Rh7DG327300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004859
Physical Location & Seq
Reverse (-)
39626023 .. 39628625
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG327300.1

Sequence Viewer

Length: 1098 bp
ATGGGTCCTCAACAGCATCACCAGATGAGGAGTGACTCTAGTTATCGTCAAGATTTGAACTTTTTCCCATCACAACTGTGTCTCTCAAAAACCACCTTTGGAGTCGTGGCTAATTCGGAAATGGGTTATGGTGTTCATGACAGAAAGAGCACCATGTATCTGAATCTTGTTGGAGATGAATCTGATCATGATGACGTTATACAGACCACCGCTGCTGGCAAAACTAAGCTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCCAAACTCATAGAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGTAATAGCAATAATCAAACTAGTTTCATGTTTTTAATTTTGGAAATGTATATATGCCGGCTGTTTTCTTGTGTAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGCTTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAAAGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCCTCTAGTTCTCAGCCTATTATTATTCCTCCTCATGATCATGATGAAGAAGATGGGACTAAGAATAATGCCTTTAGTGATCGTTCAACGATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATGTACTAATCTTTCCCTCACTCCCTCAAACAGACCACTTGTTCCCAGCTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAATCTTTGGATCACAAATGATTGCAGAGTCTTGCAGGATCAAGGGCAATGAGAACGGTCAGTCAACAGATTCAAACTCAGAAACTTCTGGAGATGAATCAGTACTTACCACCTACAGGACCAACAATAATAATGTTTCTTCCATGTCTGGAGAAGATCAAAATGAGAAGACGAGCGTGATGCCATTCATTGATTTCCTTGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000987 GO:0000988 GO:0000989 GO:0001012 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001935 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009741 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0040008 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048532 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050673 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0051782 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0080050 GO:0080060 GO:0080090 GO:0080113 GO:0090567 GO:0097159 GO:0097305 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1904961 GO:1990837 GO:2000022 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000241 GO:2000242 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

365

Amino Acids

41.17

Weight (kDa)

