut(s) 30, 792, 1005, 1007
BstHHI GCGC 4 cut(s) 32, 596, 794, 1007
BstKTI GATC 8 cut(s) 70, 132, 382, 470, 514, 720, 1003, 1011
BstMBI GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 639, 800, 945
BstNI CCWGG 3 cut(s) 464, 759, 773
BstSCI CCNGG 4 cut(s) 462, 757, 771, 949
BstSFI CTRYAG 2 cut(s) 291, 557
BstUI CGCG 4 cut(s) 30, 792, 1005, 1007
BstV1I GCAGC 5 cut(s) 49, 277, 432, 549, 571
BstV2I GAAGAC 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 688
BsuRI GGCC 5 cut(s) 5, 462, 533, 616, 771
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 2 cut(s) 946, 1024
BtsIMutI CAGTG 4 cut(s) 272, 501, 946, 1024
Cac8I GCNNGC 2 cut(s) 631, 790
CfoI GCGC 4 cut(s) 32, 596, 794, 1007
Cfr13I GGNCC 2 cut(s) 531, 615
Csp6I GTAC 3 cut(s) 124, 277, 479
CviAII CATG 4 cut(s) 133, 258, 836, 862
CviQI GTAC 3 cut(s) 124, 277, 479
DdeI CTNAG 3 cut(s) 413, 437, 688
DpnI GATC 8 cut(s) 69, 131, 381, 469, 513, 719, 1002, 1010
DpnII GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 519, 835
Eco57I CTGAAG 2 cut(s) 828, 919
Eco81I CCTNAGG 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 615
EcoRII CCWGG 3 cut(s) 462, 757, 771
EcoT14I CCWWGG 2 cut(s) 519, 835
ErhI CCWWGG 2 cut(s) 519, 835
FaeI CATG 4 cut(s) 136, 261, 839, 865
FaqI GGGAC 1 cut(s) 803
FatI CATG 4 cut(s) 132, 257, 835, 861
FauI CCCGC 3 cut(s) 626, 634, 718
FbaI TGATCA 2 cut(s) 511, 717
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 63, 291, 421, 560, 563
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 5 cut(s) 63, 291, 421, 560, 563
FspAI RTGCGCAY 1 cut(s) 595
FspBI CTAG 3 cut(s) 191, 252, 785
FspI TGCGCA 1 cut(s) 595
GlaI GCGC 4 cut(s) 31, 595, 793, 1006
GluI GCNGC 5 cut(s) 63, 291, 421, 560, 563
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 5 cut(s) 5, 462, 533, 616, 771
HapII CCGG 1 cut(s) 951
HhaI GCGC 4 cut(s) 32, 596, 794, 1007
Hin1II CATG 4 cut(s) 136, 261, 839, 865
Hin6I GCGC 4 cut(s) 30, 594, 792, 1005
HinP1I GCGC 4 cut(s) 30, 594, 792, 1005
HinfI GANTC 3 cut(s) 248, 296, 729
HpaII CCGG 1 cut(s) 951
HphI GGTGA 4 cut(s) 28, 724, 866, 917
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 3 cut(s) 416, 547, 847
Hpy188III TCNNGA 1 cut(s) 920
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 2 cut(s) 235, 466
HpyCH4III ACNGT 1 cut(s) 664
HpyF10VI GCNNNNNNNGC 3 cut(s) 639, 800, 945
HpyF3I CTNAG 3 cut(s) 413, 437, 688
Hsp92II CATG 4 cut(s) 136, 261, 839, 865
HspAI GCGC 4 cut(s) 30, 594, 792, 1005
Ksp22I TGATCA 2 cut(s) 511, 717
Kzo9I GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
LmnI GCTCC 4 cut(s) 266, 611, 839, 969
Lsp1109I GCAGC 5 cut(s) 49, 277, 432, 549, 571
LweI GCATC 2 cut(s) 407, 951
MaeI CTAG 3 cut(s) 191, 252, 785
MaeIII GTNAC 4 cut(s) 658, 701, 730, 854
MalI GATC 8 cut(s) 69, 131, 381, 469, 513, 719, 1002, 1010
MboI GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
MboII GAAGA 2 cut(s) 356, 738
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 18, 360, 570, 752, 849
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 257, 738
MnlI CCTC 9 cut(s) 264, 300, 381, 426, 521, 619, 718, 882, 1029
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 62, 562
MspI CCGG 1 cut(s) 951
MspR9I CCNGG 4 cut(s) 464, 759, 773, 951
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 3 cut(s) 464, 759, 773
MvnI CGCG 4 cut(s) 30, 792, 1005, 1007
MwoI GCNNNNNNNGC 3 cut(s) 639, 800, 945
NciI CCSGG 1 cut(s) 951
NcoI CCATGG 1 cut(s) 835
NdeII GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
NlaIII CATG 4 cut(s) 136, 261, 839, 865
NlaIV GGNNCC 2 cut(s) 532, 617
NmuCI GTSAC 2 cut(s) 730, 854
NsbI TGCGCA 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 5 cut(s) 64, 292, 422, 561, 564
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 2 cut(s) 256, 737
PpsI GAGTC 2 cut(s) 256, 737
Psp6I CCWGG 3 cut(s) 462, 757, 771
PspGI CCWGG 3 cut(s) 462, 757, 771
PspN4I GGNNCC 2 cut(s) 532, 617
PspPI GGNCC 2 cut(s) 531, 615
PstI CTGCAG 2 cut(s) 295, 561
PvuI CGATCG 1 cut(s) 70
PvuII CAGCTG 2 cut(s) 62, 562
RsaI GTAC 3 cut(s) 125, 278, 480
RsaNI GTAC 3 cut(s) 124, 277, 479
SatI GCNGC 5 cut(s) 63, 291, 421, 560, 563
Sau3AI GATC 8 cut(s) 67, 129, 379, 467, 511, 717, 1000, 1008
Sau96I GGNCC 2 cut(s) 531, 615
SchI GAGTC 2 cut(s) 257, 738
ScrFI CCNGG 4 cut(s) 464, 759, 773, 951
SfaNI GCATC 2 cut(s) 407, 951
SfcI CTRYAG 2 cut(s) 291, 557
SmlI CTYRAG 5 cut(s) 200, 218, 610, 873, 920
SmoI CTYRAG 5 cut(s) 200, 218, 610, 873, 920
Sse9I AATT 5 cut(s) 18, 360, 570, 752, 849
SsiI CCGC 5 cut(s) 619, 627, 725, 738, 972
SspMI CTAG 3 cut(s) 191, 252, 785
StyD4I CCNGG 4 cut(s) 462, 757, 771, 949
StyI CCWWGG 2 cut(s) 519, 835
TaaI ACNGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 195
TasI AATT 5 cut(s) 18, 360, 570, 752, 849
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 296
TscAI CASTG 4 cut(s) 272, 508, 946, 1031
TseFI GTSAC 2 cut(s) 730, 854
TseI GCWGC 5 cut(s) 62, 290, 420, 559, 562
Tsp45I GTSAC 2 cut(s) 730, 854
TspDTI ATGAA 3 cut(s) 343, 357, 569
TspRI CASTG 4 cut(s) 272, 508, 946, 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 3 cut(s) 191, 252, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.