6.9

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 80 - 117 1.9e-10 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 83 - 168 5.4e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 157 - 199 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 160 - 201 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AclI AACGTT 1 cut(s) 633
AclWI GGATC 4 cut(s) 449, 470, 898, 926
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 2 cut(s) 802, 984
AfiI CCNNNNNNNGG 1 cut(s) 996
AflIII ACRYGT 1 cut(s) 797
AgsI TTSAA 4 cut(s) 58, 741, 853, 954
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 559
AleI CACNNNNGTG 1 cut(s) 76
AluBI AGCT 4 cut(s) 229, 257, 451, 846
AluI AGCT 4 cut(s) 229, 257, 451, 846
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 4 cut(s) 449, 470, 898, 926
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 4 cut(s) 241, 251, 285, 537
ApeKI GCWGC 2 cut(s) 212, 782
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 5 cut(s) 5, 286, 296, 537, 999
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 3 cut(s) 5, 296, 999
BbsI GAAGAC 2 cut(s) 267, 1055
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 199, 794
BccI CCATC 3 cut(s) 76, 326, 701
BcgI CGANNNNNNTGC 2 cut(s) 1042, 1076
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 2 cut(s) 184, 691
BcoDI GTCTC 1 cut(s) 86
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 5 cut(s) 39, 363, 452, 609, 660
BfmI CTRYAG 1 cut(s) 994
BisI GCNGC 2 cut(s) 213, 783
BlpI GCTNAGC 2 cut(s) 321, 778
BlsI GCNGC 2 cut(s) 214, 784
BmcAI AGTACT 1 cut(s) 984
Bme1390I CCNGG 1 cut(s) 561
Bme18I GGWCC 3 cut(s) 5, 296, 999
BmgT120I GGNCC 5 cut(s) 5, 286, 296, 537, 999
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 561
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 3 cut(s) 25, 334, 1050
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 267, 1055
BpmI CTGGAG 2 cut(s) 990, 1050
Bpu1102I GCTNAGC 2 cut(s) 321, 778
BsaBI GATNNNNATC 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 458, 559, 1078
Bsc4I CCNNNNNNNGG 1 cut(s) 996
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 3 cut(s) 289, 311, 759
Bse3DI GCAATG 1 cut(s) 934
Bse8I GATNNNNATC 1 cut(s) 749
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 458, 559, 1078
BseJI GATNNNNATC 1 cut(s) 749
BseLI CCNNNNNNNGG 1 cut(s) 996
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 5 cut(s) 312, 425, 680, 792, 972
BseNI ACTGG 3 cut(s) 289, 311, 759
BseRI GAGGAG 3 cut(s) 43, 646, 675
BseXI GCAGC 2 cut(s) 199, 794
BseYI CCCAGC 1 cut(s) 842
BshFI GGCC 4 cut(s) 243, 253, 287, 539
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 400
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 996
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 4 cut(s) 243, 253, 287, 539
Bsp1286I GDGCHC 1 cut(s) 152
Bsp1720I GCTNAGC 2 cut(s) 321, 778
BspACI CCGC 1 cut(s) 210
BspANI GGCC 4 cut(s) 243, 253, 287, 539
BspCNI CTCAG 5 cut(s) 313, 426, 679, 791, 971
BspHI TCATGA 4 cut(s) 136, 187, 688, 694
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 449, 470, 898, 926
BspQI GCTCTTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 934
BsrFI RCCGGY 1 cut(s) 399
BsrI ACTGG 3 cut(s) 289, 311, 759
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 458, 559, 1078
BssT1I CCWWGG 2 cut(s) 458, 1078
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 2 cut(s) 78, 938
Bst6I CTCTTC 2 cut(s) 489, 560
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 217, 255, 401
BstDEI CTNAG 7 cut(s) 225, 321, 434, 666, 714, 778, 958
BstMAI GTCTC 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 545, 622, 788
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 2 cut(s) 599, 801
BstSCI CCNGG 1 cut(s) 559
BstSFI CTRYAG 1 cut(s) 994
BstV1I GCAGC 2 cut(s) 199, 794
BstV2I GAAGAC 2 cut(s) 267, 1055
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 4 cut(s) 243, 253, 287, 539
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 217, 255, 401
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 4 cut(s) 136, 187, 688, 694
Cfr10I RCCGGY 1 cut(s) 399
Cfr13I GGNCC 5 cut(s) 5, 286, 296, 537, 999
Csp6I GTAC 2 cut(s) 801, 983
CviQI GTAC 2 cut(s) 801, 983
DdeI CTNAG 7 cut(s) 225, 321, 434, 666, 714, 778, 958
Eam1104I CTCTTC 2 cut(s) 489, 560
EarI CTCTTC 2 cut(s) 489, 560
Eco130I CCWWGG 2 cut(s) 458, 1078
Eco47I GGWCC 3 cut(s) 5, 296, 999
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 458, 1078
ErhI CCWWGG 2 cut(s) 458, 1078
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 724
FbaI TGATCA 2 cut(s) 184, 691
Fnu4HI GCNGC 2 cut(s) 213, 783
Fsp4HI GCNGC 2 cut(s) 213, 783
FspBI CTAG 5 cut(s) 39, 363, 452, 609, 660
GluI GCNGC 2 cut(s) 213, 783
GsaI CCCAGC 1 cut(s) 846
GsuI CTGGAG 2 cut(s) 990, 1050
HaeIII GGCC 4 cut(s) 243, 253, 287, 539
HapII CCGG 1 cut(s) 400
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 9 cut(s) 35, 102, 163, 179, 263, 770, 908, 950, 977
HpaII CCGG 1 cut(s) 400
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 2 cut(s) 637, 945
Hpy188I TCNGA 4 cut(s) 118, 162, 184, 961
Hpy8I GTNNAC 2 cut(s) 637, 945
HpyAV CCTTC 2 cut(s) 465, 558
HpyCH4III ACNGT 2 cut(s) 78, 938
HpyCH4IV ACGT 2 cut(s) 195, 633
HpyCH4V TGCA 3 cut(s) 429, 905, 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 622, 788
HpyF3I CTNAG 7 cut(s) 225, 321, 434, 666, 714, 778, 958
HpySE526I ACGT 2 cut(s) 195, 633
KroI GCCGGC 1 cut(s) 399
KroNI GCCGGC 1 cut(s) 401
Ksp22I TGATCA 2 cut(s) 184, 691
LguI GCTCTTC 1 cut(s) 560
Lsp1109I GCAGC 2 cut(s) 199, 794
LweI GCATC 3 cut(s) 25, 334, 1050
MaeI CTAG 5 cut(s) 39, 363, 452, 609, 660
MaeII ACGT 2 cut(s) 195, 633
MaeIII GTNAC 1 cut(s) 32
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 112, 378
MlyI GAGTC 4 cut(s) 29, 111, 257, 917
MmeI TCCRAC 2 cut(s) 151, 654
MroNI GCCGGC 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 3 cut(s) 377, 444, 1096
MslI CAYNNNNRTG 4 cut(s) 76, 330, 594, 693
MspA1I CMGCKG 2 cut(s) 212, 257
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 561
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 545, 622, 788
NaeI GCCGGC 1 cut(s) 401
NgoMIV GCCGGC 1 cut(s) 399
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 2 cut(s) 599, 801
OliI CACNNNNGTG 1 cut(s) 76
PagI TCATGA 4 cut(s) 136, 187, 688, 694
PciI ACATGT 1 cut(s) 797
PciSI GCTCTTC 1 cut(s) 560
PdiI GCCGGC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 5 cut(s) 163, 179, 770, 950, 977
PkrI GCNGC 2 cut(s) 214, 784
PleI GAGTC 4 cut(s) 29, 110, 257, 916
PpsI GAGTC 4 cut(s) 29, 110, 257, 916
PpuMI RGGWCCY 1 cut(s) 5
PscI ACATGT 1 cut(s) 797
Psp1406I AACGTT 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 5 cut(s) 5, 286, 296, 537, 999
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 2 cut(s) 802, 984
RsaNI GTAC 2 cut(s) 801, 983
RseI CAYNNNNRTG 4 cut(s) 76, 330, 594, 693
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 3 cut(s) 377, 444, 1096
SatI GCNGC 2 cut(s) 213, 783
Sau96I GGNCC 5 cut(s) 5, 286, 296, 537, 999
ScaI AGTACT 1 cut(s) 984
SchI GAGTC 4 cut(s) 29, 111, 257, 917
ScrFI CCNGG 1 cut(s) 561
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 3 cut(s) 25, 334, 1050
SfcI CTRYAG 1 cut(s) 994
SinI GGWCC 3 cut(s) 5, 296, 999
SmiMI CAYNNNNRTG 4 cut(s) 76, 330, 594, 693
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 2 cut(s) 112, 378
SsiI CCGC 1 cut(s) 210
SspMI CTAG 5 cut(s) 39, 363, 452, 609, 660
StyD4I CCNGG 1 cut(s) 559
StyI CCWWGG 2 cut(s) 458, 1078
TaaI ACNGT 2 cut(s) 78, 938
TaiI ACGT 2 cut(s) 198, 636
TasI AATT 2 cut(s) 112, 378
TatI WGTACW 2 cut(s) 800, 982
TfiI GAWTC 5 cut(s) 163, 179, 770, 950, 977
Tru1I TTAA 3 cut(s) 377, 444, 1096
Tru9I TTAA 3 cut(s) 377, 444, 1096
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 2 cut(s) 212, 782
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 7 cut(s) 125, 192, 358, 714, 783, 990, 1057
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 3 cut(s) 5, 296, 999
XceI RCATGY 2 cut(s) 599, 801
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 5 cut(s) 39, 363, 452, 609, 660
ZrmI AGTACT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.